Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00475 ATGGAGGAAGCCATTTCTCGAATCCTCACGGAGCTCGAAGAAGTTCGCCATTTCGACGACTCTACAACTCTCCATTCCCAACCTCCGCCGCCGCTCTCCGATTCCTCTCTCTTCGACCTTCAAAGCTTATTAGACAACTCAATCGGTACCGATGAACAACCACCACTTGATCGCCTCTACGACGACCTCTCGGCCAAATCCCTCTCTCCGTCTTCTCTTACCCGAGCCATCGCCTCCGCCATGGACGAGTCTTCCACTCGCGTTTCGATTTTAGCTTCTAGAGTCTATCTCTCCCTTCTTCTGGCCCCAAATGCACCGGTGTTCACGCTGTTCAATCCGATGGATTTTCTTTCGTTTCTCAGGTCGATGAGGCGATTATTGAAGCAGCGACCGCGGGCTCAACCGGACCAGGATGATTCTAGTAAGGAGTCTAATGCTCCCAAACGGAAGAGGAAAGCCGGTGTTAAGGGTAAGGGTTTGGGGAATTGTGCGCTGAGGCAGAGTTTTAGTGGCAGGTATGATGATGGTGAATTCGATGCAAGAGTCTTGTATCCTGTACTTGAGAGGTTAGAGAATTTAATGAGTTTGATTCATTTGGATCGATTTCCGGATAGTTTAAAATCTTTGATTGAAACCGTAATTGATATTCCAGTTTTGGCACTTGAAGTATGCACTAATTTAAGTATCTATAGTAAGTTCACTAATTTATGTTCACGGATTTTGAGTGCTACATTGCGTCCTGAGCATGGGGATATATCGAGTACTGCCGTTGAGGTGATTAAGTCTCTGTCACCATTGATTATTAATCATAAGGATCAGGCGCGGGCGTTTGCGCTAGGGTTTGTGACTATTCAAATAGCAAATGTAGCAAAGGAATCAGATGGTGTTAAGAGTGCTCTGGTGAATCTTCCAAGGTATTTGGTTCAGAAGGCTCCTGAGAAATCTGAGCCTCGTAGTTTAGCAGTTGATTCAATAATGGAGGTTCTTAAAGTGATGGAATTCCCCGATCAAATTGGGTTTGTGGATTATGTAGTGAAGATGACCAGAGGAAAGTCTAATCTTAGGCTGTTAGCGGTTGATCTTATCTCAATGCTGATCACGTCCTTGAGTGATCCAATGGCCATTGATTCCGAAAGCGAACTAAAGGATTCGTGGGGATTTGGGTGCTTGGTGGCATTGGTTCAACGTTGTTCAGATGCCAGTGCTCCAATTCGTGCTCGAGCACTTACCAACTTAGCTCACCTTGTGGTGTTCTTGTCTGAGAATGACAAGAATAAGGCCTTACTGGAGGAACTGTTGGGGTCTGGTGACAGACATTGCAAAAAAAGTGGAGGTGAAATTCATGCTCTTTTGCGAAAAAGGTGTATGGATGAGAAGGCGGCAGTTAGGAAGGCTGCATTATTTCTGGTTACCAAGTGCACAACCCTCCTTGGTGGAGCAATGGATGGAGATATGCTGAAAACGGTGGGAATTGCTTGTTCTGACCCACTTGTTAGCATACGGAAAGCTGCAATGTCGGCTCTCTCAGAGTGGCTACACTCTATTCCACGTTTAATTGCTGACAGTGAATCTAGCATTCAAGAAGAGTGTGAACACTTGTTTCAAGAACTAGTACTAGACCGGTTGTCTAGAGTTGGATCTTCAAGTTTACCTAAAGGAGCATTGAATCTTCTTAAAGAGATGAGTCATGCAGAGGTAATTCCTTGGGTGAGGAAAGTTTGTGCTAATTTGGGAAAAAAGAAAAAATTAAAACGCACAATTGCGGATTCACTTCAGATAATTATAAAGACATCTGAATCCTTTTGGCTAAGCCAATCTTTGCCTCCAGAGAGGTGGACAGCTCCCCCAGGTGCCTGGTTCCTGCTGGCAGAAGTATCGACTTATCTTGGGAAAGCCGTTGATTGGGAGTTTCTTCATCATCACTGGAAACTCCTTGATGATCATGGTAGGACTGAGTTTCAGAGTCCAGTGGCTCAAGTAGGTTTATTTGGAGAGGAAAACAACTCAGAGTCAAATTCCGTCACTTGGGCTCAAGATCGAGTTTTTCTCTTACAAACCATTTCTAATGTTTCTGTTGAGCTGCCTCCAGAACCTGCAGCAGAATTAGCTCATGAATTGCTTAAAAGGGTTGAAGAATTTAACATGCATTCAACGGAGGTGAATGCACATGTAAAAACACTTAAAACATTGTGTAAGCGGAAGGCTTTGCAATCTACTGAAGCCGATGCCCTTATCCTAAAATGGGTGAACCAGCTGCTTTCCAAAGCCTCTCACATATTGGAGAAGTACATATCCAAGCATGCAGAAGCAAACAAAGATGTGAACTTCGTAACTCCACCTCCTAAAAGTGGTAGTCGAATTGGGAAGAAAGCAACTGCCAGGAGCAAGTCCTTGTCCCGAGCAATCACTGCAGCTTACACCATTGGCTCTTTGATTCTCATTTGTCCATCGGCTGACATGACTACCATCATACCACTTCTCCACACCATTATCACTTCTGGAAACCGTGATCCCAAATCTAATAAACTACCAATTCAAACTGCATCTCTAAAGGAAACTGCCCCTTCTTTATACGTTCAAGCATGGTTGACAATGGGGAAGATTTGCCTTGCTGACGAGAAGCGTGCAAAGAGTTACATTCCTCTATTTGTACAGGAGCTTGGAAATAGTGATTGTGCAGCTCTTCGCAACAACCTTATTATCACAATGGCAGATTTTTGTGTACGCTATACTGCTCTAGTTGACTGCTACCTTACGAAAATCACAAAGTGCCTTCGGGACCCTTGTGAACTTGTCAGAAGACATACATTCATACTTCTATCGAGATTACTACAGAGGGACTATGTGAAATGGAGAGGGGTTTTGTTTCTTCGGTTTCTCTTGTCACTTGTTGATGAATCAGAGAAGATTCGTCAACTAGCAGATTTCCTTTTTGGGAACATTTTAAAAGTGAAGGCACCACTGTTGGCTTACAACAGTTTTGTAGAAGCAATTTATGTTTTGAATGACTGTCGTGCTCATTCTGGACATAGCGATTCAAATGCTTCACGAGCTGAAAGTCGACTATTCTCCATCCGAGGCAATGATGAAAGGTCGAGGTTCAAGAGAATGCACATTTATGTTTCTCTGTTGAAACAAATGGCTCCTGAGCATCTTTTGGCAACCTTTGCAAAGTTATGTGCAGAGATTCTTGTTGCAGCATCAGATGGTATGCTCAATATAGATGATACCACTGCACGGTCTGTTTTACAGGATACCTTTGATATTCTTGCTTGTAAAGAGATCCGACTATCGGTAAATCGAGTATCATCATCAGATTCTGGTGATGTAGATGAGGAAGGAGGCGAGAGCGGAGGAGCATCTGCTGCTAGAGGAAAGGTCATCACTCATGCAGTGAGAAAGAACTACAAGAACGAAATCGATGACTTATTGGTAGCCGATAAGCAACTTCAGAGAGAGCTCCTCTATGACATTCAAAAGTATGAATCTACCAAAGCCAAGTCAGCTGCTGCCGAGGCGGTCAACGAGATGCATAAGTCAACTAACTATCTTTCGCCTGAGGCTCCTCCTCAAGCTAGAAGTGCCATTAACAAGCTAACCTCAAAGATTCGAAATGACTTGAAAGTTGCTTCAGCCATTGCTGATGCAGCTGCTGCAGCCACAGCAAAATCTGTGCTTAGGGAAGTGAATAGAGGGGCTTCGACACCGCCTCTTGGTTCTCTAAGTTTGCCTAAACTCAAGTCTCGTACTGGTGGAAACAATGACACAAATACCTCACATTTTAATGTGATTGAATCTTTAAGAAAACGATGTCAACATCTGCAATTATGGAAAGAATTCCAAGCAAGTGGCAATGTCCGGTTTGGCAAGCTCCATGGAGAAATTATAGGGTCTTGCTGTCAGCAACAGGCATACCATGTGTTTTCAGCTGGTGATGACAAACAAGTTAAATACTGGGACATGGAACAGAATAAGGTAATTTGTCATTACCATGGTCATCTGAGTGGTGTTTACTATTTGGCTCTTCATCCAACAATCGATGTTTTGCTTACTGGGGACATGATTCTGTCTGCTGGTTTTCAGCAGAAGACTATAATCAATGCAATTACTGTCAATGAGGAGGGTGTTATGGTGACTGGAGGATCATCGTTGGAATCTGGTGATGTAGACAAGGAAGGAGGCGAGAATGGAGGAGCATTTGCTGCTAGAGAAAAGATCACCACTCATGAAGTGAGAAAGAACTACAAGAATGCAATTGATGACTTATTGGTAGCCAATCAACAACTTCAGAAAGAGCTTGTCGATGACATTCAGAACGGCTGTCAAGGTGGTCAACGAGATGCAAAAGTTAACTATCTCCTGAGGCTTTTTCTCAAGCCAGAATCGTCATTAACAAGCCAACCTCAAAACTTGAAACGACTTGAAACTGCTGCAGCCACGGCGAAGTTTGTGCTTAGGAAAGTGAACAGAGGGGCTACGACACCGCCTCTCAATTCTCTAAGTTTGCCAAAACTCAAGTCTCATACTGGTGGAAACAATGGCACAAGTATCTCACATTTAGATGTGATTGAATCCTTAAGTTGTTAG 