Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00457 ATGGTGCTTTTCCCGGAAGTCATTGAAGAAATGGTAAGAAATATGTCGATAAAGAAAAAGAATAATGAAGATGATGGCGGTAAAGAAGGGGGTCGAGAAGTAATGAGTAAAGAGGGAAAAAGAAAAAAATCCATGATTTGTTTATCTGGAAGTGTTAAAACCACCAAGTTCGATGATATGGCTTCTGTTTGCTCCAAGAGAGGAAATAAAGGAATTAATCAGGATTCGCTCGTTGTTTGGGAGGATTATGGCAACCGAGGAGATGTAGTTTTATGTGGAATGTTTGATGGGCATGGGCCTTGGGGCCACATGATTAGCAAACAAGTCAGAAAGTCACTACCTTCTCAATTACTTACCAATTGGCAACAAAACCTTTCCATGCAAACCGACCAAAACCATCTCTTTCCTTTCAACCTATGGAAGCAATCTTGCTTAAAAACTTATGCCGCCATTGATGAAGAGCTCAAGCAACACCCTCGCATTGATTCTTTTTACAGTGGCACCACCGCTTTAACCCTCGTTAAACAGGGGCGACACCTTGTTGTTGCAAATGCTGGCGATTCACGGGCTGTGTTGGCGGTAACTTCTGGTGATGGCTGCTTGAAACCAATTCAACTCTCCGTTGATTTCCGACCTAATTTGCCTGGGACTCCAGGATTGGCAATTTCTAGAGCTTTTGGCGATTATTGCACCAAACAGTATGGTCTCATTTCTGTGCCTGATGTAAGCCATCGAATCATCACTACTTCAGATCAATTTGTCATTGTCGCCACCGATGGGGTATGGGACGTCATGTCGAATCAAGAAGCGGTTCACATAGTTTCTTCAACACCAAATAGGGAAATGTCGGCCAAAAGGCTAGTGGATTGTGCTGCACGTGCATGGAAATCAAAGAAACGAGGGTTTGCAAGGGACGACATATCATTTACGCCATTGTTTGAGCTTCTGATTCGCGCGGGCAGTGCCATATCGTTTCGCTCTCAAATTCGCTCATCTCTAAGCCATTCCCCTTCGCATCGCATCCTAATCCGAAGGAACTTCGAGATGAGTCCGATTTTGAATGAAGCAGAACCGAAGGAACTGCGAGATGAGTCTGATATTGAAGCAATCTTCTCCGACGGCGATTATATTTCTGTTTTTGGCGTTGAATCTCTCCTCTCAGAACCAAAGGAGCTGCGAGATGAGTCCGATTTTGAAGCAATCTTCTCCGACGGCGATTATATTTCCGTTTGTGGCTTTGGATCTCTCCTCTCTGAGAGGAGTGCGCGAAGTACTTTTCCTGATTTGATCAACTTTAGAGTTGCGAGATTGAACGATTTCAGACGCGTTTTCGGAATTATAGCCCCTATATTCTTTGACCACGGCATTGCTAAATCTGAAACCAAGGAGATTTCAAGCTTATTTGCGGAGCCTTGTGAAGGAGAAACTATCATCATTACAGTTTTCGAGATTAAGAAGTCTGAGATTCCAGCGTTCATACAGAGAGAGTTTGCGTTTCGATTTCTAGCTGTTCTTCCTGAAACATTAGACGGAAAGCTATATGATAAACCAGCGGAAACAAGGACATTTTTCTTCAGCATTATGGTCGTCATAATATTGATAAGATCTGGAGAGATGATATCTTACCTTGACGCGTCTATCTTCAACACTGGTAATATTTTAGCTGCAAAAAACCTAGGTGACATTGCTTATAACAACTTTTTGGATCACATTTTCTTGGGAGATCGTTGTACGACCATCCATGAATATTTGGTCGCTAATGGTTCATCCACTATAGAAGAGGAGCCTCCAAAATCTCTCAAATTTCGATATGGCGGTTGA 1821 42.72 MVLFPEVIEEMVRNMSIKKKNNEDDGGKEGGREVMSKEGKRKKSMICLSGSVKTTKFDDMASVCSKRGNKGINQDSLVVWEDYGNRGDVVLCGMFDGHGPWGHMISKQVRKSLPSQLLTNWQQNLSMQTDQNHLFPFNLWKQSCLKTYAAIDEELKQHPRIDSFYSGTTALTLVKQGRHLVVANAGDSRAVLAVTSGDGCLKPIQLSVDFRPNLPGTPGLAISRAFGDYCTKQYGLISVPDVSHRIITTSDQFVIVATDGVWDVMSNQEAVHIVSSTPNREMSAKRLVDCAARAWKSKKRGFARDDISFTPLFELLIRAGSAISFRSQIRSSLSHSPSHRILIRRNFEMSPILNEAEPKELRDESDIEAIFSDGDYISVFGVESLLSEPKELRDESDFEAIFSDGDYISVCGFGSLLSERSARSTFPDLINFRVARLNDFRRVFGIIAPIFFDHGIAKSETKEISSLFAEPCEGETIIITVFEIKKSEIPAFIQREFAFRFLAVLPETLDGKLYDKPAETRTFFFSIMVVIILIRSGEMISYLDASIFNTGNILAAKNLGDIAYNNFLDHIFLGDRCTTIHEYLVANGSSTIEEEPPKSLKFRYGG 606
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5563819 5576001 - ClCG06G004895.1 Cla06g00457 274649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00457 606 Gene3D - 51 312 IPR036457 -
Cla06g00457 606 CDD PP2Cc 60 308 IPR001932 -
Cla06g00457 606 Pfam Protein phosphatase 2C 220 291 IPR001932 -
Cla06g00457 606 Pfam Protein phosphatase 2C 86 214 IPR001932 -
Cla06g00457 606 PANTHER PROTEIN PHOSPHATASE 2C 41-RELATED 1 215 - -
Cla06g00457 606 PANTHER ALPHABET, ISOFORM E-RELATED 216 309 - -
Cla06g00457 606 PANTHER ALPHABET, ISOFORM E-RELATED 1 215 - -
Cla06g00457 606 SMART PP2C_4 50 312 IPR001932 -
Cla06g00457 606 MobiDBLite consensus disorder prediction 18 41 - -
Cla06g00457 606 SUPERFAMILY PP2C-like 60 308 IPR036457 -
Cla06g00457 606 ProSiteProfiles PPM-type phosphatase domain profile. 60 314 IPR001932 -
Cla06g00457 606 PANTHER PROTEIN PHOSPHATASE 2C 41-RELATED 216 309 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g00457 Cla-Chr6:5563819 Cla11g00927 Cla-Chr11:16035128 2.36E-80 dispersed
Cla06g00456 Cla-Chr6:5547793 Cla06g00457 Cla-Chr6:5563819 6.00E-101 tandem
Cla02g01501 Cla-Chr2:29542599 Cla06g00457 Cla-Chr6:5563819 6.72E-125 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00457 - - csv:101214034 549.28