Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla06g00427 | ATGGGAACTCCACCAGCAGAGGAGCTTCTGAGGAAGATCCAAGAGCTGGAGGAGGGTCAAGCGCATCTCAAGAAAGAGATGTCCAAACTTCTTCTCTCTGGAACTGCCGCCGATTCCAACTCCGACCACCAAATCCACCACCACCATCATCACCATCAACGTTCTCAATCCATTTCACCTCAGCGTTCTAGATTTGCTACGGCTCGGAGAAGAGGTGGCGCTGCTGGAGGTTTAGACGCCGCCGCCGCCGCCGCCGCCGCCTGGAAAAGAGGCTCTTCATCATTTCGACATTCTTCTCCACTTCAGAGAGAAAGTAGGACTCGTGACCCTTTGAATGCCGCCGTCGCCGGAGGTGGCGGCGGCGGCGGCTCTGGCCCCGCCGCTGTGAATTTCACCAACAAACAGTATCTGAATATCTTGCAGTCAATGGGACAGCCTGTTTATATTTTTGACCTTAATTATCATATAATTTACTGGAATCGAGCTGCTGAAATTGTATATGGGTATTCTGCGGCGGAGGCTCTTGGCCAGGACGCCATTGAGCTTCTAGTAGATCCTGAGGATTTCACCATTGCAAACCATGTAATTCTTCGTGTCATGGCGGGTGAGAATTGGACTGGTCACTTACCTGTAAAGAACAAGATGGGGCAAAAATTTATAGTTGTTGCCGCCAACACTCCATTCTACGACGATGGTGCATTGGTTGGGATTATCTGTGTATCGAGCGATTTGCGGCCATTTCAAGATTTGAAGATTCCTCTATCAGTAGGTTCTAAACAGCAGGATGCAGATCCGAGCATGGTCCGATCGCGAATCCCAGTTTCAGCTAAGCTTGGTCTTGATCCTCAGCAGCCTCTTCAAGTGGCAATTGCTTCAAAGTTATCCAACTTGGCATCAAAGGTAAGCAACAAAGTCAAGTTGAAAATTCGAACTGGAGAAAACAGTTCGGATCGTGAAGGTGGAAGTGGAGATAGTTATCACTCTGATCTTGGCTATCCAGAGGCAGTTCTTTGTGACCATCGGGACGATGCAAATTCGAGCGGAGCTAGCACGCCTCGAGGAGATTCCACGGCTCATGGTGCATTCTCTCAGGTTGAAGAGAAGTTATCTGGCAAACTGGTCAGGGATTCTGGTGATGAGGTTAAAGGAAAACCTACCATCCAGAAGATCTTATCCTCAAAGGCAGAAGAATGGATTGCCAAGAAAGGCTTATCCTGGCCTTGGAAAGGGACCGAGCAGGAAGGAGGATCTGAAACAAAGGCAGCCCGTTTTGTTTGGCCTTGGTTACAAATTGATCAAGAAGCCGAACCAGCTAATCAAAAGAGTTCCTCTATTTCTGGGAAACCAGAAATGCAGCAAAACGACAGTCATCGAGCAGTCAATAATGAGGCCTCAGGATCGTGGTCGTCGTTCAATGTTAACAGCACTAGCAGTGTCAGTAGCTGTGGAAGTACCAGTAGTAGTGCTGTCAACAAAGTTGACACAGATATAGACTGTTTGGATCATGAAATCTTGTGGGAAGACCTTACCATCGGGGAGCAAATAGGGCAAGGTTCTTGTGGAACTGTCTATCATGCACTGTGGTATGGATCAGATGTTGCCGTCAAAGTGTTCTCCAAACAAGAGTATTCAGATGATGTGATTCTCTCCTTCAAACAGGAGGTATCCCTGATGAAAAAGCTTAGACACCCCAATATTCTTCTCTTTATGGGAGTTGTGACTTCACCTCAGCGTCTCTGCATTGTCACAGAATTCCTTCCACGTGGAAGTTTGTTTCGTTTACTACAGAGGAACACAGGCAAATTAGATTGGAGACGCCGTGTTCATATGGCTTTGGACATTGCGCGAGGCATGAACTATCTTCACCATTGCAATCCACCTATTATTCACCGAGATTTGAAATCATCGAACCTCTTAATCGATAAAAACTGGACTGTGAAGGTTGGAGATTTTGGTCTATCTCGGCTTAAGCATGAGACTTATCTAACAACTAAGACAGGAAAGGGCACGCCTCAATGGATGGCACCTGAAGTTCTTCGTAATGAGCCCTCGGATGAGAAGTCCGACATATACAGTTTTGGAGTCATATTGTGGGAGCTTGCAACTGAGAAGATCCCTTGGGAAAATCTCAATTCGATGCAGGTAATTGGTGCTGTTGGGTTCATGAACCAACGTCTTGAAATCCCCAAGGATGTGGATCCACAATGGGCTTCTATTATTGAGAGCTGCTGGCAAAGCGAACCTTCAAACCGGCCATCATTCCAAGTTCTGATAGAAAAGCTTAGAGAAATGCAGAGGAAGTTTGCTATGCAATTACAGGCAGCTCGTTCTGGTGGAGAGAATAATAATAATAATAACAATAATAATAATAACAATAATAACAACATCCCTCAAAAGGAAACATAA | 2406 | 46.09 | MGTPPAEELLRKIQELEEGQAHLKKEMSKLLLSGTAADSNSDHQIHHHHHHHQRSQSISPQRSRFATARRRGGAAGGLDAAAAAAAAWKRGSSSFRHSSPLQRESRTRDPLNAAVAGGGGGGGSGPAAVNFTNKQYLNILQSMGQPVYIFDLNYHIIYWNRAAEIVYGYSAAEALGQDAIELLVDPEDFTIANHVILRVMAGENWTGHLPVKNKMGQKFIVVAANTPFYDDGALVGIICVSSDLRPFQDLKIPLSVGSKQQDADPSMVRSRIPVSAKLGLDPQQPLQVAIASKLSNLASKVSNKVKLKIRTGENSSDREGGSGDSYHSDLGYPEAVLCDHRDDANSSGASTPRGDSTAHGAFSQVEEKLSGKLVRDSGDEVKGKPTIQKILSSKAEEWIAKKGLSWPWKGTEQEGGSETKAARFVWPWLQIDQEAEPANQKSSSISGKPEMQQNDSHRAVNNEASGSWSSFNVNSTSSVSSCGSTSSSAVNKVDTDIDCLDHEILWEDLTIGEQIGQGSCGTVYHALWYGSDVAVKVFSKQEYSDDVILSFKQEVSLMKKLRHPNILLFMGVVTSPQRLCIVTEFLPRGSLFRLLQRNTGKLDWRRRVHMALDIARGMNYLHHCNPPIIHRDLKSSNLLIDKNWTVKVGDFGLSRLKHETYLTTKTGKGTPQWMAPEVLRNEPSDEKSDIYSFGVILWELATEKIPWENLNSMQVIGAVGFMNQRLEIPKDVDPQWASIIESCWQSEPSNRPSFQVLIEKLREMQRKFAMQLQAARSGGENNNNNNNNNNNNNNNIPQKET | 801 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 5198086 | 5203070 | - | ClCG06G004570.1 | Cla06g00427 | 274619 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla06g00427 | 801 | TIGRFAM | sensory_box: PAS domain S-box protein | 134 | 244 | IPR000014 | - | |
Cla06g00427 | 801 | ProSiteProfiles | PAS repeat profile. | 132 | 203 | IPR000014 | - | |
Cla06g00427 | 801 | MobiDBLite | consensus disorder prediction | 35 | 72 | - | - | |
Cla06g00427 | 801 | Gene3D | Transferase(Phosphotransferase) domain 1 | 587 | 801 | - | - | |
Cla06g00427 | 801 | MobiDBLite | consensus disorder prediction | 775 | 801 | - | - | |
Cla06g00427 | 801 | PANTHER | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED | 38 | 782 | - | - | |
Cla06g00427 | 801 | MobiDBLite | consensus disorder prediction | 93 | 123 | - | - | |
Cla06g00427 | 801 | Gene3D | Phosphorylase Kinase; domain 1 | 502 | 586 | - | - | |
Cla06g00427 | 801 | MobiDBLite | consensus disorder prediction | 369 | 383 | - | - | |
Cla06g00427 | 801 | MobiDBLite | consensus disorder prediction | 435 | 465 | - | - | |
Cla06g00427 | 801 | MobiDBLite | consensus disorder prediction | 773 | 801 | - | - | |
Cla06g00427 | 801 | SUPERFAMILY | Protein kinase-like (PK-like) | 492 | 759 | IPR011009 | - | |
