Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00419 ATGCCACGTCGATGGGCCACCGGTGGTCCCGGTGCATTTAATGGGAAACACCGTCCCTCAGTCGACATATTCCGTACGCATAACAACCGACACCTGCCGGAGGAGAAGAAGAAGGAAGAAGTTTTGAGAAATAGAGATCAGATGGGAAATTCTGGATTGTTATTCTCCGATGCGATTATTCCCAATAATAATAATATGTTCGATTTTCCATTCATCGACTCCACTGATTCTTCTTCTTCTTCTTCTTTTAAGCCTTCCACTTTCTTGGATTTGTTAGCCACCCAAGATTACACCCCTTCTTTATTCGATCTTTTCTCTCCTCCGCCGCCGCCTCCTCCTCCTCCTCCTCCACCACCCCCCTCCTCCGCCGTGCCTGAGTCATCCGAAGTCCTCAATACTCCTCCCACTCCTAACTCCTCCTCCGTCTCTTGCTCCTCCACCGAACGCCTTCTCGACGCCGATGATGCCGATCGGGATAAATCGCCTTTCAACAAACAGTTGAAAGCAAAAAAGAAAAATCAAAAAAGGGGAAGAGAACCGAGATTTGCGTTCATGACAAAGAGCGAAGTGGATCATCTAGACGACGGTTACAGATGGCGAAAATACGGTCAAAAAGCCGTTAAAAACAGCCCTTATCCAAGAAGTTATTACCGTTGCACCACCGCCGGCTGCGGCGTCAAAAAACGAGTCGAACGATCCTCGGACGACCCTTCCGTCGTCGTCACCACTTACGAAGGCCAACACACTCATCAAAGTCCAATCATGCCACGTGGAGCTACATCAGCCGGCGCCGCTGCCTTCGCCTCACCCCAACCGCCGCTTGTTTTCCCACAGCCGCAATTATTCCGAAACCACCATCAGCAATATACGTACGCTCCGGCGCCGCCTGTGGACGTTGTCACGTGCGGCCGAGTGTTTGATCCCGTGTTTCATAGTTTTGGTGGTGATGAACGTCGTCGTATTGATGGAATAACTTGTTCTAATTCTGATTCTTTCCAAGACCATGGCCTTCTACAAGATATGATCGTACCCTCCTCCAACTCCTTACAAATCCCAGAAGAAGATAAACAAAATTAA 1077 49.12 MPRRWATGGPGAFNGKHRPSVDIFRTHNNRHLPEEKKKEEVLRNRDQMGNSGLLFSDAIIPNNNNMFDFPFIDSTDSSSSSSFKPSTFLDLLATQDYTPSLFDLFSPPPPPPPPPPPPPPSSAVPESSEVLNTPPTPNSSSVSCSSTERLLDADDADRDKSPFNKQLKAKKKNQKRGREPRFAFMTKSEVDHLDDGYRWRKYGQKAVKNSPYPRSYYRCTTAGCGVKKRVERSSDDPSVVVTTYEGQHTHQSPIMPRGATSAGAAAFASPQPPLVFPQPQLFRNHHQQYTYAPAPPVDVVTCGRVFDPVFHSFGGDERRRIDGITCSNSDSFQDHGLLQDMIVPSSNSLQIPEEDKQN 358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5093567 5095514 - ClCG06G004490.2 Cla06g00419 274611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00419 358 MobiDBLite consensus disorder prediction 99 182 - -
Cla06g00419 358 MobiDBLite consensus disorder prediction 150 166 - -
Cla06g00419 358 MobiDBLite consensus disorder prediction 125 148 - -
Cla06g00419 358 ProSiteProfiles WRKY domain profile. 188 253 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla06g00419 358 Gene3D WRKY domain 177 254 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cla06g00419 358 SMART WRKY_cls 193 252 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla06g00419 358 PANTHER WRKY TRANSCRIPTION FACTOR 48-RELATED 90 343 - -
Cla06g00419 358 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 90 343 IPR044810 GO:0003700
Cla06g00419 358 MobiDBLite consensus disorder prediction 103 124 - -
Cla06g00419 358 SUPERFAMILY WRKY DNA-binding domain 185 253 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cla06g00419 358 Pfam WRKY DNA -binding domain 194 251 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla05g00716 Cla06g00419 CCT
Cla05g00716 Cla06g00419 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01802 Cla-Chr2:33057673 Cla06g00419 Cla-Chr6:5093567 1.02E-40 dispersed
Cla06g00419 Cla-Chr6:5093567 Cla08g01030 Cla-Chr8:23025947 2.65E-49 dispersed
Cla08g01001 Cla-Chr8:22764972 Cla06g00419 Cla-Chr6:5093567 4.15E-31 dispersed
Cla11g00902 Cla-Chr11:15370665 Cla06g00419 Cla-Chr6:5093567 3.84E-32 dispersed
Cla10g01103 Cla-Chr10:25306121 Cla06g00419 Cla-Chr6:5093567 1.25E-50 wgd
Cla05g00716 Cla-Chr5:6696711 Cla06g00419 Cla-Chr6:5093567 1.32E-61 wgd
Cla06g00419 Cla-Chr6:5093567 Cla09g00458 Cla-Chr9:4387274 3.48E-43 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61243 PF03106 WRKY 7.30E-27 CL0274 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00419 - - csv:101205991 399.438