Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00417 ATGCTACCATCCTTTATTACTTTGGCGATTTGGTTCCAATTTTGCATTAAAATCGACCCAATTCGACCTGCATACATCGCTAGTGACAATATAGGTGCTGGAGCCTTAGTTACAAATCTAATCTTCTATGCTTGCACAAAAACACGAATCACGTCTTCAATGCTCGCACAAAACATATTGAGATTGACATGCACTTTGTACGTGACAAGGAGCAAGACTCACTGTCCTCAAGAGGACTGCACAAATTTGGGTATTCGATTTCTCACTTCCGCAAAGCTGGAGAGGCACAGAGGAGACCGCTATGGCCCCGACCAAGATTCCCACCCTTATCGTCACTCTGCAGCTCCTTCTCGCTTCTCGGACTCCCCCGTGAACCATCACGACACTCGTCGGAGCCCCAGTAACTTCCGCGGCGGCGTTGCTGGAGCTAACCGTCGCCCTTTCGACAGCCCGCCTCGTTACTCTACTCCCGCTGCTGCTGGTTTTCGCCCCATGGGAACTGGTGGGGGGTTCCGTCCAATTCCTGGTCCTGGGGGTGGTGGTTTTGGGTCCAGTTTCCAGCCGCCACCTGTTGCAGGACAGAAACGAGGTTACCCTTTTGCCGGCCGTGGAAGTTCTCCAGATCACTCCGATGGAAGCAATTTTGCCAAGCTATTTGTTGGATCCGTTCCAAGGACAGCCACAGAAGAAATTATTCGCCCGTTGTTTGAAGAACATGGAAATGTGATTGAAGTAGCTTTGATAAAGGATAAGAGAACAGGCCAGCAACAAGGTTTTGATAAGGTAGAAAAATGCAGTTGTGGAGGTCTCATGGCTGGATGTAGCCGTCCAATCAGAATAGCCTTTACTCATGCAGGATGTTGTTTTGTAAAATATACTACCTCAGAAGAAGCTGATAGAGCAATTAGGAACTTGCACAATCAACATACCCTTCCTGGGGGAGCGGGCCCAATTCAAGTTAGATATGCTGATGGAGAGCGAGAGCGCCTTGGTGCAGTTGAGTACAAATTGTTTGTTGGTTCACTAAATAAACAAGCTTCAGAAAAAGAAGTCAAGGAAATTTTTTCTCCCTATGGAGTAGTTGAAGATGTTTACCTTATGCGGGATGAAATGAAACAGAGTCGTGGGTGTGGATTTGTGAAGTATTCACATAGGGATATGGCACTGGCGGCTATAAATGCTCTCAATGGAATCTTTACAATGAGAGGCTGTGATCAACCGTTAAGTGTCCGCTTTGCTGACCCAAAGAAGCCTAGATCTGGAGATTCAAGGGGCCCTCCTGCATTTGGAGGTCCAGGTTTTGGTTCTCGCTTTCAAGCACCTGGGCCAAGACCAATGCCTAATTTTGGTGAATTTATGGGTGATCAAATTCCAATTGATGTACGAGGTTTCAGGCCACCTGTAGATGCTGGTATTCATCCCTTCGGGGGTCAGTTACCTCCTAGGTCGAGTGAAATGGGACCACCTTTGAATTTGGGTGGTCCTGCTAGTGGGTTTAGAGGTCCCAATCAAGGGTTAGTCAATCCAGCATCCTCAGCTTCTCAACAGTCTGCAAGCCAACATCCACAGCATGGCTTGCAAGCGTCGCCAGTGTTAAAGGCAGTTCAGTCACCGAAACAATTGCCACCTTCCAGTCAATTGCACCCTCATGCTCCTTCCTATTCTCAGACACATACATCTGCAGTACTAGCACAGCAGCATAATCAACCACAAAACTTCAATTCTTCTGGTCAATTGCCCTTTAGTCAACCTGCACCTTCCCATGAGTCTTCTGGCTTGGGTGCACAGTTGCCGCTATCTCAGGCTATGGTCCAGCAGGGTGCCTCATCTGCTGCAGTGACACATACTCCTTTGAGCATGAACTTACAATCCCATGGTGCTGCTCCTAATCAACAGCAGCTTCCTACTCCAATTCAGCCACGTCAGAATTCACCTTCCCAGTTAGCACACATGCTGTCACAACAAAAACAAACTCTACAGGCTACTTTTCAGACATCCCAGCAGGCATTCTCTCAGCTACAGCAGCTGATGCAACCATCAAATCAAAGTTCAACATTGCAGCCGAGTTCCCAGACTATTAAGCAGCAGTCTCACTGGGCAGGGGCTGTGCCACATACAACTGCCAATGCCGCTTCTGCACCTTCAGATGAACATACATCTACAGTTCCTCCTGTAGCTATAAATACCCAAGCTGTAGCTCCTGTAAAATGCAATTGGACAGAGCACACTTCTCCTGATGGTTATAAATACTATTATAACAGTGTTACTGGTGAGAGCAAGTGGGAGAGACCTGAAGAGCTTTCAGTGATCGAGCAACAACAAAAGCCACGGGTACTCCAGCCTCATAACCAGCCACATCCTCAACTGCTATCTACTCCGCAACTCTCTCAAACTCCCCAGCCCCAGCTTCAATCTCAGTTCCAGACACAGATGCCCCACCCTCAGCCGCTACAGCAACCTTCATTCCATTCACAGGAAGGTGTTTATACACAATTGCAGCCAGCCAATAGCTCGGTAAATGATCCTACTCGCTTCCACCAGGGATTTCAGGCGACTCAAGAGTGGGCATGGAAGAATAAATAA 2583 47.81 MLPSFITLAIWFQFCIKIDPIRPAYIASDNIGAGALVTNLIFYACTKTRITSSMLAQNILRLTCTLYVTRSKTHCPQEDCTNLGIRFLTSAKLERHRGDRYGPDQDSHPYRHSAAPSRFSDSPVNHHDTRRSPSNFRGGVAGANRRPFDSPPRYSTPAAAGFRPMGTGGGFRPIPGPGGGGFGSSFQPPPVAGQKRGYPFAGRGSSPDHSDGSNFAKLFVGSVPRTATEEIIRPLFEEHGNVIEVALIKDKRTGQQQGFDKVEKCSCGGLMAGCSRPIRIAFTHAGCCFVKYTTSEEADRAIRNLHNQHTLPGGAGPIQVRYADGERERLGAVEYKLFVGSLNKQASEKEVKEIFSPYGVVEDVYLMRDEMKQSRGCGFVKYSHRDMALAAINALNGIFTMRGCDQPLSVRFADPKKPRSGDSRGPPAFGGPGFGSRFQAPGPRPMPNFGEFMGDQIPIDVRGFRPPVDAGIHPFGGQLPPRSSEMGPPLNLGGPASGFRGPNQGLVNPASSASQQSASQHPQHGLQASPVLKAVQSPKQLPPSSQLHPHAPSYSQTHTSAVLAQQHNQPQNFNSSGQLPFSQPAPSHESSGLGAQLPLSQAMVQQGASSAAVTHTPLSMNLQSHGAAPNQQQLPTPIQPRQNSPSQLAHMLSQQKQTLQATFQTSQQAFSQLQQLMQPSNQSSTLQPSSQTIKQQSHWAGAVPHTTANAASAPSDEHTSTVPPVAINTQAVAPVKCNWTEHTSPDGYKYYYNSVTGESKWERPEELSVIEQQQKPRVLQPHNQPHPQLLSTPQLSQTPQPQLQSQFQTQMPHPQPLQQPSFHSQEGVYTQLQPANSSVNDPTRFHQGFQATQEWAWKNK 860
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5071717 5095234 + ClCG06G004470.2 Cla06g00417 274609

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00417 860 MobiDBLite consensus disorder prediction 780 860 - -
Cla06g00417 860 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 218 259 IPR000504 GO:0003723
Cla06g00417 860 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 337 400 IPR000504 GO:0003723
Cla06g00417 860 MobiDBLite consensus disorder prediction 504 526 - -
Cla06g00417 860 Gene3D - 331 422 IPR012677 -
Cla06g00417 860 SMART rrm1_1 217 321 IPR000504 GO:0003723
Cla06g00417 860 SMART rrm1_1 336 411 IPR000504 GO:0003723
Cla06g00417 860 MobiDBLite consensus disorder prediction 676 700 - -
Cla06g00417 860 MobiDBLite consensus disorder prediction 96 213 - -
Cla06g00417 860 PANTHER FLOWERING TIME CONTROL PROTEIN FCA ISOFORM X1 183 832 - -
