Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla06g00420 | ATGGCGTCATCTGTTCTTTCGAATTCCGATCGCGCGCGGGAGTCTTCAAGGAAGCAAAAGAAGAAGAAAAGCCACGGCAACAGAGATCATCATCAAAACCAGAATCATATTAAATGGAAATCTCAAGCTCAACAGGAAATTTACTCGTCCAAGCTCGTACGAGCATTGAATCAAGTGAGACTCGGTCCTTCCAACGAAGCGCCGCCACGCCGCGGTAGAGCTGTACGCGAGGCTGCCGATAGAGTCCTTGCCGTTGCCGCCAAGGGGAGAACCAGGTGGAGTCGAGCCCTATTAACGAACAGGTTGAAGCTCAAGTTCAGGAAGCCCAAGAGACAGAGGTCAGCATCCACCGCTGGAAACAACCGGTCAAAGAAACCTAGAGTCAGCGTATTGCGGTTGAGACGGAAATCCTTACCGGCGGTACAAAGGAAAGTTAGGGTTCTTGGCCGGCTAGTTCCCGGTTGCCGGAAAGAACCGTTGCCGGTTATTCTGGAAGAAGCTACCGATTACATAGCTGCCCTTGAAATGCAAGTTCGAGCCATGAGTGCCCTTGCTGAGTTGCTTTCGGCTTCAACTTCTGCTGCAGGCTCTAGTTCGACTCCTTCAAGCTGA | 612 | 51.47 | MASSVLSNSDRARESSRKQKKKKSHGNRDHHQNQNHIKWKSQAQQEIYSSKLVRALNQVRLGPSNEAPPRRGRAVREAADRVLAVAAKGRTRWSRALLTNRLKLKFRKPKRQRSASTAGNNRSKKPRVSVLRLRRKSLPAVQRKVRVLGRLVPGCRKEPLPVILEEATDYIAALEMQVRAMSALAELLSASTSAAGSSSTPSS | 203 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 5128434 | 5129045 | - | ClCG06G004500.1 | Cla06g00420 | 274612 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla06g00420 | 203 | MobiDBLite | consensus disorder prediction | 1 | 41 | - | - | |
| Cla06g00420 | 203 | PANTHER | TRANSCRIPTION FACTOR BHLH148-LIKE ISOFORM X1 | 15 | 201 | - | - | |
| Cla06g00420 | 203 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 125 | 174 | IPR011598 | GO:0046983 | |
| Cla06g00420 | 203 | PANTHER | TRANSCRIPTION FACTOR IBH1-LIKE 1 | 15 | 201 | IPR044660 | GO:0006355 | |
| Cla06g00420 | 203 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 141 | 191 | IPR036638 | GO:0046983 | |
| Cla06g00420 | 203 | CDD | bHLH_AtIBH1_like | 130 | 185 | IPR044549 | GO:0006355 | |
| Cla06g00420 | 203 | MobiDBLite | consensus disorder prediction | 104 | 129 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla03g01697 | Cla-Chr3:32895336 | Cla06g00420 | Cla-Chr6:5128434 | 3.10E-49 | dispersed | |
| Cla06g00420 | Cla-Chr6:5128434 | Cla02g01446 | Cla-Chr2:29000714 | 9.35E-07 | dispersed | |
| Cla02g01466 | Cla-Chr2:29189932 | Cla06g00420 | Cla-Chr6:5128434 | 9.49E-43 | wgd | |
| Cla05g00714 | Cla-Chr5:6658962 | Cla06g00420 | Cla-Chr6:5128434 | 4.87E-76 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla06g00420 | - | - | csv:101220618 | 305.064 |