Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00448 ATGGCCGCTGAGGGAAGCACAGAGACAGACAACCTTCTCACACTTCTCAACCCTCCTTCTTGGGTTCTTCTCCTCACAGGGATTCCATTTGGAGCACCGGATAAAGTGGACTGCAGTGGAAGAAAAGCAGAAAACAGTTCAACTATTGGAGGAAAGAGCCAGTTGGTTGGTCCTGCACTCTTCAAGGAACGAGCCACTTTTATGACTAAAATACTCGTAAATAACTCTCTTACGCCTTGTGGAATGGATCTGAGCCACATGAAAGGATCGATGCCGATGCCGATGCCGACGCCGACTTCAATTTCTGCTAGAAAATCCACAGATATGGTTTCTGATCAGTTCCCGGCCGGTCTTCGCGTCCTGGTTGTTGACGACGATCCTACCTGTCTCAGGATCTTGGAAAAGATGCTTCAGAATTGCTGCTATGCCGTGACGAAATGCAACCGGGCGGAGATTGCGTTATCCATGCTTCGTGAGAACAAAAATGGTTATGATATTGTTTTAAGCGATGTGCATATGCCTGACATGGATGGATTCAAGCTTCTAGAGCAAGTTGGGCTGGAGATGGATTTGCCTGTTATCATGATGTCAGCTGATGATGGGAAGAATGTTGTGATGAAGGGAGTGATTCATGGTGCTTGTGATTACCTGATCAAACCCGTTCGGATAGAAGCACTCAGGAACATATGGCAACATGTAGTTCGAAAGAGAAAGACTGAATGGAAGGATTTAGAGCAATCCGGTAGCGTGGACGATGGAGATCGAGAGCAAAATCTGTCTGAAGGTGCAAATTATTCGTCTTCGGCATACGAAGGAAGTTGGAACAGCTCGAAGAGGAGGAGGGATGCTGAAGAAGAGCCCGAGGAGAGGGACGATACATCGACGTTAAAGAAGCCGAGGGTGGTATGGTCAGTTGAGCTCCATCAACAGTTTGTCGCTGCAGTTAATCAGCTAGGCATTGACAAGGCTGTCCCTAAGAAGATATTGGAGTTGATGAATGTTCCGGGGCTTACTAGAGAAAATGTTGCCAGTCATCTTCAGAAATATCGCTTATATCTTAGAAGGCTTAGTGGAGTATCACCACATCAAAGTAATTTGAACAATTCTTTTATCAACCCCCAAGACCCACCTTATGGGTCAATGGCCTCATTCAATGGGATTGATCTTCAAACGCTTTCGGTCACCGGCCAACTCTCGCCACAAAGTCTTGCTGCCCTCCAAGCAACGGGACTTCATAGGCCAACCGCAAAATCTAGCATATCCATGGCTCTTGTTGATCAGAACAACATATTCAGTTTTGAAAACCCAAAATTGAGGTTTGTTGAGGACCAAACACAGCACCTAAATAACAGTAAACCAGTAAATTTGTTTCATGGGATTCCAACAAAAATGGAGCCAAAGCAGCTTGCCAATATGCAGCATCCTTCTGTGCAGTCTCAGGGGAACATAAATATGCAACTCAATATCAAGAGCGAACATGGTGGAACTCAATTAATGCATTTGTCTCAACACCAAACTGTGGGACAGACTCTAAGTAACTCTCCTGCTAGCCACTTGAGGAAGCCGATCGTATCAGGTAACGTTACGAGGGGAAATGGGACTGCTGATAATAGCCACAGATCTGGATACAACCTAGTTTCGCCAACATCGGTGATGGTGAACTATCCAATGAGCCAAACCACGGAATTGTCCAACAATTTTTCTCTTCAGAGTAATTCATCGGTATCTACCTTGACTTGTAAAGGGGTATTTCAAGAAGAGATTAGTTCAGATCTAAAAGTATCGGGCGGACTAATGTTGAGTTATGATGTTTTTAGTGACTTGCATCTGCAGAAATCCCATGACTGGGATTCTCAAAACGTAAGCACCTTGGCCTTTGGTAATTCTCACCATGGGAACTTCATACAGGATAGCTTTGATATCCCACCCTCCACTTTAATTCATCATGGTTTTCCTTCAAGCCAAACAAATGGACAAAACCAAAATTCGTCAGTCATTGGAAAGACTATCTTTTCCTTTGCGGATTCAACTCAACCCGAAAATCCACAAAGTATCGCCCAAAACTCGCTTCTCGATCCCGTGGAGGTCAAAACTCAGAGAATCCCAGATGCAAGCTATCAAACTGACCTCTTATCTGAGGACTTTGGCCAGGATGAACTTCTTGGCGTCTTTCTCAAACAACAGCAACAAGGAGACAACGGATCGGTCGGATTAGATGACAGAGATTTCAATGCAAGTCTAAAGCAATCTTCCTCAGAATGCTCACACAGAAGATGCAAATCTTACTCCAACTTCGATTGGCGTTCAAAGCCTGAAGCGATTTATTTTAGGATGCGTGTGAAACTGTTTGTTTGTAACGGGCACATCGCTGGATTGTCGGCTCGGCTCCATTGTATTTGGAACCAGTTAGGAGATTTCTCATCTCTCTAA 2430 44.61 