Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00461 ATGGCGTCCTCAGCCACTCGGCGCACTTTACTCACTGTTCTTAGCCGAAGCCTCTCTTCTTCATCACCATCTTCTTCTTCCTTCTTCCTTTCATCTTCTATTTCTTCTCGCCTCCGATTCGCTTTTCCTCTGCTCAACAGACACGATCAAATAATCCCTAATTCATTCAATCTTCCTATTCGATTCAAGGCTTCGGGATCCGGATACTCTCCCCTCAACGATCCTTCTCCTAATTGGAGCAATCGACCTCCAAAAGAGACGATACTCCTCGATGGCTGCGATTACGAACACTGGCTGATCGTGATGGAGTTTCCAAATGACCCAAAACCATCGGAGGAGGAGATGGTGAATTCCTATGTCAAAACACTAGCCGCTGTTGTCGGAAGTGAGGAAGAGGCGAAGAAGAAAATATACTCAGTCAGTACAACTACATATACTGGCTTTGGTGCCTTGATTTCTGAAGAGCTTTCTTACAAAGTGAAAGAATTGGCATCTGACTTGAGCTATTCATTCCGGATGAAACAGAATTGCCAGGTGTTCTATGGGTTTTACCAGATTCATATCTTGATGTTCCAAACAAAGATTACGGAGGCGATCTGTTTATCGATGGAAAGGTCATCCCCAGACCGCAGTATAGGTACAACGATAGGGAACCATCTGGTAGAAACAGGCCTCGTCCACGGTACGATAGACGCCGAGAAACTATGCAAGTTGAACGGAGACAACCGTTTCAGAGACAAAACTGGGGTCGAGACCAGAGAGATCCAATTCAACCACCAACCTCCATGGATGGTCAAAATACAGCTCGAAGTGGTGTTGGAGATTTCTCGACAAATCCAGGCGAGTTTAATCGGAGCAATCACTGATAGTGGATGTTTTAAAATGTGA 888 45.38 MASSATRRTLLTVLSRSLSSSSPSSSSFFLSSSISSRLRFAFPLLNRHDQIIPNSFNLPIRFKASGSGYSPLNDPSPNWSNRPPKETILLDGCDYEHWLIVMEFPNDPKPSEEEMVNSYVKTLAAVVGSEEEAKKKIYSVSTTTYTGFGALISEELSYKVKELASDLSYSFRMKQNCQVFYGFYQIHILMFQTKITEAICLSMERSSPDRSIGTTIGNHLVETGLVHGTIDAEKLCKLNGDNRFRDKTGVETREIQFNHQPPWMVKIQLEVVLEISRQIQASLIGAITDSGCFKM 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5618608 5620905 - ClCG06G004940.2 Cla06g00461 274653

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00461 295 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED 52 163 IPR039206 GO:0016554
Cla06g00461 295 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 3, MITOCHONDRIAL 52 163 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00461 - - - csv:101220078 259.225
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g00461 Cla-Chr6:5618608 Cla07g00955 Cla-Chr7:25729528 3.91E-39 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g148 Blo01g00063 Blo12g00141 . . . . . Bma05g01026 . Cmo17g00331 . . . . . . . . . . . . . . Cla06g00461 Cam06g0492 Cec06g0495 Cco06g0494 Clacu06g0478 Cmu06g0479 Cre06g1252 . . Cone7ag0130 Cone4ag0135 . Csa06g01786 Chy11g01532 . . . . . Bpe05g00826 . . . Sed02g1424 . . Cma08g01241 Cma17g00344 . Car17g00313 Cpe12g00292 . Bhi12g02035 Tan06g2704 Cmetu06g1492 . . . Lcy12g0760 . . . . . . . Lsi09g01453 . . Cme11g02035
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005631 0 1 1 1 1 1 1 1 1 2 1 1 2 2 2 1 1 2 1 1 2 1 1 1 1 2 2 1 4 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g00461 Cla_Chr06 FPKM 0.666667 0.738818 0.742085 0.0 0.0 0.0 0.505949 2.382729 1.45465 1.764771