Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00412 ATGGGTACGCTTCTCTTCTCCCCTTCTTCTTCTTCTTCTTCTTCAGCTTATCATTCTCTGAAGGCTCACACTCTGTTTCTTCGTCGAAATGGCTCACGCTCTTTCTCTGATTTTCCGAATCTTTGCTCTTCGTTTTGCACTCTCAATCCACCAACTGGATTCCCAAGAAAATCCGCCATTCTCGCAGCAAAGAAGACCAACAAGGAGGACGGTCACCGCTCCGTACCCAAGCCTGACGAGTCCACCGGCTTCTTCCCTGAAGCTGTTCTGCTAAAGGAGTCTGAGAAATTTCTTGAGTGGACTTTTGGTTCTAATTGGCAGAAAAAGGTTGCAGAAGATGGTCAATTTCTTCCCGAATTTGCTGATGCGGAAGAAGAAAAGCTTTATGAATATTTGAACCTTCAGTTGGAAAGTGAAACGAAAGTTGATCAAATGCGTCACTACGAGGTAGTCTTCCTAATTCACGAGAAGAATGCAGAAGAGGTTGAGAGTGTAAATGAGAAAGTTCAAGGTTTTCTAAGGGAGAAGAAAGGGAGGATATGGAGACTGAGTGACTGGGGAATGCGAAGATTGGCATACAAGATAAAGAAAGCCAAGTATGCACATTACATATTGATGAATTTTGAACTGGAGGCCAAATGGATCAATGAATTTAAGAGCATGTTAGATATGGATGAAAGAGTAATTCGACATCTCGTGATTAAGAGGGATGCTGCTATCACCGAAGATTGCCCTCCCCCTCCTGAGTTTCACACGCTTCGTGCAGGCGTAGATGATGATGACAGTGAAGAAGATGACATGGATGATTATGATAGTGAGGATGAAATGGATTGGGATGGTGAGGATGAGTTGGATGATTATGGTGATGAGTTTGAAGATGGTATCATCATTGTTGACAGTGACAACGATGATGATGACAACAAAAGTAAGGCCACCAAATCAGCTGCCAGCAACAAAGGCTTGAGAAATAGAACTCAAAAATAA 984 42.78 MGTLLFSPSSSSSSSAYHSLKAHTLFLRRNGSRSFSDFPNLCSSFCTLNPPTGFPRKSAILAAKKTNKEDGHRSVPKPDESTGFFPEAVLLKESEKFLEWTFGSNWQKKVAEDGQFLPEFADAEEEKLYEYLNLQLESETKVDQMRHYEVVFLIHEKNAEEVESVNEKVQGFLREKKGRIWRLSDWGMRRLAYKIKKAKYAHYILMNFELEAKWINEFKSMLDMDERVIRHLVIKRDAAITEDCPPPPEFHTLRAGVDDDDSEEDDMDDYDSEDEMDWDGEDELDDYGDEFEDGIIIVDSDNDDDDNKSKATKSAASNKGLRNRTQK 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5043544 5046748 + ClCG06G004410.2 Cla06g00412 274604

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00412 327 TIGRFAM S6: ribosomal protein bS6 145 237 IPR000529 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Cla06g00412 327 Pfam Ribosomal protein S6 147 235 IPR000529 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Cla06g00412 327 ProSitePatterns Ribosomal protein S6 signature. 187 196 IPR020815 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Cla06g00412 327 PANTHER 28S RIBOSOMAL PROTEIN S6, MITOCHONDRIAL 108 256 - -
Cla06g00412 327 CDD bS6 147 236 IPR020814 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Cla06g00412 327 SUPERFAMILY Ribosomal protein S6 145 245 IPR035980 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Cla06g00412 327 PANTHER MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S6 108 256 IPR000529 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Cla06g00412 327 MobiDBLite consensus disorder prediction 241 327 - -
Cla06g00412 327 MobiDBLite consensus disorder prediction 313 327 - -
Cla06g00412 327 Gene3D - 140 242 IPR014717 -
Cla06g00412 327 Hamap 30S ribosomal protein S6 [rpsF]. 145 238 IPR020814 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Cla06g00412 327 MobiDBLite consensus disorder prediction 259 300 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00412 - - - csv:101219911 392.504
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g00412 Cla-Chr6:5043544 Cla06g00413 Cla-Chr6:5054416 1.63E-27 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g35 . . Bda03g01193 . . . Bma04g01115 . . Cmo17g00373 . . . . . . . . . . . . . . Cla06g00412 . Cec06g0441 Cco06g0440 Clacu06g0422 Cmu06g0421 . . Cone15ag0715 . . . Csa06g01854 Chy11g01587 . . . . . . . . . Sed05g1232 . . . Cma17g00384 . . Cpe12g00335 . Bhi12g01952 Tan06g2784 Cmetu11g0368 . . . Lcy12g0869 . . . . . . . Lsi09g01509 . . Cme11g02096
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011574 3 1 1 1 0 1 0 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 1 0 1 1 1 0 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g00412 Cla_Chr06 FPKM 11.466466 12.117678 16.777916 16.789604 17.046062 15.667571 18.623505 20.239277 18.54003 19.920336