Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00426 ATGATTGGGCTTTTGAACGCTTACTCTAAATTTGGGCTTACGCCTGGGCTCGCTCTACTTTTTGTGGCTGCAGTTGGGCTTTCGTCAAGTATTGGGCTTACATTTGGGCCTGGACGCCGATTTCCTCTCTACTCTCAGTGGAGGACGAGTTGGAAATTGGAGGTGAGGGTTTTAGTGATCTTAGCTCCTCGCCGTCGCCGATTTAAAATGGAAGCCGGAGATGATGGAGTCGAGAGGTTGGTTGATTCGAAGGATATGCAGCAACAAAGCAAAGCCTTCGATAAGCTCACTGATCGCGTTGAAGACCGTCAACTCGATTCCACTCGTGTTCAAGAGGCAATGGCATCTATTGCTGCATCGGCCGAAGCCGATTGGAACGCCATGATGTTGAGGTTGCATGGAGTGTTTACTAAGCAGTCATTATATTTTTCTTCTTTCAGAGAGAAAGAGCTTGCTGCTGTCAAGATAAATGCAGCTGATGTCGACATAATCGCAAATGAACTCGAGTTGGACAAGAAGGTCGCCGAGAGAACGTTGCGAGAGCACAAAGGCGACGCTGTTGCTGCTATACGGTATTTACTACGTTAA 588 47.62 MIGLLNAYSKFGLTPGLALLFVAAVGLSSSIGLTFGPGRRFPLYSQWRTSWKLEVRVLVILAPRRRRFKMEAGDDGVERLVDSKDMQQQSKAFDKLTDRVEDRQLDSTRVQEAMASIAASAEADWNAMMLRLHGVFTKQSLYFSSFREKELAAVKINAADVDIIANELELDKKVAERTLREHKGDAVAAIRYLLR 195
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5194441 5196711 + ClCG06G004560.1 Cla06g00426 274618

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00426 195 PANTHER BNAA05G30770D PROTEIN 74 194 - -
Cla06g00426 195 Coils Coil 165 185 - -
Cla06g00426 195 Pfam HYPK UBA domain 154 194 IPR044034 -
Cla06g00426 195 CDD UBA_HYPK 154 194 IPR038922 -
Cla06g00426 195 PANTHER HUNTINGTIN-INTERACTING PROTEIN K FAMILY MEMBER 74 194 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00426 - - - bhj:120092812 214.542
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g61 . . . . . . . . Cmo08g01245 Cmo17g00360 . . . . . . . . . . . . . . Cla06g00426 Cam06g0448 Cec06g0455 Cco06g0454 Clacu06g0435 Cmu06g0436 Cre06g1213 . . Cone7ag0099 Cone4ag0105 . Csa06g01869 Chy11g01574 . . Blo07g00143 Bda11g00499 . . Bpe13g00698 . Bma06g01465 Sed09g0311 . . . Cma17g00370 . Car17g00345 Cpe12g00325 . Bhi12g01936 Tan06g2768 Cmetu11g2114 . . . Lcy12g0853 . . . . . . . Lsi09g01494 . . Cme11g02083
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011014 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g00426 Cla_Chr06 FPKM 23.285152 24.474831 28.208313 27.819952 20.035292 20.175457 20.975502 47.373665 42.870701 45.044373