Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00439 ATGTCTCTCCCCATGAGAGCTGACGTTCAAGGAAGCCTTGTTGGCTCGGAGATTCATGGCTTCCATACATTGCAAGATTTGGATGTTAAAAACATCAGGGAGGAAGCAAGTTCAAGATGGCTTCGCCCAAACGAAATCCATGCAATACTGTGTAACTACAAATATTTCACCATTCACGTCAAGCCAGTGAACTTGCCCAAAAGTGGAACCATTGTATTATTTGACCGCAAGATGCTTAGGAATTTTCGGAAAGATGGACATAATTGGAAGAAAAAAAAGGATGGAAAGACAGTAAAAGAAGCACATGAACACCTAAAAGTTGGAAATGTAGAAAGGATACATGTATACTATGCCCATGGCCTAGATAACCCAACCTTTGTTCGTCGGTGTTATTGGCTCCTTGATAAGACTCTTGAACACATTGTCCTCGTTCATTACCGTGAAACACAAGAGAGTTCTCCATCCACATCGATGAATTCAAATTCTGGTTCTGTCTCTAACCCATCAACTCCTTGGCTTTTATCGGAAGAACTTGATTCCAGAGCTACTCATGTTTATTCTGTTGGTGAAAATGAATTGCCAGAGCCTAGTGACACTACAACAGTCATGACTCATGAACAGCGGCTTCATGAGATCAACACACTTGAGTGGGATGATCTTCTTGTGACGGATGAGCCTTTCAAACCTGCCATGCCTAAAGGAGGCAAACTTTCTTGCTTTGACCAACAGAACCAAGTCCCAATAAATGCAACCGACAATTTATTGGGGGAGATGTCTTCATTTAATAATCCAGTTGAGCCAACTGGGAGGGTCAACGGCAATATCAGTTTCACAGGAAGCGCCAATCTGTCGTTGGGTGGTCAAACAAATTTGAATGTAGAGAAGAGTGAATCCATTCCAGTTAACTCTTTGGACAGTTTGTTAAATGAGGGATTGCAAAGTCAGGACAGCTTTGGACGGTGGATAAATGAAGTCATCACGGATTCTTCAGGTTCAGTGATTGATCCTGCTATTGAGCCATCCATTTCGTCTGTTGATTCTGTTCACAATTCCTATTGTGATTCAACATTATATCACCATCAAACTTCGGCCATGGAGCAAATCTTTAACATAACTGATGTCTCACCTGCATGGGCCTTTTCAACAGAAAAAACAAAGATTCTAATTATTGGATATTTTCACAATGACTACGTACATCTTGCAAAGTCCAGTATATTGGTTGTATGCGGTGATACTAGTGTTAATGTTGATTTTGTTCAACCTGGAGTTTTTCGCTGTCTGGTACCACCACATTCACCGGGACTAGTACATTTATATGTGAGCTTAGATGGCCACAAACCTATTAGTCAAGCTCTGAATTTTGAGTATCGTGCACCAAATTTACAAGTGCCTGTAGTTGCTTCAGAACAGATCCAAAAGTGGGAGGAGTTTCAGGTTCAGATGCGGCTTGCTCATCTGTTGTTCTCTACATCCAGGATCCTGAGCATCATGTCAACTAAATTGTCGCCCATTGCCCTACTCGAGGCCAAGAAACTTGCTGTCAAAACTTCTGACATTTCTGATAGTTGGATTTATTTGTTAAAGTCAATTACAGAAAATAGAACTCCATTTCAACAAGCAAGGGAAGGTGTTCTTGAGATCATATTGAGAGCCCGGTTGAGGGAATGGCTGATAGAAAAAGTTGCTGAAGGCTCAAAGAAAAGCACTGAGTTTGATGTAAATGGTCAAGGAGTAATCCATTTGTGTGCCATATTGGGATATACATGGGCCGTACATCCATTTGTATGGTCTGGTTTATCAATAAACTTCCGAGATAAATCTGGATGGACAGCTCTTCACTGGGCAGCTTATTATGGAAGGGAGAAAATGGTCGCTGTTCTTTTATCAGTGGGGGCAAGGCCAAACGTGGTCACTGATCCCACTGCAAAGAACCCTGAGGGATGTACAGCTGCAGATCTTGCATCTATGAATGGTTACGATGGCTTAGCTGCGTATCTTTCTGAAAAGGCTCTGGTATCACACTTTGAAGAGATGAGCTTGGCTGGAAATGTTAGTGGCTCATTGGATACTAGTAGTACAATAACTGATGCCTCTGATTGCATCAGTGAGGAGCAGATGTATATGAAAGAAACATTAGCAGCTTACCGAACGGCAGCTGATGCAGCAGCACGCATACAAGCTGCATTCCGTGAACATTCTTTAAAGCAAAGAACTAATGCAATTGAATTCTCCACACCTGAAGCTGAAGCACGCGGTATTATCGCAGCCATGAAAATTCAACATGCCTTCCGCAATTTTGAGACACGGAAAAAAATGGCAGCTGCGGCTCGTATCCAATACAGATTCCGCACTTGGAAGATCCGCAAAGACTTCCTTAATATGCGTCGTCAAACTATTAGAATTCAAGCTGCATTTAGAGGCTTCCAAGTGCGGAGGCAGTATCGCAAGATTGTTTGGTCGGTAGGAGTACTCGAGAAAGCTATACTGCGCTGGCGTCTTAAGAGAAAAGGTTTTCGTGGGCTGCAAGTTGCACCTGCTGAAGAGTTAACAAAGCTGGAAGTTGGCATAGAAGAGGACTTCTACCGTGTATCTCAAAAACAAGCAGAAGAGCGAGTTGAGAGAGCTGTTATTCGGGTTCAGGCTATGTTTCGATCAAAGAAAGCACAGGAAGAGTATCGTAGGATGAGATTAACCTATGATGAAGCAGCGTTGGAATATGAAGAACTTTCACATCCTGATATAAATTGA 