Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00458 ATGGCGGACGAGTTACTCCACGACACTGGAATCCGAAAACGCCGCGTGTTCGTAACGCGAGGCTTAGACCAATTCCCTCACGGCAATGGCCCCCCGTCCATATATAGTGGGCCGGGCTGGGCCATATATGGGCCTCAAAAAAAGCAAAAAAAGAGGCCTTCAACGAGAAGAAATTTCGATCTCTCCATTTCTCTGTTTTCTGTTTTCTGTGGATTAAGACTCTTCAATTGTGGCCGAATTCGATCAAACCAAGCCGCTGTGGCGTTGGACAGATTAGGAATGGGATCGGAGCAGTTGATGGCCGGAGGCGGGCCTCGATACGTTCAAATGCAATCGGAGCCGCCTTCGGCTTCGATGTCGTCGTTTTTTTCATTTCATCACGACGCTCCTGAGCCGACAAGGATTTTTGATGAGTTGCCGCAGGCCACAATCATTTCCGTCTCTCGACCTGATGCCGGCGATATCAGTCCCATGCTTCTTTCTTACACAATCGAGTGCCAGTACAAGCAGTTTAAATGGCGCATGCTGAAGAAAGCTTCCCATGTATTTTATTTGCATTTCGCATTAAAGAAACGGGCATTCATTGAGGAAATTCACGAGAAGCAAGAACAGGTTAAAGAATGGCTTCAAAATCTAGGAATAGGAGATCAAACAACAGTGCCCCAAGATGAGGATGGACCCGATGATGAGACCGATCCTCTGCATCATGATGAAAGTTCTAAAAATAGGGATGTTCCATCCAGTGCAGCCCTGCCAATTATTCGGCCTGCCTTAGGAAGGCAGCACTCTATGTCTGATAGAGCTAAGAATGCAATGCAAGGGTATCTGAATCACTTTTTGAGTAATATGGATATTGTCAACTCTCGAGAGGTTTGCAGGTTTTTGGAGGTCTCTAAGTTATCATTTTCACCAGAATACGGCCCAAAATTGAAAGAGGATTATGTCATGGTGAAGCACCTACCTAAAATTCCGAAGGAAGATGACTCTAGGAAATGTTGTCTATGCCCTTGGTTTGGTTGTTGTAATGACAATTGGCAAAAGGTGTGGGCTGTATTAAAACCTGGGTTTTTGGCCTTGTTGGGAGATCCTTTTGATACTCAACCAATGGATATTATAGTTTTTGATGTGCTACCTACTTCGGATGGCAATGGAGATGGACGAGTATCCCTGGCTAAGGAAATTAAAGAGCGAAATCCATTACGACATTCATTTAAGGTGACATGTGGAAATAGGAATATTAGGATTAGAGCAAAGAATGGATCCAAGGTTAAAGATTGGGTTGCTGCAATTAATGATGCTGGACTGAGGCCTCCTGAGGGCTGGTGTCATCCTCACCGTTTTGGCTCTTATGCTCCACCAAGAGGTTTGACTGAAGATGGTAGTAAGGCTCAGTGGTTCATTGATGGCCTAGCAGCTTTTGAAGCTATTGCCTTTTCCATTGAACGTGCAAAATCAGAGATTTTCATTTGTGGTTGGTGGCTTTGCCCAGAATTGTATCTGAGGCGTCCTTTTGTTTCAAATGCTTCATCTAGGCTTGATGCTTTACTTGAAGCAAAAGCTAAGGAAGGGGTTCAGATATACATTCTTCTCTACAAAGAGGTTGCCCTTGCTTTAAAAATTAATAGTGTTTATAGCAAGAGAAAACTTCTTGGTATCCATGAGAACGTGAGAGTATTGCGCTACCCCGACCACTTCTCCAGCGGTGTGTACTTATGGTCCCACCATGAAAAACTTGTCATTGTTGATTATCATATTTGCTTTATTGGAGGACTGGATTTATGCTTTGGTCGTTATGATACACCCGAACATAAAGTTGGTGATTGTCCTCCTTCAGTATGGCCTGGGAAGGACTACTATAATCCAAGGGAATCTGAGCCAAATTCATGGGAAGATACCATGAGAGATGAGTTGGATCGCAAGAAATATCCTCGCATGCCTTGGCATGATGCAATTCCATTACTTATGCCTCAGCATCATATGGTCATTCCTCATTACTTGTGGAATAGCCGAGAGTTGGAGGTTGAAAAGAAGAGTTTTGACAATTCTAGAGGAACAACAGTGCAGGATTCGTTTTCTCGAGGATCATCTTTCCACGATATTCCATTGCTTTTGCCTCAAGAGGCTGATGGACAGGATGCTGAAAATGAAGGTCCAAAATTAAATGGACTGGAGCCCATTGTCAATCCCCTTGATCAGCCAAGTAAGGTCAGCAGCGGTCTCTCTTTTTCTTTCAGGAAGATCAAAGTTGAACCCGTAGGACCCGATATGCCTCTGAAAGGTTTTGTTGATGATCTTGACCATTTGGATTCCCATGGAAAGTTGTCTGGAGATGGGAAAACACATCATCTTGTCAAAAGTTCGGATTTTGAGTGGTGGGAAACACAAGACAGAGGACATCATGGTGGCTTCACAGATGAATCTGGACAAGTTGGTCCATGTGCTTCATGTCGTTGCCAGGTCATCAGAAGCGTCAGTCAGTGGTCTGCTGGGACAAGCCGAACTGAAGAAAGCATTCACACTGCATACTGCTCTCTTATTGAGAAAGCAGAACATTTTATCTACATCGAGAATCAATTTTTTATATCAGGCCTCTCGGGAGACGATTCAATACGGAACCGTGTATTAGAAGCATTATACCGCCGCATAATGAGAGCCTACCGTGAAAAGAAGATTTTTAGGGTCATTATTGTCATACCACTCTTACCTGGATTTCAGGGGGGTCTGGACGATAGTGGTGCAGCATCGGTTAGAGCTATAATGCATTGGCAGTATCGAACTATATGTCGAGGACAGAATTCAATATTGCATAATCTTTATGATCTCCTTGGTTCAAAAGTTCATGATTATATATCATTTTACGGCCTCAGAGCTTATGGTAAACTCTTTGATGGTGGTCCTGTGGCTACAAGCCAGGTGTACGTGCATAGTAAAATTATGATTATTGATGATTGTATTGCTTTGATTGGATCGGCTAATATCAACGACAGAAGTTTACTTGGTAATAGGGATTCCGAGATTGCTATTGTTATTGAAGATAACGAACTCATCAATTCATATATGGGAGGACAACCATGGAAAGCAGGGAAATTTTGCTGGAGTCTACGTCTCTCTCTTTGGTCGGAACATCTCGGTCTTCGTCCCGGACAGATCAATCAAATAGTTGACCCAGTTGCTGATTCAACCTACAAGGATACGTGGATGGCAACTGCCAAGAGCACTGACAATAAACTGATGATTTTCAAACAGACAAACACAACAATATACCAAGATGTTTTTTCTTGCTTACCAAACGACCTCATAAATTCAAGAGCTGGACTGAGACAGAGCGTTACAATCTGGAAAGAGCGACTGGGACACACGACAATAGATCTAGGAATTGCCCCTGAGAAGCTTGAGTTTTATAAGAATGGAGAAATAGAAAGGATTGATCCAATGGAGAGATTAAGCTCAGTGAAGGGGCATCTTGTTTCCTTCCCACTGGAATTCCTCAGCAAAGAAGACTTAAGACCTGTGTTCAATGAGAGTGAGTATTATGCATCTCAAGTTTTTCATTAA 3555 43.15 MADELLHDTGIRKRRVFVTRGLDQFPHGNGPPSIYSGPGWAIYGPQKKQKKRPSTRRNFDLSISLFSVFCGLRLFNCGRIRSNQAAVALDRLGMGSEQLMAGGGPRYVQMQSEPPSASMSSFFSFHHDAPEPTRIFDELPQATIISVSRPDAGDISPMLLSYTIECQYKQFKWRMLKKASHVFYLHFALKKRAFIEEIHEKQEQVKEWLQNLGIGDQTTVPQDEDGPDDETDPLHHDESSKNRDVPSSAALPIIRPALGRQHSMSDRAKNAMQGYLNHFLSNMDIVNSREVCRFLEVSKLSFSPEYGPKLKEDYVMVKHLPKIPKEDDSRKCCLCPWFGCCNDNWQKVWAVLKPGFLALLGDPFDTQPMDIIVFDVLPTSDGNGDGRVSLAKEIKERNPLRHSFKVTCGNRNIRIRAKNGSKVKDWVAAINDAGLRPPEGWCHPHRFGSYAPPRGLTEDGSKAQWFIDGLAAFEAIAFSIERAKSEIFICGWWLCPELYLRRPFVSNASSRLDALLEAKAKEGVQIYILLYKEVALALKINSVYSKRKLLGIHENVRVLRYPDHFSSGVYLWSHHEKLVIVDYHICFIGGLDLCFGRYDTPEHKVGDCPPSVWPGKDYYNPRESEPNSWEDTMRDELDRKKYPRMPWHDAIPLLMPQHHMVIPHYLWNSRELEVEKKSFDNSRGTTVQDSFSRGSSFHDIPLLLPQEADGQDAENEGPKLNGLEPIVNPLDQPSKVSSGLSFSFRKIKVEPVGPDMPLKGFVDDLDHLDSHGKLSGDGKTHHLVKSSDFEWWETQDRGHHGGFTDESGQVGPCASCRCQVIRSVSQWSAGTSRTEESIHTAYCSLIEKAEHFIYIENQFFISGLSGDDSIRNRVLEALYRRIMRAYREKKIFRVIIVIPLLPGFQGGLDDSGAASVRAIMHWQYRTICRGQNSILHNLYDLLGSKVHDYISFYGLRAYGKLFDGGPVATSQVYVHSKIMIIDDCIALIGSANINDRSLLGNRDSEIAIVIEDNELINSYMGGQPWKAGKFCWSLRLSLWSEHLGLRPGQINQIVDPVADSTYKDTWMATAKSTDNKLMIFKQTNTTIYQDVFSCLPNDLINSRAGLRQSVTIWKERLGHTTIDLGIAPEKLEFYKNGEIERIDPMERLSSVKGHLVSFPLEFLSKEDLRPVFNESEYYASQVFH 1184