Cla06g00417 860 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 216 325 IPR000504 GO:0003723
Cla06g00417 860 MobiDBLite consensus disorder prediction 621 655 - -
Cla06g00417 860 CDD WW 736 766 IPR001202 GO:0005515
Cla06g00417 860 ProSiteProfiles WW/rsp5/WWP domain profile. 733 766 IPR001202 GO:0005515
Cla06g00417 860 SUPERFAMILY RNA-binding domain, RBD 199 329 IPR035979 GO:0003676
Cla06g00417 860 PANTHER TRANSFORMER-2-RELATED 183 832 - -
Cla06g00417 860 CDD RRM2_FCA 336 415 IPR034645 -
Cla06g00417 860 SMART ww_5 734 766 IPR001202 GO:0005515
Cla06g00417 860 Gene3D - 204 330 IPR012677 -
Cla06g00417 860 SUPERFAMILY RNA-binding domain, RBD 335 440 IPR035979 GO:0003676
Cla06g00417 860 Gene3D - 735 777 - -
Cla06g00417 860 Pfam WW domain 737 764 IPR001202 GO:0005515
Cla06g00417 860 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 335 415 IPR000504 GO:0003723
Cla06g00417 860 MobiDBLite consensus disorder prediction 410 593 - -
Cla06g00417 860 MobiDBLite consensus disorder prediction 538 593 - -
Cla06g00417 860 SUPERFAMILY WW domain 730 766 IPR036020 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00417 - - - cmax:111494860 1180.62
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g00417 Cla-Chr6:5071717 Cla08g00733 Cla-Chr8:19630576 1.26E-13 dispersed
Cla05g02659 Cla-Chr5:37788231 Cla06g00417 Cla-Chr6:5071717 5.54E-10 transposed
Cla09g00606 Cla-Chr9:5606950 Cla06g00417 Cla-Chr6:5071717 1.66E-42 transposed
Cla10g00964 Cla-Chr10:22653263 Cla06g00417 Cla-Chr6:5071717 1.43E-07 transposed
Cla10g01104 Cla-Chr10:25313870 Cla06g00417 Cla-Chr6:5071717 7.86E-17 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g46 Blo01g00037 Blo12g00030 Bda03g01189 . Bpe04g01123 . Bma04g01118 Bma05g01000 . Cmo17g00369 . . . . . . . . . . . . . . Cla06g00417 Cam06g0439 Cec06g0445 Cco06g0444 Clacu06g0426 Cmu06g0425 Cre06g1204 . Cone15ag0721 . . . Csa06g01860 . . . . . . . . . . . . . . Cma17g00380 . Car17g00351 Cpe12g00332 Cpe17g00076 Bhi12g01943 . . . . . Lcy12g0865 . . . . . . . Lsi09g01506 . . Cme11g02092
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007086 1 1 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g00417 Cla_Chr06 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0