Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00418 ATGGCTAAGTATCTGCTTTTCCCTCTTTGTCTAATAATGTTTGAGTTTATTGCACTCGCTTCAGCGAACATGCAAGTTTCATATGGAGGAGGATACCAAAACCAGCCAACGTTTGGCACACCACCTATCTGCCCGGAGGCAGAAGCCATCATCTTCTCTTGGATCCAAACCGCCATTGCCGAGGACCACCGAATGGCAGCATCTTTGCTTCGACTCCATTTCCACGACTGCTTTGGATGTGATGCTTCTGTTTTGCTGGATGACAATGAGAACTTTGTAGGTGAAAAGACAGCAGCTCCAAATGTGAACTCACTGAGGGGATTTGAAGTGATTGATGCTATAAAATCTGATATTGAATCTGTTTGCCCACAGACAGTTTCATGTGCTGACATTCTAGCAATTGCAGCCAGAGACTCTGTTGGACTATCTGGAGGGCCCTTTTGGAAAGTGGAATTTGGAAGACGCGATAGCATAAGTGCTAGCAAATCAGCAGCACTTAACAACATTCCGGGCCCGAACTCCACTGTAGCCACCCTAGTTTCTAAGTTCCAGAACCTTGGTCTTTCTCTCAGAGATATGGTTGCTCTCTCAGGGGGGCACACACTTGGAAAAGCAAGATGTGTTACATTCAGTTCTAGGCTGCAAGCCAACAGCGGCAGTCCAAATGAAGGAGCAAACCAAGAGTTTATCGAGTCACTAAAACAGCTCTGCTCGATATCTGGTAGTAGCTCGACACTGGCACAGCTCGATGTTGTAACCCCAGCAACATTTGACAACCAATATTACATTAATCTTCTATCTGGAGAGGGGTTACTCCAGTCTGATCATGTTCTTGTGACTGGGGACTACCAGACAAGGGAGATAGTTGAAACCTACGCCGCCGACCCAGTTGCCTTCTTTGAAGATTTCAAACAGTCGATGGTGAAGATGGGAAGCCTCAAACCACCTGCTGAAACACAGACCGTGATCCGAACTAATTGTCGAACTACAAACTCCCTTGAAGCATTGCTCATCTTATCTGTGGTTTGTGTACCTTACAAAGCTATTCTTCTCTGCCTTGGAACTTCAAGGCAGCAGGAGCCTAATATCTTCATTTCATAA 1101 45.78 MAKYLLFPLCLIMFEFIALASANMQVSYGGGYQNQPTFGTPPICPEAEAIIFSWIQTAIAEDHRMAASLLRLHFHDCFGCDASVLLDDNENFVGEKTAAPNVNSLRGFEVIDAIKSDIESVCPQTVSCADILAIAARDSVGLSGGPFWKVEFGRRDSISASKSAALNNIPGPNSTVATLVSKFQNLGLSLRDMVALSGGHTLGKARCVTFSSRLQANSGSPNEGANQEFIESLKQLCSISGSSSTLAQLDVVTPATFDNQYYINLLSGEGLLQSDHVLVTGDYQTREIVETYAADPVAFFEDFKQSMVKMGSLKPPAETQTVIRTNCRTTNSLEALLILSVVCVPYKAILLCLGTSRQQEPNIFIS 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5086645 5088412 - ClCG06G004480.2 Cla06g00418 274610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00418 366 CDD secretory_peroxidase 44 328 IPR033905 GO:0004601|GO:0042744
Cla06g00418 366 ProSitePatterns Peroxidases active site signature. 66 77 IPR019794 GO:0004601
Cla06g00418 366 PRINTS Plant peroxidase signature 44 63 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla06g00418 366 PRINTS Plant peroxidase signature 305 318 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla06g00418 366 PRINTS Plant peroxidase signature 144 159 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla06g00418 366 PRINTS Plant peroxidase signature 248 263 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla06g00418 366 PRINTS Plant peroxidase signature 191 203 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla06g00418 366 PRINTS Plant peroxidase signature 264 281 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla06g00418 366 PRINTS Plant peroxidase signature 68 88 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla06g00418 366 PRINTS Plant peroxidase signature 106 119 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla06g00418 366 PRINTS Plant peroxidase signature 125 135 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla06g00418 366 Gene3D Peroxidase, domain 2 170 311 - -
Cla06g00418 366 PANTHER PEROXIDASE 72-RELATED 41 329 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla06g00418 366 SUPERFAMILY Heme-dependent peroxidases 43 331 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cla06g00418 366 ProSiteProfiles Plant heme peroxidase family profile. 33 331 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla06g00418 366 PRINTS Haem peroxidase superfamily signature 126 143 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla06g00418 366 PRINTS Haem peroxidase superfamily signature 66 80 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla06g00418 366 PRINTS Haem peroxidase superfamily signature 250 265 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla06g00418 366 PRINTS Haem peroxidase superfamily signature 144 156 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla06g00418 366 PRINTS Haem peroxidase superfamily signature 192 207 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla06g00418 366 PANTHER PEROXIDASE 40 41 329 - -
Cla06g00418 366 Pfam Peroxidase 55 295 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla06g00418 366 Gene3D - 44 331 - -
Cla06g00418 366 ProSitePatterns Peroxidases proximal heme-ligand signature. 192 202 IPR019793 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g00418 Cla-Chr6:5086645 Cla01g01943 Cla-Chr1:34110056 3.29E-99 dispersed
Cla06g00418 Cla-Chr6:5086645 Cla07g00832 Cla-Chr7:23049341 1.34E-103 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00418 K00430 - csv:101205763 587.415