Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00452 ATGGGTGTTTACACTTACGAAAACGAGGTGGCCTCCGTGATTCCTCCTGCTAAATTCTTTAAGGCATTCATTCTTGATGCTGACCATCTTTATCCTAAGATTGTGCCAAATCAGCCCCAAACTGAAATTGTCGAAGGAGATGGCGGCCCTGGAACTATCAAGAAGATCACCTTCAATTACGGGGGACAAGTGAAAACTATAACACACAGGCTAGACGTAGTGGACGAAGCATCGTTGACGTACAAATATACGGTGTTAGAAGGGGATCTTATTTCAGATACTATTGACCAAATTGTAAAGGAAATAAAAGTAACAGCAGGTCCTGACGGAGGATCCATTTTGAAGAGCACTAGCATTTACCACACCAAAGAAGACAACCAACTCGATCAAGAGAAGCTCAAGAGTGGCGAGGAAAAGGGATTGGCCCTTCTCAAAGCCGCCGAGAGTTACCTGTTGGCCAACCCCGACGAATACAACTAA 480 44.58 MGVYTYENEVASVIPPAKFFKAFILDADHLYPKIVPNQPQTEIVEGDGGPGTIKKITFNYGGQVKTITHRLDVVDEASLTYKYTVLEGDLISDTIDQIVKEIKVTAGPDGGSILKSTSIYHTKEDNQLDQEKLKSGEEKGLALLKAAESYLLANPDEYN 159
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5521569 5522442 + ClCG06G004850.1 Cla06g00452 274644

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00452 159 Gene3D - 2 158 IPR023393 -
Cla06g00452 159 SUPERFAMILY Bet v1-like 2 157 - -
Cla06g00452 159 PRINTS Major pollen allergen Bet V1 signature 3 23 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Cla06g00452 159 PRINTS Major pollen allergen Bet V1 signature 26 36 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Cla06g00452 159 PRINTS Major pollen allergen Bet V1 signature 49 58 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Cla06g00452 159 PRINTS Major pollen allergen Bet V1 signature 65 84 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Cla06g00452 159 PRINTS Major pollen allergen Bet V1 signature 84 97 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Cla06g00452 159 PRINTS Major pollen allergen Bet V1 signature 109 125 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Cla06g00452 159 PRINTS Major pollen allergen Bet V1 signature 143 153 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Cla06g00452 159 PANTHER PR-10 TYPE PATHOGENESIS-RELATED PROTEIN-RELATED 1 159 - -
Cla06g00452 159 PANTHER - 1 159 - -
Cla06g00452 159 CDD Bet_v1-like 5 151 - -
Cla06g00452 159 SMART Bet_v_1_2 1 154 IPR000916 GO:0006952
Cla06g00452 159 Pfam Pathogenesis-related protein Bet v 1 family 1 154 IPR000916 GO:0006952
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00452 - - - csv:101214193 277.33
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g00452 Cla-Chr6:5521569 Cla05g02522 Cla-Chr5:36567084 4.12E-08 dispersed
Cla06g00451 Cla-Chr6:5508456 Cla06g00452 Cla-Chr6:5521569 5.49E-89 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g118 . . . . . . . . . . . . . . . . . . . . . . . . Cla06g00452 Cam06g0482 Cec06g0486 Cco06g0485 Clacu06g0469 Cmu06g0469 Cre06g1243 Cone14ag0741 . Cone7ag0123 Cone4ag0126 . Csa06g01769 . . . . . . . . . . Sed12g0800 . . . . . . . . Bhi12g01893 Tan06g2718 Cmetu06g2208 Lac11g0897 . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000275 21 4 4 20 7 3 2 3 3 2 2 3 2 2 2 2 3 9 2 3 2 5 3 3 4 3 5 1 5 15 145
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g00452 Cla_Chr06 FPKM 199.255051 222.732956 337.700134 328.808716 125.366913 135.406372 120.814568 237.459854 241.082306 223.823608