Cla06g00427 | 801 | CDD | STKc_MAP3K-like | 515 | 761 | - | - | |
Cla06g00427 | 801 | Pfam | PAS fold | 135 | 243 | IPR013767 | GO:0006355 | |
Cla06g00427 | 801 | SMART | serkin_6 | 509 | 769 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cla06g00427 | 801 | Pfam | Protein tyrosine and serine/threonine kinase | 509 | 761 | IPR001245 | GO:0004672|GO:0006468 | |
Cla06g00427 | 801 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 136 | 243 | IPR035965 | - | |
Cla06g00427 | 801 | MobiDBLite | consensus disorder prediction | 344 | 358 | - | - | |
Cla06g00427 | 801 | ProSiteProfiles | Protein kinase domain profile. | 509 | 769 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cla06g00427 | 801 | PRINTS | Tyrosine kinase catalytic domain signature | 583 | 596 | IPR001245 | GO:0004672|GO:0006468 | |
Cla06g00427 | 801 | PRINTS | Tyrosine kinase catalytic domain signature | 622 | 640 | IPR001245 | GO:0004672|GO:0006468 | |
Cla06g00427 | 801 | PRINTS | Tyrosine kinase catalytic domain signature | 669 | 679 | IPR001245 | GO:0004672|GO:0006468 | |
Cla06g00427 | 801 | PRINTS | Tyrosine kinase catalytic domain signature | 688 | 710 | IPR001245 | GO:0004672|GO:0006468 | |
Cla06g00427 | 801 | PRINTS | Tyrosine kinase catalytic domain signature | 732 | 754 | IPR001245 | GO:0004672|GO:0006468 | |
Cla06g00427 | 801 | Coils | Coil | 6 | 26 | - | - | |
Cla06g00427 | 801 | PANTHER | SERINE/THREONINE-PROTEIN KINASE DDB_G0282963 ISOFORM X1-RELATED | 38 | 782 | - | - | |
Cla06g00427 | 801 | Gene3D | PAS domain | 144 | 246 | - | - | |
Cla06g00427 | 801 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 628 | 640 | IPR008271 | GO:0004672|GO:0006468 | |
Cla06g00427 | 801 | SMART | pas_2 | 134 | 201 | IPR000014 | - | |
Cla06g00427 | 801 | MobiDBLite | consensus disorder prediction | 340 | 383 | - | - | |
Cla06g00427 | 801 | CDD | PAS | 143 | 244 | IPR000014 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla06g00427 | Cla-Chr6:5198086 | Cla11g01429 | Cla-Chr11:27854706 | 1.07E-101 | dispersed | |
Cla06g00427 | Cla-Chr6:5198086 | Cla04g00964 | Cla-Chr4:24754951 | 4.43E-107 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
80621 | PF07714 | PK_Tyr_Ser-Thr | 3.70E-69 | CL0016 | Cla | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla06g00427 | - | - | bhj:120067055 | 1379.77 |