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5582149 5601256 - ClCG06G004910.2 Cla06g00458 274650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00458 1184 CDD PLDc_vPLD1_2_yPLD_like_1 463 608 - -
Cla06g00458 1184 SMART PH_update 309 437 IPR001849 -
Cla06g00458 1184 PANTHER PHOSPHOLIPASE 651 1181 - -
Cla06g00458 1184 PANTHER PHOSPHOLIPASE 124 649 - -
Cla06g00458 1184 SUPERFAMILY Phospholipase D/nuclease 415 649 - -
Cla06g00458 1184 SMART pld_4 570 597 IPR001736 GO:0003824
Cla06g00458 1184 SMART pld_4 970 997 IPR001736 GO:0003824
Cla06g00458 1184 Gene3D Endonuclease Chain A 458 650 - -
Cla06g00458 1184 PANTHER PHOSPHOLIPASE D 651 1181 IPR015679 -
Cla06g00458 1184 PANTHER PHOSPHOLIPASE D 124 649 IPR015679 -
Cla06g00458 1184 Pfam Phospholipase D Active site motif 570 597 IPR001736 GO:0003824
Cla06g00458 1184 Coils Coil 191 211 - -
Cla06g00458 1184 CDD PLDc_vPLD1_2_yPLD_like_2 830 1014 - -
Cla06g00458 1184 Pfam PLD-like domain 843 1018 IPR025202 -
Cla06g00458 1184 SUPERFAMILY Phospholipase D/nuclease 810 1019 - -
Cla06g00458 1184 ProSiteProfiles PH domain profile. 344 435 IPR001849 -
Cla06g00458 1184 MobiDBLite consensus disorder prediction 215 246 - -
Cla06g00458 1184 SUPERFAMILY PH domain-like 341 433 - -
Cla06g00458 1184 Gene3D - 336 433 IPR011993 -
Cla06g00458 1184 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 970 997 IPR001736 GO:0003824
Cla06g00458 1184 Gene3D Endonuclease Chain A 801 1027 - -
Cla06g00458 1184 PIRSF PLD_euk 126 1184 IPR016555 GO:0004630|GO:0006654|GO:0048017
Cla06g00458 1184 CDD PH_PLD 286 433 - -
Cla06g00458 1184 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 570 597 IPR001736 GO:0003824
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g00458 Cla-Chr6:5582149 Cla07g01298 Cla-Chr7:30122992 9.24E-12 dispersed
Cla02g01502 Cla-Chr2:29569741 Cla06g00458 Cla-Chr6:5582149 4.04E-66 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00458 K01115 - csv:101211856 2103.18