Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00451 ATGGGTGTTTACACTTATGAAAACGAAGTGGCCTCTGTGATTCCTCCGGCTAAATTCTTTAAGGCATTCATTCTTGATGCTGACCATCTTTACCCTAAGATTGTGCCAAATCAGCCCCAAAATGAAATTGTCGAAGGAGATGGCGGCCCTGGAACTATCAAAAAGATCACCTTCAATCACGGAGGACAAGTGAAAACTATCGTACACAGGCTGGACGTAGTAGACGAAGCATCATTGACATACAAATACACGGTGTTAGAAGGAGATCTTATTTCAGATACTATAGACCAAATTGTAAAGGAAATAAAAGTAACAGCAGGTCCTGATGGAGGATCTATTTTGAAGAGCACTAGCATTTACCACACTAAAGGAGACAACCAACTCGATGAGGAGAAGCTCAAGATCGCAATAATGGGTGTTTACACTTACGAAAATGAGGTGACCTCTGTGATTCCTCCGGCTAAATTTTTTAAGGCATTCATTCTTGATGCTGACCATCTTTACCCTAAAATTATCCCAAATCAACCTCAAACTGAAATTATTGAAGGAGATGGTGGCTCTGGAACTATCAAGAAGATCACCTTCAATCACGGAGGACAAGTAAAAACTATAGTACACAAGCTGGACGTAGTGGATGAAGCATCGTTGACGTACAAATACACAGTGTTAGAAGGGGATCTTATTTCAGATACTATAGACCAAATTGTAAAGGAAATAAAAGTAACGGCAGGTCCTAACGGAGGATCCATTTTGAAGAGCACTAGTATTTACCATACTAAAGGAGACAACCAACTCGACGAGGTGAAGCTCAAGAGTAGCGAAGAAAAGGGATTGGCACTTTTCAAAGCTGCCGAGAACTACCTCTTGGCCAACCCCAATGAATACAACTAA 891 40.97 MGVYTYENEVASVIPPAKFFKAFILDADHLYPKIVPNQPQNEIVEGDGGPGTIKKITFNHGGQVKTIVHRLDVVDEASLTYKYTVLEGDLISDTIDQIVKEIKVTAGPDGGSILKSTSIYHTKGDNQLDEEKLKIAIMGVYTYENEVTSVIPPAKFFKAFILDADHLYPKIIPNQPQTEIIEGDGGSGTIKKITFNHGGQVKTIVHKLDVVDEASLTYKYTVLEGDLISDTIDQIVKEIKVTAGPNGGSILKSTSIYHTKGDNQLDEVKLKSSEEKGLALFKAAENYLLANPNEYN 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5508456 5516130 - ClCG06G004840.1 Cla06g00451 274643

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00451 296 Gene3D - 2 138 IPR023393 -
Cla06g00451 296 Gene3D - 139 295 IPR023393 -
Cla06g00451 296 SMART Bet_v_1_2 138 291 IPR000916 GO:0006952
Cla06g00451 296 PRINTS Major pollen allergen Bet V1 signature 140 160 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Cla06g00451 296 PRINTS Major pollen allergen Bet V1 signature 280 290 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Cla06g00451 296 PRINTS Major pollen allergen Bet V1 signature 221 234 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Cla06g00451 296 PRINTS Major pollen allergen Bet V1 signature 246 262 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Cla06g00451 296 PRINTS Major pollen allergen Bet V1 signature 163 173 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Cla06g00451 296 PRINTS Major pollen allergen Bet V1 signature 202 221 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Cla06g00451 296 PRINTS Major pollen allergen Bet V1 signature 186 195 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Cla06g00451 296 PANTHER PR-10 TYPE PATHOGENESIS-RELATED PROTEIN-RELATED 1 136 - -
Cla06g00451 296 PANTHER PR-10 TYPE PATHOGENESIS-RELATED PROTEIN-RELATED 138 296 - -
Cla06g00451 296 Pfam Pathogenesis-related protein Bet v 1 family 138 291 IPR000916 GO:0006952
Cla06g00451 296 Pfam Pathogenesis-related protein Bet v 1 family 1 132 IPR000916 GO:0006952
Cla06g00451 296 PANTHER - 138 296 - -
Cla06g00451 296 PANTHER - 1 136 - -
Cla06g00451 296 SUPERFAMILY Bet v1-like 2 136 - -
Cla06g00451 296 CDD Bet_v1-like 142 288 - -
Cla06g00451 296 SUPERFAMILY Bet v1-like 139 294 - -
Cla06g00451 296 CDD Bet_v1-like 5 134 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00451 - - - csv:101214193 274.248
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g00451 Cla-Chr6:5508456 Cla05g02522 Cla-Chr5:36567084 1.97E-07 dispersed
Cla06g00451 Cla-Chr6:5508456 Cla06g00452 Cla-Chr6:5521569 5.49E-89 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g116 Blo01g00061 . . . . . . . . . . . . . . . . . . . . . . . Cla06g00451 Cam06g0481 Cec06g0485 Cco06g0484 Clacu06g0468 Cmu06g0468 Cre06g1242 . . . . . Csa06g01768 . . . Blo07g00161 . . Bpe05g00824 . . . . . . . . . . . . Bhi12g01895 Tan06g2720 . Lac11g0898 Hepe03g0073 . Lcy12g0774 . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000275 21 4 4 20 7 3 2 3 3 2 2 3 2 2 2 2 3 9 2 3 2 5 3 3 4 3 5 1 5 15 145
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g00451 Cla_Chr06 FPKM 9.646799 8.555596 1.567859 2.424087 0.692924 0.249728 0.277735 1.254657 1.572018 1.422212