Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00427 ATGGGAACTCCACCAGCAGAGGAGCTTCTGAGGAAGATCCAAGAGCTGGAGGAGGGTCAAGCGCATCTCAAGAAAGAGATGTCCAAACTTCTTCTCTCTGGAACTGCCGCCGATTCCAACTCCGACCACCAAATCCACCACCACCATCATCACCATCAACGTTCTCAATCCATTTCACCTCAGCGTTCTAGATTTGCTACGGCTCGGAGAAGAGGTGGCGCTGCTGGAGGTTTAGACGCCGCCGCCGCCGCCGCCGCCGCCTGGAAAAGAGGCTCTTCATCATTTCGACATTCTTCTCCACTTCAGAGAGAAAGTAGGACTCGTGACCCTTTGAATGCCGCCGTCGCCGGAGGTGGCGGCGGCGGCGGCTCTGGCCCCGCCGCTGTGAATTTCACCAACAAACAGTATCTGAATATCTTGCAGTCAATGGGACAGCCTGTTTATATTTTTGACCTTAATTATCATATAATTTACTGGAATCGAGCTGCTGAAATTGTATATGGGTATTCTGCGGCGGAGGCTCTTGGCCAGGACGCCATTGAGCTTCTAGTAGATCCTGAGGATTTCACCATTGCAAACCATGTAATTCTTCGTGTCATGGCGGGTGAGAATTGGACTGGTCACTTACCTGTAAAGAACAAGATGGGGCAAAAATTTATAGTTGTTGCCGCCAACACTCCATTCTACGACGATGGTGCATTGGTTGGGATTATCTGTGTATCGAGCGATTTGCGGCCATTTCAAGATTTGAAGATTCCTCTATCAGTAGGTTCTAAACAGCAGGATGCAGATCCGAGCATGGTCCGATCGCGAATCCCAGTTTCAGCTAAGCTTGGTCTTGATCCTCAGCAGCCTCTTCAAGTGGCAATTGCTTCAAAGTTATCCAACTTGGCATCAAAGGTAAGCAACAAAGTCAAGTTGAAAATTCGAACTGGAGAAAACAGTTCGGATCGTGAAGGTGGAAGTGGAGATAGTTATCACTCTGATCTTGGCTATCCAGAGGCAGTTCTTTGTGACCATCGGGACGATGCAAATTCGAGCGGAGCTAGCACGCCTCGAGGAGATTCCACGGCTCATGGTGCATTCTCTCAGGTTGAAGAGAAGTTATCTGGCAAACTGGTCAGGGATTCTGGTGATGAGGTTAAAGGAAAACCTACCATCCAGAAGATCTTATCCTCAAAGGCAGAAGAATGGATTGCCAAGAAAGGCTTATCCTGGCCTTGGAAAGGGACCGAGCAGGAAGGAGGATCTGAAACAAAGGCAGCCCGTTTTGTTTGGCCTTGGTTACAAATTGATCAAGAAGCCGAACCAGCTAATCAAAAGAGTTCCTCTATTTCTGGGAAACCAGAAATGCAGCAAAACGACAGTCATCGAGCAGTCAATAATGAGGCCTCAGGATCGTGGTCGTCGTTCAATGTTAACAGCACTAGCAGTGTCAGTAGCTGTGGAAGTACCAGTAGTAGTGCTGTCAACAAAGTTGACACAGATATAGACTGTTTGGATCATGAAATCTTGTGGGAAGACCTTACCATCGGGGAGCAAATAGGGCAAGGTTCTTGTGGAACTGTCTATCATGCACTGTGGTATGGATCAGATGTTGCCGTCAAAGTGTTCTCCAAACAAGAGTATTCAGATGATGTGATTCTCTCCTTCAAACAGGAGGTATCCCTGATGAAAAAGCTTAGACACCCCAATATTCTTCTCTTTATGGGAGTTGTGACTTCACCTCAGCGTCTCTGCATTGTCACAGAATTCCTTCCACGTGGAAGTTTGTTTCGTTTACTACAGAGGAACACAGGCAAATTAGATTGGAGACGCCGTGTTCATATGGCTTTGGACATTGCGCGAGGCATGAACTATCTTCACCATTGCAATCCACCTATTATTCACCGAGATTTGAAATCATCGAACCTCTTAATCGATAAAAACTGGACTGTGAAGGTTGGAGATTTTGGTCTATCTCGGCTTAAGCATGAGACTTATCTAACAACTAAGACAGGAAAGGGCACGCCTCAATGGATGGCACCTGAAGTTCTTCGTAATGAGCCCTCGGATGAGAAGTCCGACATATACAGTTTTGGAGTCATATTGTGGGAGCTTGCAACTGAGAAGATCCCTTGGGAAAATCTCAATTCGATGCAGGTAATTGGTGCTGTTGGGTTCATGAACCAACGTCTTGAAATCCCCAAGGATGTGGATCCACAATGGGCTTCTATTATTGAGAGCTGCTGGCAAAGCGAACCTTCAAACCGGCCATCATTCCAAGTTCTGATAGAAAAGCTTAGAGAAATGCAGAGGAAGTTTGCTATGCAATTACAGGCAGCTCGTTCTGGTGGAGAGAATAATAATAATAATAACAATAATAATAATAACAATAATAACAACATCCCTCAAAAGGAAACATAA 2406 46.09 MGTPPAEELLRKIQELEEGQAHLKKEMSKLLLSGTAADSNSDHQIHHHHHHHQRSQSISPQRSRFATARRRGGAAGGLDAAAAAAAAWKRGSSSFRHSSPLQRESRTRDPLNAAVAGGGGGGGSGPAAVNFTNKQYLNILQSMGQPVYIFDLNYHIIYWNRAAEIVYGYSAAEALGQDAIELLVDPEDFTIANHVILRVMAGENWTGHLPVKNKMGQKFIVVAANTPFYDDGALVGIICVSSDLRPFQDLKIPLSVGSKQQDADPSMVRSRIPVSAKLGLDPQQPLQVAIASKLSNLASKVSNKVKLKIRTGENSSDREGGSGDSYHSDLGYPEAVLCDHRDDANSSGASTPRGDSTAHGAFSQVEEKLSGKLVRDSGDEVKGKPTIQKILSSKAEEWIAKKGLSWPWKGTEQEGGSETKAARFVWPWLQIDQEAEPANQKSSSISGKPEMQQNDSHRAVNNEASGSWSSFNVNSTSSVSSCGSTSSSAVNKVDTDIDCLDHEILWEDLTIGEQIGQGSCGTVYHALWYGSDVAVKVFSKQEYSDDVILSFKQEVSLMKKLRHPNILLFMGVVTSPQRLCIVTEFLPRGSLFRLLQRNTGKLDWRRRVHMALDIARGMNYLHHCNPPIIHRDLKSSNLLIDKNWTVKVGDFGLSRLKHETYLTTKTGKGTPQWMAPEVLRNEPSDEKSDIYSFGVILWELATEKIPWENLNSMQVIGAVGFMNQRLEIPKDVDPQWASIIESCWQSEPSNRPSFQVLIEKLREMQRKFAMQLQAARSGGENNNNNNNNNNNNNNNIPQKET 801