2748 42.32 MSLPMRADVQGSLVGSEIHGFHTLQDLDVKNIREEASSRWLRPNEIHAILCNYKYFTIHVKPVNLPKSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNVERIHVYYAHGLDNPTFVRRCYWLLDKTLEHIVLVHYRETQESSPSTSMNSNSGSVSNPSTPWLLSEELDSRATHVYSVGENELPEPSDTTTVMTHEQRLHEINTLEWDDLLVTDEPFKPAMPKGGKLSCFDQQNQVPINATDNLLGEMSSFNNPVEPTGRVNGNISFTGSANLSLGGQTNLNVEKSESIPVNSLDSLLNEGLQSQDSFGRWINEVITDSSGSVIDPAIEPSISSVDSVHNSYCDSTLYHHQTSAMEQIFNITDVSPAWAFSTEKTKILIIGYFHNDYVHLAKSSILVVCGDTSVNVDFVQPGVFRCLVPPHSPGLVHLYVSLDGHKPISQALNFEYRAPNLQVPVVASEQIQKWEEFQVQMRLAHLLFSTSRILSIMSTKLSPIALLEAKKLAVKTSDISDSWIYLLKSITENRTPFQQAREGVLEIILRARLREWLIEKVAEGSKKSTEFDVNGQGVIHLCAILGYTWAVHPFVWSGLSINFRDKSGWTALHWAAYYGREKMVAVLLSVGARPNVVTDPTAKNPEGCTAADLASMNGYDGLAAYLSEKALVSHFEEMSLAGNVSGSLDTSSTITDASDCISEEQMYMKETLAAYRTAADAAARIQAAFREHSLKQRTNAIEFSTPEAEARGIIAAMKIQHAFRNFETRKKMAAAARIQYRFRTWKIRKDFLNMRRQTIRIQAAFRGFQVRRQYRKIVWSVGVLEKAILRWRLKRKGFRGLQVAPAEELTKLEVGIEEDFYRVSQKQAEERVERAVIRVQAMFRSKKAQEEYRRMRLTYDEAALEYEELSHPDIN 915
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5330687 5341197 - ClCG06G004700.1 Cla06g00439 274631

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00439 915 ProSiteProfiles Ankyrin repeat profile. 607 639 IPR002110 GO:0005515
Cla06g00439 915 SMART ANK_2a 607 636 IPR002110 GO:0005515
Cla06g00439 915 SMART ANK_2a 646 675 IPR002110 GO:0005515
Cla06g00439 915 SUPERFAMILY Ankyrin repeat 569 669 IPR036770 -
Cla06g00439 915 Gene3D - 772 818 - -
Cla06g00439 915 Pfam IPT/TIG domain 371 456 IPR002909 -
Cla06g00439 915 Pfam CG-1 domain 35 148 IPR005559 GO:0003677
Cla06g00439 915 ProSiteProfiles IQ motif profile. 771 798 IPR000048 GO:0005515
Cla06g00439 915 ProSiteProfiles IQ motif profile. 794 818 IPR000048 GO:0005515
Cla06g00439 915 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 715 821 IPR027417 -
Cla06g00439 915 Coils Coil 885 905 - -
Cla06g00439 915 SUPERFAMILY E set domains 370 457 IPR014756 -
Cla06g00439 915 ProSiteProfiles IQ motif profile. 873 901 IPR000048 GO:0005515
Cla06g00439 915 Gene3D Immunoglobulins 364 460 IPR013783 -
Cla06g00439 915 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 20 912 - -
Cla06g00439 915 ProSiteProfiles IQ motif profile. 718 747 IPR000048 GO:0005515
Cla06g00439 915 Gene3D - 506 670 IPR036770 -
Cla06g00439 915 Pfam Ankyrin repeats (3 copies) 556 636 IPR002110 GO:0005515
Cla06g00439 915 SMART iq_5 871 893 IPR000048 GO:0005515
Cla06g00439 915 SMART iq_5 770 792 IPR000048 GO:0005515
Cla06g00439 915 SMART iq_5 793 815 IPR000048 GO:0005515
