Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00456 ATGACTGATCGACTCGCTCTCCAATTCGTTCATCGTTCTCTATCTCTAGGGCATCCCGCTTCGCATCGGACCCCAATCCGCTCTACGTTTGAGCTTCAGCTTGCGTTCCCTTTCTCTTTCTGTATTGCGTACTCTCCTCTTTGCTCCGGCTCCAGCTCCAGCTCCGGCCTTCTTCTTTCAAGTAACCGCCGGCGAATATCTCCGATCAACGCGTTGTCAAATTCCATGGTGAATGAAGCACAACCAAAGGAACTGCGAGATGAGTCCGATTTTGAAGCCATCTTCTCCGACAGCGATTATATATCCGTTTGTGGCTTTGGTTCTCTCCTCTCTGAGAGGAGTGCGCGAAGTACCTTTCCTGAGCTGATCAACTTTAGAGTGGCGAGATTGAACGGCTTCAGACGCCTTTTTGGAAATGTAGCTCCTATATTCTTTGAGCGCGGCATTGCTAAACCTGAAACCAAGGAGATCTCCAGCTTGTGTGCGGAGCCTTGCGAAGGAGAAAATATCATAATTACTGTTTTCGAGATTAAGAAGTCTGAGATTCCAGCGTTTATACAGAGAGAGATTGAGTTTCGATTTCTAGCTGTTCTTCCTGAAACATTAGATGGAAAGCTATATGATAAACCTGCGGTATTTACATTGCAGGTGCTTTGTTCTCGATCCACTGATGAGGAGTTTTTCCAAGTTAGATGCAAAGGGAATAAGGACATTTTTTTTCATCATTATGGCCGTCATAATATTGATAAGATATGGAGAGATGATATCTTACCTTGTCGCGTCTATCTTCGACACTGTATTTTAGCTGCAAAAAACCTGGGTGACGAAGCTTATAACAACTTTCTGGATCACACTTTCCTTGGAGATCGTAGAACAACCATCCGTGAATATTTGACCGGTTATGGTTCAGGCATTATGGAAGAGGAACCTCCAGAATCCCTCAAGTTTCGATATGGCGGTTGA 963 44.65 MTDRLALQFVHRSLSLGHPASHRTPIRSTFELQLAFPFSFCIAYSPLCSGSSSSSGLLLSSNRRRISPINALSNSMVNEAQPKELRDESDFEAIFSDSDYISVCGFGSLLSERSARSTFPELINFRVARLNGFRRLFGNVAPIFFERGIAKPETKEISSLCAEPCEGENIIITVFEIKKSEIPAFIQREIEFRFLAVLPETLDGKLYDKPAVFTLQVLCSRSTDEEFFQVRCKGNKDIFFHHYGRHNIDKIWRDDILPCRVYLRHCILAAKNLGDEAYNNFLDHTFLGDRRTTIREYLTGYGSGIMEEEPPESLKFRYGG 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5547793 5556428 - ClCG06G004890.2 Cla06g00456 274648

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00456 320 PANTHER OS05G0358400 PROTEIN 60 320 - -
Cla06g00456 320 PANTHER OS05G0358400 PROTEIN 60 320 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00456 - - - csv:101211371 532.332
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g00456 Cla-Chr6:5547793 Cla06g00457 Cla-Chr6:5563819 6.00E-101 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g141 . . . . Bpe04g01100 . Bma04g01147 . Cmo08g01218 . . . . . . . . . . . . . . . Cla06g00456 Cam06g0486 Cec06g0490 Cco06g0489 Clacu06g0473 Cmu06g0474 Cre06g1247 Cone14ag0745 . . . . Csa06g01775 Chy11g01537 . . . . . . . . . . . . Cma08g01246 Cma17g00347 Car08g01120 . . Cpe17g00041 Bhi12g02027 . . Lac11g0890 . . Lcy12g0769 . . . . . . . . . . Cme11g02043
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003761 0 5 0 1 1 1 2 1 1 3 1 1 1 3 3 2 1 1 2 1 3 1 1 1 1 1 1 2 2 2 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g00456 Cla_Chr06 FPKM 75.054359 94.8283 29.677856 29.052414 140.584244 130.870972 141.253586 10.190065 12.729109 10.832654