Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00463 ATGTCAAACGGATTTGCCAATGGCGAAGGTGATAAAAAGAAGAAGAAAATCGCCATCGTTAGTGTCTCTTCTTTAATCCTGGTGGCAATGGTTGTCGCCGTCACCGTCGGCGTCAACAGTGCACCTCACGAAGAGCACAGCGACGATCACGGTGGCGAGACTCATGAGATTTCATCAACGACTAAAGCAATCCAAGCCATTTGTCAACCTACGGATTACAAAGAATCCTGCGAGAAGAGTCTAATGGCAGAAGCCGGTAATACAACAGACCCAAAAGAGCTAGTGAAAGTGGGATTCAAAATCGCCACGAGGAATCTAAACGAGGCGATAAGAAATTCCACCACGCTTCAAGAATTAGCCAAAGACCCAAGAACCAACCAAGCCCTTCAAAATTGTCGTGAGCTTTTAGAATATGCGATTGATGATTTGAACGAATCGTTCGAAAGAATCGGGACCTTCCAAATGTCCAAACTGGATGAGTTCGTTGGGGATTTAAAGATTTGGTTGAGTGGGGCCATGACGTACGAACAAACTTGTTTGGATGGATTTGAAAACACGACAGGCAATGCTGGGGAGAGAATGAAAGAGTTTCTGAAGTCAGCCCAAGAAATGACAAGCAACGGTCTTGCAATAGTGAATGAATTGTCTGGCATTTTGGGGACACTCCAAATCCCTGGAATGAGTGGACGACGACTTTTGGAAGACGAAATGCCGTCATGGGTGAGCGAGGGAAAGAGGCGACTGATGCAGGCAGGTGCGGCATCCATGAAGCCCGATTTGGTGGTGGCTCAAGATGGGAGTGGGAAGTACAAGACTATAAATGAAGCTTTGGTTGATGTGCCTTTGAAGAGTAACAAAACGTTTGTGATCTATGTGAAGGCTGGAATCTACAAGGAAATTGTTGTTATTCCAAAGGCTATGACTCATCTGACCATGTACGGTGACGGTCCATCCAAAACGGTGGTTACTGGTAGCTTAAACTTTATTGACGGTATTCAAACATTCAAGACGGCTACCTTCTCTGCAATTGGAGCTAATTTCTACGCTAGAGACATGGGATTCGAGAACACCGCTGGGGCTGCAAAGCACCAAGCTGTAGCCCTACGAGTCCAATCCGATAGATCAATCTTCTACAACTGTCAAATAGATGGCTACCAAGATACCCTCTACGCACACGCTCACCGTCAGTTCTACAGAGACTGCACAATCAGTGGCACCATCGACTTCGTGTTCGGTAACGCCGCCACCATTTTCCAGAACTGCAAGCTGGTGGTCCGAAAGCCAATGGATAACCAACAATGCATCGTCACGGCTCACGGCCGTCTCAACCGCCGTGAACCCACAGCATTGATCTTCCAAAGCTGCCATTTCATGGGTGACCCTGCTTACTTGCCCTTCAAGAACATCAACAAGGCATACTTGGGGCGTCCTTGGAAGGAATATTCACGAACCATTATAATCGGGTCTCAAATAGACGATATCATCCAGCCTGAAGGATGGTTGCCATGGATGGGCGATTTTGGGCTCAAAACCTTGTTCTACGCCGAGGTACAGAACAAAGGGCCAGGGGCTGATGAAAGCAAGAGAGTGAAGTGGCGAGGAATTAAACATATTACGCCACAACACGCCGCGGATTTCACTCCTAGACGATTTATTGATGGCGATGCTTGGATTCCTGCTAAGGGAATTCCCTACTCTTCTGGAATGATGTGA 1713 47.11 MSNGFANGEGDKKKKKIAIVSVSSLILVAMVVAVTVGVNSAPHEEHSDDHGGETHEISSTTKAIQAICQPTDYKESCEKSLMAEAGNTTDPKELVKVGFKIATRNLNEAIRNSTTLQELAKDPRTNQALQNCRELLEYAIDDLNESFERIGTFQMSKLDEFVGDLKIWLSGAMTYEQTCLDGFENTTGNAGERMKEFLKSAQEMTSNGLAIVNELSGILGTLQIPGMSGRRLLEDEMPSWVSEGKRRLMQAGAASMKPDLVVAQDGSGKYKTINEALVDVPLKSNKTFVIYVKAGIYKEIVVIPKAMTHLTMYGDGPSKTVVTGSLNFIDGIQTFKTATFSAIGANFYARDMGFENTAGAAKHQAVALRVQSDRSIFYNCQIDGYQDTLYAHAHRQFYRDCTISGTIDFVFGNAATIFQNCKLVVRKPMDNQQCIVTAHGRLNRREPTALIFQSCHFMGDPAYLPFKNINKAYLGRPWKEYSRTIIIGSQIDDIIQPEGWLPWMGDFGLKTLFYAEVQNKGPGADESKRVKWRGIKHITPQHAADFTPRRFIDGDAWIPAKGIPYSSGMM 570
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5642876 5644588 + ClCG06G004960.2 Cla06g00463 274655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00463 570 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 62 216 IPR035513 -
Cla06g00463 570 Gene3D - 253 569 IPR012334 -
Cla06g00463 570 TIGRFAM PME_inhib: pectinesterase inhibitor domain 59 215 IPR006501 GO:0004857
Cla06g00463 570 Pfam Plant invertase/pectin methylesterase inhibitor 63 211 IPR006501 GO:0004857
Cla06g00463 570 ProSitePatterns Pectinesterase signature 1. 284 303 IPR018040 -
Cla06g00463 570 PANTHER PECTINESTERASE 17 569 - -
Cla06g00463 570 SMART PMEI_2 59 211 IPR006501 GO:0004857
Cla06g00463 570 Gene3D Invertase/pectin methylesterase inhibitor family protein 58 216 IPR035513 -
Cla06g00463 570 ProSitePatterns Pectinesterase signature 2. 403 412 IPR033131 -
Cla06g00463 570 Pfam Pectinesterase 259 555 IPR000070 GO:0030599|GO:0042545
Cla06g00463 570 MobiDBLite consensus disorder prediction 41 61 - -
Cla06g00463 570 MobiDBLite consensus disorder prediction 42 56 - -
Cla06g00463 570 PANTHER PECTINESTERASE 17 569 - -
Cla06g00463 570 SUPERFAMILY Pectin lyase-like 256 568 IPR011050 -
Cla06g00463 570 CDD PMEI-like_3 66 217 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla05g00670 Cla06g00463 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g01645 Cla-Chr3:32341528 Cla06g00463 Cla-Chr6:5642876 0 dispersed
Cla04g01212 Cla-Chr4:27253432 Cla06g00463 Cla-Chr6:5642876 1.27E-17 dispersed
Cla06g00463 Cla-Chr6:5642876 Cla09g00131 Cla-Chr9:1312134 9.24E-140 dispersed
Cla03g00581 Cla-Chr3:6573097 Cla06g00463 Cla-Chr6:5642876 1.76E-150 transposed
Cla11g00019 Cla-Chr11:260639 Cla06g00463 Cla-Chr6:5642876 0 transposed
Cla05g00670 Cla-Chr5:6218084 Cla06g00463 Cla-Chr6:5642876 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00463 K01051 - csv:101221958 1031.94