Cla06g00439 915 SMART iq_5 717 739 IPR000048 GO:0005515
Cla06g00439 915 MobiDBLite consensus disorder prediction 149 169 - -
Cla06g00439 915 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 6 20 912 - -
Cla06g00439 915 SMART CG_1_2 32 150 IPR005559 GO:0003677
Cla06g00439 915 ProSiteProfiles CG-1 DNA-binding domain profile. 29 155 IPR005559 GO:0003677
Cla06g00439 915 CDD IPT 371 457 - -
Cla06g00439 915 Pfam IQ calmodulin-binding motif 796 815 IPR000048 GO:0005515
Cla06g00439 915 ProSiteProfiles Ankyrin repeat region circular profile. 607 636 - -
Cla06g00439 915 ProSiteProfiles IQ motif profile. 755 781 IPR000048 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00439 K21596 CAMTA; calmodulin-binding transcription activator - csv:101211298 1611.66
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g00439 Cla-Chr6:5330687 Cla10g00851 Cla-Chr10:19518958 1.56E-39 dispersed
Cla06g00439 Cla-Chr6:5330687 Cla04g00738 Cla-Chr4:22399352 6.05E-139 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g92 Blo01g00054 . Bda03g01166 Bda08g00378 Bpe04g01108 . Bma04g01136 Bma05g01017 Cmo08g01236 Cmo17g00349 . . . . . . . . . . . . . . Cla06g00439 Cam06g0464 Cec06g0470 Cco06g0469 Clacu06g0451 Cmu06g0452 Cre06g1228 Cone14ag0727 . . . . Csa06g01752 Chy11g01557 . . . . . Bpe05g00817 . . . . . . Cma08g01266 Cma17g00358 Car08g01136 Car17g00331 Cpe12g00311 Cpe17g00057 Bhi12g01914 Tan06g2741 . Lac11g0922 . . Lcy12g0790 . . . . . . . Lsi09g01478 . . Cme11g02068
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla09g01515 . 10 1087 CAMTA Transcription Factor Family AT5G64220 50.8 2.8e-270 928.7
Cla06g00202 . 6 942 CAMTA Transcription Factor Family AT1G67310 52.0 2.1e-254 875.9
Cla06g00439 . 34 906 CAMTA Transcription Factor Family AT3G16940 55.1 5.1e-259 891.0
Cla06g00439 . 11 631 CAMTA Transcription Factor Family AT4G16150 53.8 1.2e-192 670.6
Cla09g01515 . 10 1087 CAMTA Transcription Factor Family AT5G64220 50.8 2.8e-270 928.7
Cla06g00202 . 6 942 CAMTA Transcription Factor Family AT1G67310 52.0 2.1e-254 875.9
Cla06g00439 . 11 631 CAMTA Transcription Factor Family AT4G16150 53.8 1.2e-192 670.6
Cla06g00439 . 34 906 CAMTA Transcription Factor Family AT3G16940 55.1 5.1e-259 891.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005047 3 2 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 3 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61244 PF03859 CG-1 1.60E-45 No_clan Cla TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g00439 Cla_Chr06 FPKM 84.180016 90.849907 110.556633 106.908302 164.650833 163.274033 160.386887 160.598053 161.796371 150.402771