Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00443 ATGGGAGTTGAGAAAGAAAGTTTGAGAAGTGGAGGAAGTTATGTTGGAGGATTCTTTCAGTTGTTTGATTGGACTGCCAAATCTCGAAAGAGATTGTTCTCTAGCAAACCGGACGTACAAGAGCGTTTCAGACAAGGGAATAGAAGTGCTGGAAACTCTCCATTGACACAGGTTCATCTGATAGATTTGGATGAATGTGGAGGAAGGCAAAGTATTAAAGGAAGCAGTGATTACAGTTGTTCTTCATCTGTGACGGAAGATGAAGGATGTGGAGTTAAGGTCCCTGGGGTAGTTGCTAGGCTTATGGGATTAGACTCATTACCGTCATCTCATTTTTCAGACTCCTACTTTACCCCATCATTTGATACTCAATCTCTTCAAGAAGCTCACAGTCATAGGGGAAGTTTCAATTATCGTCATGACTGCCAAATCATGTTCTCTGGTAATTTGCTTGATCAAGTTGATGATCGAGCACCTGCCCCTGCCAGGAAACCTTCAGAACCAAAACCTCAGAAGACTGTAAGCAGACCAATAGAGAAGTTCCAAACAGAAATCCTCCCTCCTAAATCAGCAAAATCAATTCCAATTACTCACCATAAGCTTTTGTCCCCTATTAAGAGTCCTGCTTTCATACCGAGTAAGAATGCTGCTCACATAATGGAAGCTGCTGCAAAAATAATAGAACCTGGACCTTCAGCAACTACCAAGAGTAGGATGTCACTGATTGGATCTTCTTCAGCACCCTTGAAATTTCAAGCTCCAAAAGAAAAGATAGATATACCACAAAAACTGCCTCCAGTTAGGTCCTCTTCAGTGAGCTTGAAGGTCAAAGAATCAAAAGAGAAAGCAGAAGCCTCTCATAAGTCGACCAGGTTCCTTGAAGCTTCTAGAAAGCCTATTGAATCAAATGCTTCCAGACTTTTGAAGGGACAGTCTATGAACAAAAGCTGGGATGGATCTCAAGATGCATCATCATTCAAGGCTTTACCTGATGTGGAATATGGTTCTAAGAACAAAGGAAAATCCATATCACTTGCAATACAAGCAAAAGTTAATGTACAAAGAAGAGAAAATGTGAATACCGAGAGCCATAGAAATTTTACTGGTCAGAAACAACAGACTGAGTTCAAGTCAAGCCAGCCTTTTAAGTTGCCGGCGAGCTCTAAGAAAAATCTGCATGTGCAATCCTCTGTTTGCAATGCTTCTTCTTCTAACCAGCCACTCAAGCAGAACAACCAGAAACAGAACTGCCATGTTGACAGGGTAAAATTAGCATCAAAGAACTCGATTGCCAACTCTGAGGGCAAGAAACCGCTAACTGGAGATTCATCTTTTGGACATCGAAGAAATGTAGGAAGAGTAGTCGCTGGCTCAAAAGCTGGTGCTAGGAAGTCAAGCTTAGACATATCTGACAGGGAAAAGGAAGACTCGCATTCTAATGCAAAAAATCTTCGTAGGAAGAAACGGTCTATAGATAGGGATCAACGCTTTGACAAAAAACAGGCGACGGATAATATGTTAACTGACAAAATCCAGATGCCAGTTCATTCCAGTAATATCGTTGACAGATCTTCTAGTACTTTGGCTCAAGAATGCAGAAAAAAGGGCACAGATGTTGTTTCTTTTACCTTTACTGCACCACTTACAAGGAAGGTGCCTGGATCTGACACCTCTGGGCACATTGAATCAAAATTTAGAGAGACGCTTGGACCAGATAGCTTGAAGTCGTCCTCAATAGAGTGCAATGTTATTGGAGAAAATGCTTTGAGTGCACTTTTAGAGCAGAAGCTAAGAGAATTAATTGAAAAGGTCGAGTCCCCTAGCCTCGGATCGCTCGTTGGAGGGTCGGAGAGTTCTTGTATATCGAATTATGATCATCCTTCACCCTCTCTTGATACATTCGACACAATGTCGTCAGAGCTGAATGATAAGAACCAGCACGATTCTGTTCGCAGCAAGCTGGTTGGCCAATACAATTTTGATTGCTCTTCAACTGATTCTTCATCACAAGGATTAAAACTTGAATTCCCGTTAGTACATGGGATTGAAGAGTGTAGCAGTAATAGTAATGACCCTGGTGCTGGGCAGTCGCTAAAAGTTCGACATCCCAGTCCCGTCTCCATTCTTGAACATTCCTTTTCTTCAGAAAGCTGCGACTCATCAGATAGTAACAGCAGAGAAGGAAACAGGCTTTGCTCTTCAGTCCAAGGCCAAGATGTTATTGGCATAGGTTTCTCCAAGTTCGATCCAGTGGAAGTTGATTCAGAGTTGCTAGATTCTGCAACCTCCATAACCGACGAAGCTCCAACTTTAACTAGTTCATCTATCTCGAGAGGTACGAAAGGACACATTGAATGGGAACTAGAATACATAGAGGATATACTCTGCGATGTGGAGTTGATGTTTAAGGACTACATATTGGGGCGTTCTCATGAAGTTATAAATCCTTATCTATTCAATATATTAGAGAATCAAAACAAAGGATCGGAACGAAGCCGTGGTGAATCCCGGCATAGACGAAAGGCGTTATTCGATTGCGTTTGCGAATGTTTGGACTTGAGATGTAGACAATATGTGGGTGGAGGGTATAAAATGTGGGAGAAAGGAGTGGGAGTTTTGAAAAGAACAAAACTGTTAGCCAAAGAGATTTATAAGGAGGTTTCGGATTATAGAGGAATGGGGGATTGTATGGTGGACGAACTGGTCGATAAGGATATGAGTTGCTGGTATGGAAGATGGATGGACTTTGAGGTCGATGCTTTTACAATCGGAATCGAAGTCGAGACTCAAATTCTGGATTCTTTAGTTGAAGAAGTGCTTGCTGATATTGTGATTCCTTGA 2841 41.82 