Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00466 ATGCCAGAGGTCCTTGAAGAGCTGAAGCAAATGGCTGACATTGGTTTCCCTGTTTTGGCAATGGGCTTAGTGGGTTATCTCAAAAATATGATCTCTGTTATTTGCATGGGCAGACTTGGAACTCTTCATCTCGCTGCTGGTTCTTTGGCCATTGGTTTCACTAATATCACTGGCTATTCAGTTCTTTCAGGCTTGGCTATGGGCATGGAGCCACTCTGTAGTCAAGCTTTTGGTTCTCATAATTCTTCCATTGCCTTTCTCACTTTGCAAAGAACGGTTCTTATTTTGCTTTTTGCTACTATTCCCATTGGGTTTCTTTGGCTAAATTTGGAGCCTCTTATGTTGGTTCTACATCAGAACCCAGAAATCACTAGAATTGCAACTGTTTATTGCCGTTTTGCAGTTCCTGATTTGGTATTGAATAGCCTTTTACATCCTTTGCGTATTTACCTTAGAAACAAAGGCACCACGTGGATTGTCATGTGGTGCAATTTGTTGGCTATTCTCCTACATGTTCCCATCGCTATTTTCTTGACTTTTCCTCTTGATCTTGGAATCCGTGGGATTGCTATCTCCAATTTTATAGCTAATTTCAATACCCTTTTCTTCCTTTTACTCTATTTGATATTCTGTACTCGTACTACTTTTTCCTCCTCTTCTTCTAAGGAGGCTAATCTGTTTGTGCCACTGAAAAGCAGCACCGTGGTTAGCGCCGCTACGGTTGGGGAGGAATGGGGAATGCTGATCAAGTTGGCCATTCCTAGCTGTCTTGGAGTTTGCTTGGAATGGTGGTGGTATGAGTTCATGACCATTCTCACTGGCTACCTTTATAACCCGCGGATTGCACTCGCCACTTCAGGCATTGTAATCCAAACAACTTCACTAATGTACACATTACCAATGGCTCTCAGTGCCGCTGTCTCGACTAGAGTTGGTCACGAGCTCGGCGCTGGTCGGCCCAAAAAGGCTCGACTAGCGGCGGTGGTGGCGATAGGATTGGCCTTGGTGGGCTCATTGATGGGACTCTCACTAACCACCATTGGCAGAAGGACATGGGGAAGAGTTTTCACAAAAGATGAGGAAATTCTAGAGCTGACAATGGCGGTTCTGCCCATAATCGGGCTGTGCGAGCTAGCAAATTGCCCGCAAACAACAAGCTGCGGGATTCTGAGGGGAAGTGCAAGGCCGGGGATCGGAGCAGGAATAAACTTCTGTTCATTTTACATGGTGGGGGCGCCGATGGCCGTCTTGTCGGCGTTTGTTTGGAAATCTGGGTTCGTGGGTCTTTGCTACGGGCTTTTGGCAGCCCAGATGGCATGTGTGGTCTCAATCTTAATAGTGGTCTTCAACACAGATTGGGAAATGGAGTCAATCAAAGCCGAAGACTTAGTAGGCAAAAACACCAATAACGTCTTTGCACATGCAATCCACACAGCCATACGTGAGGAAGGTCCTGAATTCCTCAAAGAATCACCTAATTTGGTGTCATATCAATGGATGAAGTTTCCCTTTCGAATGATCGGAAATCATATAACGAAAAAAATGGAAGAGGCATATGAAAGCACAGTAATAGACCAGCCATGTGTGGCCTTTGTGCATGTTTGGGAGGCAAAGAAGCTGTATAAATCTGATTGTCTTACCTGTCATCCATTTCTGGGGTACGGCGTTCTTCTAGTTTCAAACTCAAACGGGAAGAAGACTAAAACGCTGATTTCTCTTCGCAATAAGTATCCAAACAGAATTCAAAAAGTTGTGCAAATCAGCTTACCTCCCCATGGGGTGCAAATGGGCGTTATCTCATCTCACAGTGGATATTCCTCAATCGCAAACTATAATGCTGTTCGCTTTTCTTCTCCCATTGACGAAGAATTAGACTCCTTGACGAGATGCCGGGAAAAATCCACCAGATATGGGACACTGCAAGAAGATAAAGGTCACAAGTTCGTTTGTGTAGCTTCCATGGCGGACATGATCCGGCATGCCAAGGATAATAAAGAAGGCCAAGTCCTAGAGTACCTATATTGCAGCACCAACAACACGATTGTTCCCCCAACTTTCTCGATTTCGATTAACATAACGATCAAAGTTCGCGAGCCAGTGGGAGCTGTTCAACTTCTTGGCGGTTATTTTTGTCGAGGATAA 2142 45.0 