Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00429 GGATGCAGCAACAGAGACATAAGCATTTCACAAAGCAAAGATTCAACATCAGGAATTCCAGAGTTCATAGTTCAAATTACAAACACTTGTCTCTCACTTGATTGTGCTCCGTCGGATATCCATCTCCATTGCGGCTGGTTTGCCTCCGCCAAGATCGTAAACCCTTCAATTTTCAAGAGAATATTTTACGATGATTGTTTGGTCAATGGAGGGAAGCCATTGAAGATCAGCCAAACCATTAGATTCACTTACTCTAATTCCTTCATTGTAGTTCTTTTACATGCAGATACGGGATCTCCAAATGTCATTACAACCACAGTTTGCCCCAGAACTAGAAACTCTTCTTTATGTCGAACCGTCTTGAAACCCGCCGGAAAATCTGACGCCCTCCTCAAAGTGGCTAATTACACTCTTACCCTTGCCCATACCACCGCCGTCGAAGGTCTCCGCCACGCACAGCGGCTGGCGGCGGCGGCCACCAATCCATTGCTTAAACAACGCTATTCCGAATGCTCACGGCGGTTTGATTTTGTGGCGAAGGGTTTAGAAGAAGCCAAAGCCGCGTTGGTTAAAGGTGGGTATATTCCACTTAGCCACGCCACCGGCGCCACCGTGGTTGAGGCTGATAGATGTGTAAAAACCTTTAAAAAGCCGCCGCGGGAACCATCGAAGCTGCCGGAGAAGGCTAAGAAAATTGGGGATATTTGTGACATTGCTGTTTCTGTTGTTGTTCTTTTGCATGCAAATACTACACAAGAAAACACCATGGCATCGACCATTTGCCCTAAAACTAGAAACTCATCTTTATGTTGGAGATTATTGAAACCCATGGGCAGCATGGACGGCCCTAAGTTGGCCAATTACACCCTCAGCCTCTCCCTTACGACTGCCGTTGAAGCTCTCCGCCATGCACGCCAACTCGAGGCAACAAACACAACCGATCCACAACTTAACAAACGATATTCGGAATGTTCACGTCGGTTCAACTCCGCCGTGGAGGGCTTAGAACAAGGCAAAGAAGCGTTGGCCACTGGTGGCTATGTTGTCCTTACATTTGCAAATATGGCTTTCCAGTCGGAGGCCGATGAATGTTTAGGTTACTTCAAACAGCCACCACCGGAACCATCATCGCTTCCGGAGAAGGCTAAGGACCTTGGAGATATTTCTGACATTGCTGCTTGGGTCTGGGTTATGGTATTTCTTTTTGGTGTTCTTTTATCCAACGTCATTCCTACGATTGTTGGTACGACGCCATCAAACAATGTAGAATCGAGTATCTGTCCAAAAACTAGGAATCCATCATTTTGCGCAAGCGTGTTGAAATCTGGTGGCAGCACAGACCTAAAAGCACTAGCCACTTACACCCTAAACCTTGCTCTTACAAATGTTGGAAAATCTATGACCCTAGCCAAGTCACTTGCATCCACAACAACCAATTCTCAACTTAAGAAACTATATTTATCTTGCTCTGAGAATTACAATAATGCCATGGGCGACGTTGAAAATGCTCAAAACTATTTGGCCACGAGTGACTTTAATGGTGTTAATCTTGCAACTTCTGGCGTCATGACGGCAGTTGACGACTGTCAAGATAGCTTCGAGCAGCCGCTAATAGACACAAAAATGGGGAACTCTAATCTCTTAGCTTTTCTTACACTTGTTTTGTTCATCGTGGTTTCACATGCAGCATTCAACGACGTCGTTTCCACCATTTGTCCGAAAACGACGAACCCACCATTTTGTTCGAGCGTGTTGAGATCTGCGGGGACTACGGATCTGAAAGGGTTGACCGTATACGCCCTCAACCTTGCCCATACAAATGCGGCTAAGTCTGTGGCCCTAGCCAAGTCATTGGCCGCCACAGCCACCAATCCTCAACTTAAACAACGATATTCGTCTTGTGCTGGGAGCTATGACGAAGCTGTTGGTGACATTGAGGATGCCCAGAAGGACTTGGCTCTCGGTGACTTTAACGCCGTTAATACTGCAACTTCTGGTGCTATGACGGAGATTGACGATTGTCAGGATAACTTCAACCAACCACCTCCAGACACGTCAATGCTTTTGAAGAATGGTAAGACTTTGAATGATATATGCAGCATTATC 2106 46.11 GCSNRDISISQSKDSTSGIPEFIVQITNTCLSLDCAPSDIHLHCGWFASAKIVNPSIFKRIFYDDCLVNGGKPLKISQTIRFTYSNSFIVVLLHADTGSPNVITTTVCPRTRNSSLCRTVLKPAGKSDALLKVANYTLTLAHTTAVEGLRHAQRLAAAATNPLLKQRYSECSRRFDFVAKGLEEAKAALVKGGYIPLSHATGATVVEADRCVKTFKKPPREPSKLPEKAKKIGDICDIAVSVVVLLHANTTQENTMASTICPKTRNSSLCWRLLKPMGSMDGPKLANYTLSLSLTTAVEALRHARQLEATNTTDPQLNKRYSECSRRFNSAVEGLEQGKEALATGGYVVLTFANMAFQSEADECLGYFKQPPPEPSSLPEKAKDLGDISDIAAWVWVMVFLFGVLLSNVIPTIVGTTPSNNVESSICPKTRNPSFCASVLKSGGSTDLKALATYTLNLALTNVGKSMTLAKSLASTTTNSQLKKLYLSCSENYNNAMGDVENAQNYLATSDFNGVNLATSGVMTAVDDCQDSFEQPLIDTKMGNSNLLAFLTLVLFIVVSHAAFNDVVSTICPKTTNPPFCSSVLRSAGTTDLKGLTVYALNLAHTNAAKSVALAKSLAATATNPQLKQRYSSCAGSYDEAVGDIEDAQKDLALGDFNAVNTATSGAMTEIDDCQDNFNQPPPDTSMLLKNGKTLNDICSII 702
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5232125 5251108 - ClCG06G004590.1 Cla06g00429 274621

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00429 702 SMART PMEI_2 99 242 IPR006501 GO:0004857
Cla06g00429 702 SMART PMEI_2 563 702 IPR006501 GO:0004857
Cla06g00429 702 SMART PMEI_2 417 555 IPR006501 GO:0004857