MAAEGSTETDNLLTLLNPPSWVLLLTGIPFGAPDKVDCSGRKAENSSTIGGKSQLVGPALFKERATFMTKILVNNSLTPCGMDLSHMKGSMPMPMPTPTSISARKSTDMVSDQFPAGLRVLVVDDDPTCLRILEKMLQNCCYAVTKCNRAEIALSMLRENKNGYDIVLSDVHMPDMDGFKLLEQVGLEMDLPVIMMSADDGKNVVMKGVIHGACDYLIKPVRIEALRNIWQHVVRKRKTEWKDLEQSGSVDDGDREQNLSEGANYSSSAYEGSWNSSKRRRDAEEEPEERDDTSTLKKPRVVWSVELHQQFVAAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSPHQSNLNNSFINPQDPPYGSMASFNGIDLQTLSVTGQLSPQSLAALQATGLHRPTAKSSISMALVDQNNIFSFENPKLRFVEDQTQHLNNSKPVNLFHGIPTKMEPKQLANMQHPSVQSQGNINMQLNIKSEHGGTQLMHLSQHQTVGQTLSNSPASHLRKPIVSGNVTRGNGTADNSHRSGYNLVSPTSVMVNYPMSQTTELSNNFSLQSNSSVSTLTCKGVFQEEISSDLKVSGGLMLSYDVFSDLHLQKSHDWDSQNVSTLAFGNSHHGNFIQDSFDIPPSTLIHHGFPSSQTNGQNQNSSVIGKTIFSFADSTQPENPQSIAQNSLLDPVEVKTQRIPDASYQTDLLSEDFGQDELLGVFLKQQQQGDNGSVGLDDRDFNASLKQSSSECSHRRCKSYSNFDWRSKPEAIYFRMRVKLFVCNGHIAGLSARLHCIWNQLGDFSSL 809
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5465586 5474203 - ClCG06G004810.2 Cla06g00448 274640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00448 809 MobiDBLite consensus disorder prediction 510 543 - -
Cla06g00448 809 Pfam Response regulator receiver domain 120 228 IPR001789 GO:0000160
Cla06g00448 809 Gene3D - 118 252 - -
Cla06g00448 809 MobiDBLite consensus disorder prediction 259 274 - -
Cla06g00448 809 CDD REC_typeB_ARR-like 120 234 - -
Cla06g00448 809 PANTHER TWO-COMPONENT RESPONSE REGULATOR 100 723 IPR045279 GO:0009736
Cla06g00448 809 SUPERFAMILY CheY-like 117 241 IPR011006 -
Cla06g00448 809 SUPERFAMILY Homeodomain-like 295 355 IPR009057 -
Cla06g00448 809 Pfam Myb-like DNA-binding domain 300 350 IPR001005 -
Cla06g00448 809 MobiDBLite consensus disorder prediction 241 258 - -
Cla06g00448 809 SMART REC_2 118 230 IPR001789 GO:0000160
Cla06g00448 809 MobiDBLite consensus disorder prediction 241 295 - -
Cla06g00448 809 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 297 354 IPR017930 -
Cla06g00448 809 MobiDBLite consensus disorder prediction 275 295 - -
Cla06g00448 809 Gene3D - 295 357 - -
Cla06g00448 809 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 298 351 IPR006447 GO:0003677
Cla06g00448 809 MobiDBLite consensus disorder prediction 527 543 - -
Cla06g00448 809 PANTHER TWO-COMPONENT RESPONSE REGULATOR 100 723 - -
Cla06g00448 809 ProSiteProfiles Response regulatory domain profile. 119 234 IPR001789 GO:0000160
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla05g00679 Cla06g00448 CCT
Cla05g00679 Cla06g00448 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01695 Cla-Chr5:28690664 Cla06g00448 Cla-Chr6:5465586 1.46E-109 dispersed
Cla06g00009 Cla-Chr6:130074 Cla06g00448 Cla-Chr6:5465586 2.12E-31 dispersed
Cla06g00064 Cla-Chr6:678846 Cla06g00448 Cla-Chr6:5465586 9.16E-25 dispersed
Cla06g00448 Cla-Chr6:5465586 Cla06g01213 Cla-Chr6:25304932 1.38E-100 dispersed
Cla09g00504 Cla-Chr9:4761023 Cla06g00448 Cla-Chr6:5465586 8.34E-30 dispersed
Cla05g00679 Cla-Chr5:6321293 Cla06g00448 Cla-Chr6:5465586 0 wgd
Cla06g00448 Cla-Chr6:5465586 Cla09g00502 Cla-Chr9:4747717 6.52E-12 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61248 PF00072 Response_reg 8.10E-22 CL0304 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00448 - K14491 csv:101210138 1201.04