MPEVLEELKQMADIGFPVLAMGLVGYLKNMISVICMGRLGTLHLAAGSLAIGFTNITGYSVLSGLAMGMEPLCSQAFGSHNSSIAFLTLQRTVLILLFATIPIGFLWLNLEPLMLVLHQNPEITRIATVYCRFAVPDLVLNSLLHPLRIYLRNKGTTWIVMWCNLLAILLHVPIAIFLTFPLDLGIRGIAISNFIANFNTLFFLLLYLIFCTRTTFSSSSSKEANLFVPLKSSTVVSAATVGEEWGMLIKLAIPSCLGVCLEWWWYEFMTILTGYLYNPRIALATSGIVIQTTSLMYTLPMALSAAVSTRVGHELGAGRPKKARLAAVVAIGLALVGSLMGLSLTTIGRRTWGRVFTKDEEILELTMAVLPIIGLCELANCPQTTSCGILRGSARPGIGAGINFCSFYMVGAPMAVLSAFVWKSGFVGLCYGLLAAQMACVVSILIVVFNTDWEMESIKAEDLVGKNTNNVFAHAIHTAIREEGPEFLKESPNLVSYQWMKFPFRMIGNHITKKMEEAYESTVIDQPCVAFVHVWEAKKLYKSDCLTCHPFLGYGVLLVSNSNGKKTKTLISLRNKYPNRIQKVVQISLPPHGVQMGVISSHSGYSSIANYNAVRFSSPIDEELDSLTRCREKSTRYGTLQEDKGHKFVCVASMADMIRHAKDNKEGQVLEYLYCSTNNTIVPPTFSISINITIKVREPVGAVQLLGGYFCRG 713
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5680081 5687440 + ClCG06G004990.2 Cla06g00466 274658

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00466 713 CDD MATE_eukaryotic 7 459 IPR045069 GO:0042910|GO:1990961
Cla06g00466 713 TIGRFAM matE: MATE efflux family protein 24 429 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cla06g00466 713 PANTHER MULTIDRUG RESISTANCE PROTEIN 3 469 - -
Cla06g00466 713 PANTHER PROTEIN DETOXIFICATION 55 3 469 - -
Cla06g00466 713 Pfam MatE 17 175 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cla06g00466 713 Pfam MatE 254 416 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00466 K03327 TC.MATE, SLC47A, norM, mdtK, dinF; multidrug resistance protein, MATE family - csv:101220547 900.582
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g00466 Cla-Chr6:5680081 Cla08g01188 Cla-Chr8:24821208 1.42E-148 dispersed
Cla06g00466 Cla-Chr6:5680081 Cla03g01546 Cla-Chr3:31105444 2.23E-140 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g165 . . . . . . . . Cmo08g01211 Cmo17g00327 . . . . . . . . . . . . . . Cla06g00466 Cam06g0500 Cec06g0502 Cco06g0501 Clacu06g0484 Cmu06g0485 Cre06g1259 . Cone15ag0759 Cone7ag0136 . Lsi05g01410 Csa06g01793 Chy11g01525 . Blo02g00499 . . . . . . . Sed09g0251 . . Cma08g01236 Cma17g00338 . Car17g00311 Cpe12g00288 Cpe17g00034 Bhi12g02039 Tan06g2694 Cmetu11g2071 Lac11g0854 Hepe03g0090 . Lcy12g0748 . . . . . . . Lsi09g01447 . . Cme11g02028
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010702 0 1 1 0 0 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g00466 Cla_Chr06 FPKM 11.461133 14.253855 11.265115 13.727099 15.095404 12.734441 12.708888 19.365572 17.866423 21.954321