Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00420 ATGGCGTCATCTGTTCTTTCGAATTCCGATCGCGCGCGGGAGTCTTCAAGGAAGCAAAAGAAGAAGAAAAGCCACGGCAACAGAGATCATCATCAAAACCAGAATCATATTAAATGGAAATCTCAAGCTCAACAGGAAATTTACTCGTCCAAGCTCGTACGAGCATTGAATCAAGTGAGACTCGGTCCTTCCAACGAAGCGCCGCCACGCCGCGGTAGAGCTGTACGCGAGGCTGCCGATAGAGTCCTTGCCGTTGCCGCCAAGGGGAGAACCAGGTGGAGTCGAGCCCTATTAACGAACAGGTTGAAGCTCAAGTTCAGGAAGCCCAAGAGACAGAGGTCAGCATCCACCGCTGGAAACAACCGGTCAAAGAAACCTAGAGTCAGCGTATTGCGGTTGAGACGGAAATCCTTACCGGCGGTACAAAGGAAAGTTAGGGTTCTTGGCCGGCTAGTTCCCGGTTGCCGGAAAGAACCGTTGCCGGTTATTCTGGAAGAAGCTACCGATTACATAGCTGCCCTTGAAATGCAAGTTCGAGCCATGAGTGCCCTTGCTGAGTTGCTTTCGGCTTCAACTTCTGCTGCAGGCTCTAGTTCGACTCCTTCAAGCTGA 612 51.47 MASSVLSNSDRARESSRKQKKKKSHGNRDHHQNQNHIKWKSQAQQEIYSSKLVRALNQVRLGPSNEAPPRRGRAVREAADRVLAVAAKGRTRWSRALLTNRLKLKFRKPKRQRSASTAGNNRSKKPRVSVLRLRRKSLPAVQRKVRVLGRLVPGCRKEPLPVILEEATDYIAALEMQVRAMSALAELLSASTSAAGSSSTPSS 203
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 5128434 5129045 - ClCG06G004500.1 Cla06g00420 274612
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00420 203 MobiDBLite consensus disorder prediction 1 41 - -
Cla06g00420 203 PANTHER TRANSCRIPTION FACTOR BHLH148-LIKE ISOFORM X1 15 201 - -
Cla06g00420 203 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 125 174 IPR011598 GO:0046983
Cla06g00420 203 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 15 201 IPR044660 GO:0006355
Cla06g00420 203 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 141 191 IPR036638 GO:0046983
Cla06g00420 203 CDD bHLH_AtIBH1_like 130 185 IPR044549 GO:0006355
Cla06g00420 203 MobiDBLite consensus disorder prediction 104 129 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g01697 Cla-Chr3:32895336 Cla06g00420 Cla-Chr6:5128434 3.10E-49 dispersed
Cla06g00420 Cla-Chr6:5128434 Cla02g01446 Cla-Chr2:29000714 9.35E-07 dispersed
Cla02g01466 Cla-Chr2:29189932 Cla06g00420 Cla-Chr6:5128434 9.49E-43 wgd
Cla05g00714 Cla-Chr5:6658962 Cla06g00420 Cla-Chr6:5128434 4.87E-76 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00420 - - csv:101220618 305.064