Cla06g00429 702 SMART PMEI_2 252 395 IPR006501 GO:0004857
Cla06g00429 702 CDD PMEI 106 246 IPR034086 GO:0043086|GO:0046910
Cla06g00429 702 Pfam Plant invertase/pectin methylesterase inhibitor 425 542 IPR006501 GO:0004857
Cla06g00429 702 Pfam Plant invertase/pectin methylesterase inhibitor 567 701 IPR006501 GO:0004857
Cla06g00429 702 Pfam Plant invertase/pectin methylesterase inhibitor 258 371 IPR006501 GO:0004857
Cla06g00429 702 Pfam Plant invertase/pectin methylesterase inhibitor 106 239 IPR006501 GO:0004857
Cla06g00429 702 CDD PMEI 426 540 IPR034086 GO:0043086|GO:0046910
Cla06g00429 702 PANTHER PECTINESTERASE INHIBITOR-LIKE 244 394 - -
Cla06g00429 702 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 565 701 IPR035513 -
Cla06g00429 702 Gene3D Invertase/pectin methylesterase inhibitor family protein 101 246 IPR035513 -
Cla06g00429 702 Gene3D Invertase/pectin methylesterase inhibitor family protein 563 702 IPR035513 -
Cla06g00429 702 PANTHER PECTINESTERASE INHIBITOR-LIKE 244 394 - -
Cla06g00429 702 PANTHER PECTINESTERASE INHIBITOR-LIKE 547 702 - -
Cla06g00429 702 Gene3D Invertase/pectin methylesterase inhibitor family protein 253 398 IPR035513 -
Cla06g00429 702 Gene3D Invertase/pectin methylesterase inhibitor family protein 419 558 IPR035513 -
Cla06g00429 702 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 259 394 IPR035513 -
Cla06g00429 702 TIGRFAM PME_inhib: pectinesterase inhibitor domain 247 395 IPR006501 GO:0004857
Cla06g00429 702 TIGRFAM PME_inhib: pectinesterase inhibitor domain 544 701 IPR006501 GO:0004857
Cla06g00429 702 TIGRFAM PME_inhib: pectinesterase inhibitor domain 92 243 IPR006501 GO:0004857
Cla06g00429 702 TIGRFAM PME_inhib: pectinesterase inhibitor domain 398 535 IPR006501 GO:0004857
Cla06g00429 702 PANTHER PECTINESTERASE INHIBITOR-LIKE 396 539 - -
Cla06g00429 702 CDD PMEI 565 702 IPR034086 GO:0043086|GO:0046910
Cla06g00429 702 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 106 244 IPR035513 -
Cla06g00429 702 PANTHER PECTINESTERASE INHIBITOR-LIKE 396 539 - -
Cla06g00429 702 PANTHER PECTINESTERASE INHIBITOR-LIKE 88 244 - -
Cla06g00429 702 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 425 546 IPR035513 -
Cla06g00429 702 PANTHER PECTINESTERASE INHIBITOR-LIKE 88 244 - -
Cla06g00429 702 PANTHER PECTINESTERASE INHIBITOR-LIKE 547 702 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00429 - - - csv:101216104 264.618
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01459 Cla-Chr2:29121159 Cla06g00429 Cla-Chr6:5232125 8.94E-08 dispersed
Cla06g00429 Cla-Chr6:5232125 Cla11g01093 Cla-Chr11:22339982 8.79E-25 dispersed
Cla06g00429 Cla-Chr6:5232125 Cla07g00447 Cla-Chr7:6063378 1.69E-19 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g67 . . . . . Bpe14g01100 . . . . . . . . . . . . . . . . . . Cla06g00429 Cam06g0452 Cec06g0459 Cco06g0458 Clacu06g0439 Cmu06g0440 Cre06g1217 . . . . . . . . . . . Bda13g00216 . . Bma02g00928 . . . . . . . . Cpe12g00319 . Bhi12g01927 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000169 1 5 1 1 0 8 0 5 6 6 3 7 6 46 17 9 7 2 3 5 13 2 4 4 6 4 5 5 9 0 190
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g00429 Cla_Chr06 FPKM 11.961431 11.907681 8.529519 8.761895 7.427039 6.799788 7.877264 8.855952 7.645355 8.274037