Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00434 ATGGGCGCGCCAGATAGATCTCCGGCGACCTCCAATTCTATGCAGCGTGTCAAAGTATATCGTTTGAATGATGATGGAAAATGGGATGATCAAGGCACTGGGCATGTTACTGTTGACTATTTGGAGAGATCGGAGGAATTGGGGTTGTGTGTTGTTGATGAAGAGGACAACGAGACTCTACTTCTACACCGTATTAGTTCAGACGACATTTACAGAAAGCAAGAAGATACTATAATCTCGTGGAGAGATCCAGAATATTCTACAGAGTTAGCTCTTAGCTTTCAAGAGACAACTGGATGCTCATACATATGGGATCACATCTGCAATGCGCAAAGGAATCTCCATTTTAATTCTCTCAACAATGATACGTTCCACAGCATGAACAGTGAGTTGAGGGAGTTGCCTGCAATTGAGCTATCAACACTTCCCCTAATACTTAAGATTGTTGTTGAAAGTGGCATTACAGATCAGATGCGGTTAGTGGAACTCATAGTTGCCAATCAAGATTTTTTCAAAAAGCTGATGGACATATTTCATATCTGTGAAGACTTGGAAAATCTTGATGGTCTTCACATGATATATAAAATAGTCAGAGGGATCATTCTGCTGAATAGCTCACAGATCTTTGAGAAAATTTTTGGAGATGAATTAATCATGGACATCATTGGTTCTCTAGAATACGATCCAGAGTTGTCTCATGTCCAGCATCATCGTAACTTTTTGAAAGAGCATGTCATTTTCAAAGAGGCCATACCCATCAAGGATCCATTGGTTTTGTCGAAGATACATCAAACATATAGAATTGGCTATCTAAAGGATGTTGTTTTGGCTAGAGTATTGGATGAGTCCACAATTGCAAATCTAAATTCCATTATCCATGCAAACAATGCGCTGGATGACAATACATTTATTCAGGAGCTATTTGTAAGGTTGAAATTGCCAACTACCTCTGAAGAATCTAAGAAGAATTTGGTACATTTTCTGCACGAGTTTTGCAGTTTAAGTAAAAATTTACAGATGGTTCAGCAGCTACGGCTATTTCGGGATCTTATGAATGAGGGAATTTTTGATGTCATTGCTGATGTATTACAAAGTCCGGATAAAAAGACAGATATCCTTATTCTTTTCTTGAACCAAGATCCAAATCTTCTGCGTTCTTATGTTGTTAGGAAGGAAGGAATTCCACTCCTAGGACTGCTGGTTGAAGGCTTGATTACCGATTTTGGTGAGGAGATGCACTGTCAGTTTTTTGAAATCCTTCGATGTTTACTGGATTCCTACACACTATCAGGAGCAGCTCAGAGAGAAACTGTTGTCGAGATATTCTACGAGAATCATTTGAGTCAATTAATTGATGTTATAGCATTGTCATGCCCTCCAGAAGGTCTTTATCCATTAGGCAACAAAGTTGGACACTCTGGTGTATTAAAGAATTGGAGCATAGTAAAGCCTGAAATACTATCCAACATTTGTGAACTGCTTTGCTTTTGTGTTCTGCACCATCCTTACAAAATAAAGTGCAACTTTCTCGTGAATAATGTCATAGATAAAGTGTTGTTACTGACTCAAAGAAGGGAAAAATATTTGGTTGTTGCAGCTGTTCGGTTTGTTCGTACTATTTTATCTCGACACGATGATGATCTGATAAATCATTTTGTCAAAAATAATCTTCTAAAACCAATTATAGATGCCTTCGTTGCTAATGGGAATCGTTACAATCTGCTCAACTCTGCTGTTTTAGATTTATTTGAGTTTATCCGCAAGGAAAATCTGAAATCTTTAGTTAAGTACATAGTTGATTCATTCTGGGATCAATTGGTCCAGTTCGAGTACTTGGCTTCAATTCAGTCTCTAAAAGTAAAATATGAGCAGTGCCTAGACGATTTTGGTACAAGAGGCACAACCACTAATGTGTTAGATCCTAGAAAAAGAATCGAGGAGCGTGCTTTGGAGAAAGAAGAAGAAGATTATTTTAACGAAGAGAGTGATGAGGAGGATACTGCAACTGCATCTGTTTCAAATGTACAGAAAGCACAATCTTCACCTGTTCTACGTAATGGAGTTGCTGCAAGTTACCCTCCACCAAGTCCTCGACCTGGTGGTGGACTTGTTGACTATGATGATGATGAGGATGATGAAGACTACAGGCCACCGCCAAGAAAACAATCAGAAACTGTGGAAGAAGATGAAGGAGCATTGCATACCCTCAGGTTGAAGCGGAAGCCTCTTCACAAGGACAAGGAGTCCGAGAAGGTGAAAAAGCAGCGACTGGGAAAAAACTCCAAGACAAAAGATGGTGTATTTGCTGCGTTGTGTTCGACATTGAGCCAAGCAGTTCTGCCCAATAAGAATGCAGTGAGCTCTCAGCACTCTAGGCCCCATCCACTTGATGGGAACAAAAGTTCAGAACACGAGAGTCCGAAAGAGATGGATGAGAATGCTTTAAAAAGCTCAACTGATGATGGCAGTAGCAGTTTGGACGAGGAGAACCATACAGAAAAGCAACCAATTTCTTCTAAGAAGTGTTCTGATCCATTGCTTAAACCTTCAGATAATAGACAGTTGAATGGAGAAGACTGTTCATTGATTCCTCCAAACTCCTCTCCCGAAATGACTCAATCAAATCGAGTGCACTGCAGATTTTGGAGTTCAATCTCTGATTCCATACAAGATTTCGAAGAAGAAATGGGCAGTAGAAGCCTTGAGAATCGTTCATTGGTTGATGAAATCCGATGCTCCCATGGCGGAAGCTTCTTCTACGACCTTGGCCATCCTCTTCTCAATCGTATTGCTGATAGCTTCGTCAAGGCCGCTGGGATAGGTGCATTGCAATCTGTGTCTCGTGAGGCTTATTTTACGGTTGCAGGAAGTGTTGATTCGAACAGTATAGCACCGCCTGAATTATCGAGTATTAGAAAGCAACGTTTTCCAGGTCTTAAAGGTGAAACCAACAGAGAGTCTCTTGAAGCCATGGTGAAGAGAGTGGGATTAGAATCCATCGAATGGGGAGTGGCTGCTGGTGTTTACTCTGGTCTCACGTACGGTTTAAAGGAGGCTCGTGGAGCACATGACTGGAAGAATAGCGCAATTGCGGGTGCTGTGACCGGGGTAGCTGTGGCGCTTATATCAGATGATTCTTCCCATGAGCATATCGTACAATACGCCATCACCGGTGCTGCTGTGTCGACGGCTGCAAATATTTTTGCTGGCATATTTTAG 3219 41.04 MGAPDRSPATSNSMQRVKVYRLNDDGKWDDQGTGHVTVDYLERSEELGLCVVDEEDNETLLLHRISSDDIYRKQEDTIISWRDPEYSTELALSFQETTGCSYIWDHICNAQRNLHFNSLNNDTFHSMNSELRELPAIELSTLPLILKIVVESGITDQMRLVELIVANQDFFKKLMDIFHICEDLENLDGLHMIYKIVRGIILLNSSQIFEKIFGDELIMDIIGSLEYDPELSHVQHHRNFLKEHVIFKEAIPIKDPLVLSKIHQTYRIGYLKDVVLARVLDESTIANLNSIIHANNALDDNTFIQELFVRLKLPTTSEESKKNLVHFLHEFCSLSKNLQMVQQLRLFRDLMNEGIFDVIADVLQSPDKKTDILILFLNQDPNLLRSYVVRKEGIPLLGLLVEGLITDFGEEMHCQFFEILRCLLDSYTLSGAAQRETVVEIFYENHLSQLIDVIALSCPPEGLYPLGNKVGHSGVLKNWSIVKPEILSNICELLCFCVLHHPYKIKCNFLVNNVIDKVLLLTQRREKYLVVAAVRFVRTILSRHDDDLINHFVKNNLLKPIIDAFVANGNRYNLLNSAVLDLFEFIRKENLKSLVKYIVDSFWDQLVQFEYLASIQSLKVKYEQCLDDFGTRGTTTNVLDPRKRIEERALEKEEEDYFNEESDEEDTATASVSNVQKAQSSPVLRNGVAASYPPPSPRPGGGLVDYDDDEDDEDYRPPPRKQSETVEEDEGALHTLRLKRKPLHKDKESEKVKKQRLGKNSKTKDGVFAALCSTLSQAVLPNKNAVSSQHSRPHPLDGNKSSEHESPKEMDENALKSSTDDGSSSLDEENHTEKQPISSKKCSDPLLKPSDNRQLNGEDCSLIPPNSSPEMTQSNRVHCRFWSSISDSIQDFEEEMGSRSLENRSLVDEIRCSHGGSFFYDLGHPLLNRIADSFVKAAGIGALQSVSREAYFTVAGSVDSNSIAPPELSSIRKQRFPGLKGETNRESLEAMVKRVGLESIEWGVAAGVYSGLTYGLKEARGAHDWKNSAIAGAVTGVAVALISDDSSHEHIVQYAITGAAVSTAANIFAGIF 1072
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5289046 5308404 - ClCG06G004650.2 Cla06g00434 274626

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00434 1072 SUPERFAMILY ARM repeat 185 617 IPR016024 -