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5198086 5203070 - ClCG06G004570.1 Cla06g00427 274619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00427 801 TIGRFAM sensory_box: PAS domain S-box protein 134 244 IPR000014 -
Cla06g00427 801 ProSiteProfiles PAS repeat profile. 132 203 IPR000014 -
Cla06g00427 801 MobiDBLite consensus disorder prediction 35 72 - -
Cla06g00427 801 Gene3D Transferase(Phosphotransferase) domain 1 587 801 - -
Cla06g00427 801 MobiDBLite consensus disorder prediction 775 801 - -
Cla06g00427 801 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 38 782 - -
Cla06g00427 801 MobiDBLite consensus disorder prediction 93 123 - -
Cla06g00427 801 Gene3D Phosphorylase Kinase; domain 1 502 586 - -
Cla06g00427 801 MobiDBLite consensus disorder prediction 369 383 - -
Cla06g00427 801 MobiDBLite consensus disorder prediction 435 465 - -
Cla06g00427 801 MobiDBLite consensus disorder prediction 773 801 - -
Cla06g00427 801 SUPERFAMILY Protein kinase-like (PK-like) 492 759 IPR011009 -
Cla06g00427 801 CDD STKc_MAP3K-like 515 761 - -
Cla06g00427 801 Pfam PAS fold 135 243 IPR013767 GO:0006355
Cla06g00427 801 SMART serkin_6 509 769 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla06g00427 801 Pfam Protein tyrosine and serine/threonine kinase 509 761 IPR001245 GO:0004672|GO:0006468
Cla06g00427 801 SUPERFAMILY PYP-like sensor domain (PAS domain) 136 243 IPR035965 -
Cla06g00427 801 MobiDBLite consensus disorder prediction 344 358 - -
Cla06g00427 801 ProSiteProfiles Protein kinase domain profile. 509 769 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla06g00427 801 PRINTS Tyrosine kinase catalytic domain signature 583 596 IPR001245 GO:0004672|GO:0006468
Cla06g00427 801 PRINTS Tyrosine kinase catalytic domain signature 622 640 IPR001245 GO:0004672|GO:0006468
Cla06g00427 801 PRINTS Tyrosine kinase catalytic domain signature 669 679 IPR001245 GO:0004672|GO:0006468
Cla06g00427 801 PRINTS Tyrosine kinase catalytic domain signature 688 710 IPR001245 GO:0004672|GO:0006468
Cla06g00427 801 PRINTS Tyrosine kinase catalytic domain signature 732 754 IPR001245 GO:0004672|GO:0006468
Cla06g00427 801 Coils Coil 6 26 - -
Cla06g00427 801 PANTHER SERINE/THREONINE-PROTEIN KINASE DDB_G0282963 ISOFORM X1-RELATED 38 782 - -
Cla06g00427 801 Gene3D PAS domain 144 246 - -
Cla06g00427 801 ProSitePatterns Serine/Threonine protein kinases active-site signature. 628 640 IPR008271 GO:0004672|GO:0006468
Cla06g00427 801 SMART pas_2 134 201 IPR000014 -
Cla06g00427 801 MobiDBLite consensus disorder prediction 340 383 - -
Cla06g00427 801 CDD PAS 143 244 IPR000014 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g00427 Cla-Chr6:5198086 Cla11g01429 Cla-Chr11:27854706 1.07E-101 dispersed
Cla06g00427 Cla-Chr6:5198086 Cla04g00964 Cla-Chr4:24754951 4.43E-107 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80621 PF07714 PK_Tyr_Ser-Thr 3.70E-69 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00427 - - bhj:120067055 1379.77