Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00460 ATGATAAAGGTGAGAAAACTAAATGTAATTTGTCAGACTCTTAGTGGATATGCTAAAAGCCCAATCCCTAGTCTCCATTTTAGGGCCCAAATTGAAGGCCCATTTAGAATGTGCGGTGGTGCCATCATCTCTGATTTCATTGAAAGAAAGCGAACTCGGAAACTTAGCAATGAATCTCTCTGGTCCCACATCGACCCTTTCTCCGACCTCCTCGGCCTCAATTATTCCCCTGTGAAAAGCGAGAAGCCTAAGAAAAGAGATCGAGCTACGGCGGCGGTGGCGGTGGAGAAGACTCCAAAAGCTCGGAAGAATTTGTACAGAGGAATCCGGCAACGGCCGTGGGGAAAATGGGCGGCGGAGATCCGGGACCCACGTAAAGGAGTTCGTGTTTGGCTCGGCACTTTCAACACCGCCGAGGAAGCCGCCAGAGCCTACGATGAAGCAGCCAAACGGATCCGAGGAGAAAAGGCCAAGCTCAACTTTGCTCCGGCGCCGCCGTCTTCGCCGCCGTTACCGGCGGCTCAGCCTCATTCCCCGGCGAAAAAGCGGTGCGTTCTCCCCGAGTTGACTCGGGGTGGCTCAAACGCCACCGGTCCGCCTCCGTGCAGACGTGTGGATAACTCGTGTGACAGCGACGAGTTCTACTACGGCGAGGAATTAGCGAGTTTGAGATCCTTCTTGGGATTGGATAGCGAGGAGCAACAGGCGAGTCAATTCGGTGGAAATGGCGAGTTTGAGCGAGTTGATGTAGACCTTTGGATGATGGACGACATGTCGTTGAATGAGCAGAAGTTGAGTCAGCTGGTGTAA 810 53.09 MIKVRKLNVICQTLSGYAKSPIPSLHFRAQIEGPFRMCGGAIISDFIERKRTRKLSNESLWSHIDPFSDLLGLNYSPVKSEKPKKRDRATAAVAVEKTPKARKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDEAAKRIRGEKAKLNFAPAPPSSPPLPAAQPHSPAKKRCVLPELTRGGSNATGPPPCRRVDNSCDSDEFYYGEELASLRSFLGLDSEEQQASQFGGNGEFERVDVDLWMMDDMSLNEQKLSQLV 269
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5607507 5609233 - ClCG06G004930.2 Cla06g00460 274652

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00460 269 PANTHER DNA-BINDING DOMAIN 82 173 IPR044808 GO:0003700|GO:0009873
Cla06g00460 269 Gene3D AP2/ERF domain 105 163 IPR036955 GO:0003700|GO:0006355
Cla06g00460 269 PRINTS Ethylene responsive element binding protein signature 128 144 IPR001471 GO:0003700|GO:0006355
Cla06g00460 269 PRINTS Ethylene responsive element binding protein signature 106 117 IPR001471 GO:0003700|GO:0006355
Cla06g00460 269 ProSiteProfiles AP2/ERF domain profile. 105 162 IPR001471 GO:0003700|GO:0006355
Cla06g00460 269 Coils Coil 138 158 - -
Cla06g00460 269 SMART rav1_2 105 168 IPR001471 GO:0003700|GO:0006355
Cla06g00460 269 CDD AP2 106 161 IPR001471 GO:0003700|GO:0006355
Cla06g00460 269 MobiDBLite consensus disorder prediction 160 179 - -
Cla06g00460 269 Pfam AP2 domain 106 155 IPR001471 GO:0003700|GO:0006355
Cla06g00460 269 SUPERFAMILY DNA-binding domain 105 162 IPR016177 GO:0003677
Cla06g00460 269 PANTHER EREBP TRANSCRIPTION FACTOR 82 173 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00460 K09286 EREBP; EREBP-like factor - csv:101222764 372.089
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla05g00674 Cla06g00460 CCT
Cla05g00674 Cla06g00460 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g00460 Cla-Chr6:5607507 Cla07g01364 Cla-Chr7:30773535 2.81E-35 dispersed
Cla10g01062 Cla-Chr10:24646719 Cla06g00460 Cla-Chr6:5607507 8.46E-40 wgd
Cla05g00674 Cla-Chr5:6260120 Cla06g00460 Cla-Chr6:5607507 2.21E-45 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g146 . . . . . . . . Cmo08g01215 . Cma06g01543 Cma14g01606 . Car14g01425 . . . . . . . . . . Cla06g00460 Cam06g0491 Cec06g0494 Cco06g0493 Clacu06g0477 Cmu06g0478 Cre06g1251 Cone14ag0033 Cone15ag0034 Cone11ag0474 Cone18ag1036 . Csa06g01779 Chy11g01533 . . . . . . Bpe13g00674 . Bma06g01490 Sed09g0260 . Cmo14g01642 Cma08g01242 . Car08g01117 . . . Bhi12g02034 Tan06g2707 Cmetu11g1571 Lac11g0883 Hepe03g0081 . Lcy12g0762 Cla05g00674 Cam05g0740 Cec05g0747 Cco05g0747 Clacu05g0733 Cmu05g0698 Cre05g0772 Lsi09g01454 Csa03g01492 Chy06g00730 Cme11g02037
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002900 0 2 0 1 1 2 2 2 2 2 2 2 3 2 2 2 2 2 1 2 3 2 2 2 2 2 2 3 2 1 55
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61249 PF00847 AP2 1.60E-15 CL0081 Cla TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g00460 Cla_Chr06 FPKM 0.699804 0.914166 2.513629 3.03663 1.612679 2.121548 1.566067 2.965069 3.564422 3.649457