Cla06g00434 1072 PANTHER ATP SYNTHASE GAMMA-RELATED 1 814 - -
Cla06g00434 1072 MobiDBLite consensus disorder prediction 653 667 - -
Cla06g00434 1072 MobiDBLite consensus disorder prediction 783 873 - -
Cla06g00434 1072 Pfam Phosphatase 4 regulatory subunit 3 167 350 IPR006887 -
Cla06g00434 1072 MobiDBLite consensus disorder prediction 714 761 - -
Cla06g00434 1072 PANTHER BINDING PROTEIN-RELATED 1 814 - -
Cla06g00434 1072 MobiDBLite consensus disorder prediction 796 838 - -
Cla06g00434 1072 MobiDBLite consensus disorder prediction 668 686 - -
Cla06g00434 1072 Pfam Tim17/Tim22/Tim23/Pmp24 family 927 1062 - -
Cla06g00434 1072 SUPERFAMILY PH domain-like 15 111 - -
Cla06g00434 1072 Gene3D - 10 130 IPR011993 -
Cla06g00434 1072 MobiDBLite consensus disorder prediction 854 873 - -
Cla06g00434 1072 MobiDBLite consensus disorder prediction 652 765 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00434 K17491 SMEK, PPP4R3; protein phosphatase 4 regulatory subunit 3 - csv:101215140 1528.46
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla05g00694 Cla06g00434 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00147 Cla-Chr3:1514868 Cla06g00434 Cla-Chr6:5289046 3.18E-10 transposed
Cla05g00694 Cla-Chr5:6444644 Cla06g00434 Cla-Chr6:5289046 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g88 Blo01g00051 . . Bda08g00314 . Bpe14g01103 . Bma05g01015 Cmo08g01239 Cmo17g00353 Cma06g01556 Cma14g01597 Car06g01321 Car14g01409 . Cpe08g00157 Cpe03g01335 Bhi01g01080 . . Lac11g0927 . . Lcy11g1349 Cla06g00434 Cam06g0461 Cec06g0467 Cco06g0466 Clacu06g0448 Cmu06g0449 Cre06g1225 . . Cone7ag0106 Cone4ag0109 Lsi05g01584 Csa06g01744 Chy11g01562 Cme06g00778 Blo02g00481 . . Bda13g00212 Bpe05g00814 . Bma02g00925 . . Cmo06g01555 Cmo14g01627 Cma08g01270 Cma17g00363 Car08g01140 Car17g00336 Cpe12g00315 Cpe17g00061 Bhi12g01920 . . . . . Lcy12g0798 Cla05g00694 Cam05g0761 Cec05g0769 Cco05g0765 Clacu05g0752 Cmu05g0717 Cre05g0792 Lsi09g01483 Csa03g01510 Chy06g00746 Cme11g02073
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001634 1 6 2 2 2 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 1 2 2 2 2 2 4 2 1 71
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g00434 Cla_Chr06 FPKM 13.785864 12.833041 13.556551 12.635512 8.413093 9.881749 9.009581 17.681747 18.430885 16.934181