MGVEKESLRSGGSYVGGFFQLFDWTAKSRKRLFSSKPDVQERFRQGNRSAGNSPLTQVHLIDLDECGGRQSIKGSSDYSCSSSVTEDEGCGVKVPGVVARLMGLDSLPSSHFSDSYFTPSFDTQSLQEAHSHRGSFNYRHDCQIMFSGNLLDQVDDRAPAPARKPSEPKPQKTVSRPIEKFQTEILPPKSAKSIPITHHKLLSPIKSPAFIPSKNAAHIMEAAAKIIEPGPSATTKSRMSLIGSSSAPLKFQAPKEKIDIPQKLPPVRSSSVSLKVKESKEKAEASHKSTRFLEASRKPIESNASRLLKGQSMNKSWDGSQDASSFKALPDVEYGSKNKGKSISLAIQAKVNVQRRENVNTESHRNFTGQKQQTEFKSSQPFKLPASSKKNLHVQSSVCNASSSNQPLKQNNQKQNCHVDRVKLASKNSIANSEGKKPLTGDSSFGHRRNVGRVVAGSKAGARKSSLDISDREKEDSHSNAKNLRRKKRSIDRDQRFDKKQATDNMLTDKIQMPVHSSNIVDRSSSTLAQECRKKGTDVVSFTFTAPLTRKVPGSDTSGHIESKFRETLGPDSLKSSSIECNVIGENALSALLEQKLRELIEKVESPSLGSLVGGSESSCISNYDHPSPSLDTFDTMSSELNDKNQHDSVRSKLVGQYNFDCSSTDSSSQGLKLEFPLVHGIEECSSNSNDPGAGQSLKVRHPSPVSILEHSFSSESCDSSDSNSREGNRLCSSVQGQDVIGIGFSKFDPVEVDSELLDSATSITDEAPTLTSSSISRGTKGHIEWELEYIEDILCDVELMFKDYILGRSHEVINPYLFNILENQNKGSERSRGESRHRRKALFDCVCECLDLRCRQYVGGGYKMWEKGVGVLKRTKLLAKEIYKEVSDYRGMGDCMVDELVDKDMSCWYGRWMDFEVDAFTIGIEVETQILDSLVEEVLADIVIP 946
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5410502 5415147 - ClCG06G004760.1 Cla06g00443 274635

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00443 946 MobiDBLite consensus disorder prediction 465 505 - -
Cla06g00443 946 MobiDBLite consensus disorder prediction 157 174 - -
Cla06g00443 946 PANTHER PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT P DOWN SYNDROME CRITICAL REGION PROTEIN 5 -RELATED 1 263 - -
Cla06g00443 946 PANTHER PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT P DOWN SYNDROME CRITICAL REGION PROTEIN 5 -RELATED 262 944 - -
Cla06g00443 946 MobiDBLite consensus disorder prediction 356 511 - -
Cla06g00443 946 MobiDBLite consensus disorder prediction 363 419 - -
Cla06g00443 946 MobiDBLite consensus disorder prediction 305 323 - -
Cla06g00443 946 MobiDBLite consensus disorder prediction 155 176 - -
Cla06g00443 946 MobiDBLite consensus disorder prediction 263 291 - -
Cla06g00443 946 PANTHER EXPRESSED PROTEIN 1 263 - -
Cla06g00443 946 PANTHER EXPRESSED PROTEIN 262 944 - -
Cla06g00443 946 MobiDBLite consensus disorder prediction 303 323 - -
Cla06g00443 946 MobiDBLite consensus disorder prediction 274 291 - -
Cla06g00443 946 Pfam DUF761-associated sequence motif 82 113 IPR032795 -
Cla06g00443 946 Pfam Domain of unknown function (DUF4378) 787 938 IPR025486 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00443 - - - csv:101212589 1577.76
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g01147 Cla-Chr4:26696954 Cla06g00443 Cla-Chr6:5410502 3.01E-06 dispersed
Cla05g01298 Cla-Chr5:15659823 Cla06g00443 Cla-Chr6:5410502 7.65E-09 dispersed
Cla06g00443 Cla-Chr6:5410502 Cla06g01534 Cla-Chr6:28920894 1.07E-06 dispersed
Cla02g01492 Cla-Chr2:29436987 Cla06g00443 Cla-Chr6:5410502 6.92E-122 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g105 Blo01g00057 . Bda03g01163 Bda08g00308 Bpe04g01107 . Bma04g01138 Bma05g01020 Cmo08g01229 Cmo17g00345 . . . . . . . . . . . . . . Cla06g00443 Cam06g0471 Cec06g0476 Cco06g0474 Clacu06g0457 Cmu06g0458 Cre06g1233 . . Cone7ag0113 Cone4ag0117 . Csa06g01760 Chy11g01551 . . . . . Bpe05g00820 . . . . . . Cma08g01259 Cma17g00355 Car08g01130 Car17g00327 Cpe12g00305 Cpe17g00051 Bhi12g01905 . . . . . . . . . . . . . Lsi09g01471 . . Cme11g02061
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004358 3 4 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g00443 Cla_Chr06 FPKM 10.533877 12.078013 9.965016 9.764328 18.103825 18.775894 17.564091 10.131878 9.059808 8.846154