Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00473 ATGAATTCTGAGCTGCTTCGAAGAAATCAACCGAATCCGACTCCACAAACTCAAAATCCGGTGATTGATTCACCAAGAACCCCGGCTGGTTCTTCCGGAAAATCCAGGAGTCCGATCCATTACATGCTTCGCGAGCAGCGTCTTCTCTTTGTTTTTGTCGGTATCGCCATTGCAACTCTGTTCTTCAATGTCGGTCGTTTCGCTTTTCCGCCGGAGCTGCGTGATGATCACCGTTATCAAGCGGCGATGAATCCGTTCATTCAATTGGATTCGACGATCCCGATGCGGAGAGTTTTGTACGAAACTCGCCGTGAAGGATCGTTAGGACGGGTGAATTTGGCGGGGAAAGTCCCGCCGGGATTGAAGAAGAGGAACCTGAGGATTGTCGTTACTGGTGGCGCCGGATTCGTCGGAAGCCATCTCGTGGACCGTTTGATTGAGAGAGGCGATAGCGTGATCGTCGTTGATAATTTCTTCACTGGACGGAAGGATAATCTGGTTCATCATTTCGGAAACCCGAGATTTGAACTGATACGACACGACGTCGTTGAGCCGCTTCTATTGGAAGTTGATCAGATCTACCACTTGGCTTGCCCTGCTTCTCCTGTTCATTATAAATTCAATCCCGTCAAGACAATCAAGACAAATGTTGTCGGCACACTGAACATGCTAGGGCTTGCGAAGAGAGTCGGCGCTCGCTTTTTGCTCACTAGCACCAGCGAAGTCTACGGTGATCCGCTCCAACACCCGCAGGCTGAAACCTACTGGGGCAACGTCAATCCTATCGGTGTACGGAGCTGCTACGATGAAGGAAAGCGCACGGCGGAGACTTTGACAATGGATTACCACAGAGGCCTTGGCATTGAGGTGCGGATTGCTCGGATCTTCAATACTTATGGACCACGGATGTGCATCGATGACGGTCGGGTTGTGAGCAATTTTGTAGCACAGGCATTGAGAAAGGAGCCGTTGACAGTATATGGGGACGGCAAGCAAACCCGGAGTTTTCAATATGTTTCTGATCTGGTGGAGGGGTTAATGAAACTTATGGAAGGAGAGCACGTGGGCCCTTTTAATCTCGGCAACCCCGGCGAATTCACCATGCTCGAACTTGCCCAGGATTGGACTTTTATATTTTTTATACTTCGTTTCGTCTTTTATGTTTTAATTTTAAAATATTTAGGTTTGATCCTTACTGGGGTAATGATAGAGTTCAGGCCAAACACAGAAGACGACCCACACAAAAGAAAACCCGATATTTCCAAAGCTAAGGACCTTCTTGGTTGGGAGCCCACGGTGTCCCTTCGGAAGGGCCTTCCCCTTATGGTTTCCGACTTCCGCCAACGCATCTTCGGCGATTCCAAAGACGACAGCTCCTCCGCCGCCGTCGCCGCCCTTCTCTCCACCACCACCTCCTCGGTCTAG 1425 49.89 MNSELLRRNQPNPTPQTQNPVIDSPRTPAGSSGKSRSPIHYMLREQRLLFVFVGIAIATLFFNVGRFAFPPELRDDHRYQAAMNPFIQLDSTIPMRRVLYETRREGSLGRVNLAGKVPPGLKKRNLRIVVTGGAGFVGSHLVDRLIERGDSVIVVDNFFTGRKDNLVHHFGNPRFELIRHDVVEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQYVSDLVEGLMKLMEGEHVGPFNLGNPGEFTMLELAQDWTFIFFILRFVFYVLILKYLGLILTGVMIEFRPNTEDDPHKRKPDISKAKDLLGWEPTVSLRKGLPLMVSDFRQRIFGDSKDDSSSAAVAALLSTTTSSV 474
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5752549 5758375 + ClCG06G005060.2 Cla06g00473 274665

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00473 474 PANTHER UDP-GLUCURONIC ACID DECARBOXYLASE 4 401 460 - -
Cla06g00473 474 PANTHER UDP-GLUCURONIC ACID DECARBOXYLASE 4 1 373 - -
Cla06g00473 474 CDD UGD_SDR_e 127 447 - -
Cla06g00473 474 MobiDBLite consensus disorder prediction 1 37 - -
Cla06g00473 474 PANTHER UDP-GLUCURONIC ACID DECARBOXYLASE-RELATED 1 373 IPR044516 GO:0042732|GO:0048040|GO:0070403
Cla06g00473 474 Pfam GDP-mannose 4,6 dehydratase 130 440 IPR016040 -
Cla06g00473 474 Gene3D - 124 453 - -
Cla06g00473 474 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 124 451 IPR036291 -
Cla06g00473 474 PANTHER UDP-GLUCURONIC ACID DECARBOXYLASE-RELATED 401 460 IPR044516 GO:0042732|GO:0048040|GO:0070403
Cla06g00473 474 MobiDBLite consensus disorder prediction 1 34 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00473 K08678 UXS1, uxs; UDP-glucuronate decarboxylase [EC:4.1.1.35] - csv:101222435 775.393
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01632 Cla-Chr2:31078957 Cla06g00473 Cla-Chr6:5752549 2.38E-24 dispersed
Cla06g00473 Cla-Chr6:5752549 Cla10g01979 Cla-Chr10:35662886 0 dispersed
Cla07g00801 Cla-Chr7:22441825 Cla06g00473 Cla-Chr6:5752549 3.69E-12 transposed
Cla08g01257 Cla-Chr8:25489204 Cla06g00473 Cla-Chr6:5752549 1.36E-20 transposed
Cla09g01950 Cla-Chr9:37069713 Cla06g00473 Cla-Chr6:5752549 1.69E-162 transposed
Cla10g01044 Cla-Chr10:24276766 Cla06g00473 Cla-Chr6:5752549 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g183 . . . . . . . . . Cmo17g00321 . . . . . . . . . . . . . . Cla06g00473 Cam06g0508 Cec06g0509 Cco06g0511 Clacu06g0492 Cmu06g0493 Cre06g1265 . . . . . Csa06g01816 Chy11g01517 . . . . . . . . . . . . . Cma17g00331 . . Cpe12g00281 . . . . . . . . . . . . . . . Lsi09g01438 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000444 4 3 3 5 4 3 5 3 3 4 3 3 5 3 3 5 3 9 5 3 5 4 4 3 3 4 2 8 4 4 120
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g00473 Cla_Chr06 FPKM 0.121403 0.293465 0.271046 0.190936 0.236401 0.352057 0.50518 0.384336 0.606398 0.299554