4587 43.56 MEEAISRILTELEEVRHFDDSTTLHSQPPPPLSDSSLFDLQSLLDNSIGTDEQPPLDRLYDDLSAKSLSPSSLTRAIASAMDESSTRVSILASRVYLSLLLAPNAPVFTLFNPMDFLSFLRSMRRLLKQRPRAQPDQDDSSKESNAPKRKRKAGVKGKGLGNCALRQSFSGRYDDGEFDARVLYPVLERLENLMSLIHLDRFPDSLKSLIETVIDIPVLALEVCTNLSIYSKFTNLCSRILSATLRPEHGDISSTAVEVIKSLSPLIINHKDQARAFALGFVTIQIANVAKESDGVKSALVNLPRYLVQKAPEKSEPRSLAVDSIMEVLKVMEFPDQIGFVDYVVKMTRGKSNLRLLAVDLISMLITSLSDPMAIDSESELKDSWGFGCLVALVQRCSDASAPIRARALTNLAHLVVFLSENDKNKALLEELLGSGDRHCKKSGGEIHALLRKRCMDEKAAVRKAALFLVTKCTTLLGGAMDGDMLKTVGIACSDPLVSIRKAAMSALSEWLHSIPRLIADSESSIQEECEHLFQELVLDRLSRVGSSSLPKGALNLLKEMSHAEVIPWVRKVCANLGKKKKLKRTIADSLQIIIKTSESFWLSQSLPPERWTAPPGAWFLLAEVSTYLGKAVDWEFLHHHWKLLDDHGRTEFQSPVAQVGLFGEENNSESNSVTWAQDRVFLLQTISNVSVELPPEPAAELAHELLKRVEEFNMHSTEVNAHVKTLKTLCKRKALQSTEADALILKWVNQLLSKASHILEKYISKHAEANKDVNFVTPPPKSGSRIGKKATARSKSLSRAITAAYTIGSLILICPSADMTTIIPLLHTIITSGNRDPKSNKLPIQTASLKETAPSLYVQAWLTMGKICLADEKRAKSYIPLFVQELGNSDCAALRNNLIITMADFCVRYTALVDCYLTKITKCLRDPCELVRRHTFILLSRLLQRDYVKWRGVLFLRFLLSLVDESEKIRQLADFLFGNILKVKAPLLAYNSFVEAIYVLNDCRAHSGHSDSNASRAESRLFSIRGNDERSRFKRMHIYVSLLKQMAPEHLLATFAKLCAEILVAASDGMLNIDDTTARSVLQDTFDILACKEIRLSVNRVSSSDSGDVDEEGGESGGASAARGKVITHAVRKNYKNEIDDLLVADKQLQRELLYDIQKYESTKAKSAAAEAVNEMHKSTNYLSPEAPPQARSAINKLTSKIRNDLKVASAIADAAAAATAKSVLREVNRGASTPPLGSLSLPKLKSRTGGNNDTNTSHFNVIESLRKRCQHLQLWKEFQASGNVRFGKLHGEIIGSCCQQQAYHVFSAGDDKQVKYWDMEQNKVICHYHGHLSGVYYLALHPTIDVLLTGDMILSAGFQQKTIINAITVNEEGVMVTGGSSLESGDVDKEGGENGGAFAAREKITTHEVRKNYKNAIDDLLVANQQLQKELVDDIQNGCQGGQRDAKVNYLLRLFLKPESSLTSQPQNLKRLETAAATAKFVLRKVNRGATTPPLNSLSLPKLKSHTGGNNGTSISHLDVIESLSC 1528
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5764538 5778065 + ClCG06G005070.1 Cla06g00475 274667

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00475 1528 SUPERFAMILY ARM repeat 338 1183 IPR016024 -
Cla06g00475 1528 MobiDBLite consensus disorder prediction 1103 1122 - -
Cla06g00475 1528 PANTHER CONDENSIN-2 COMPLEX SUBUNIT D3 2 1267 - -
Cla06g00475 1528 PANTHER CONDENSIN-2 COMPLEX SUBUNIT D3 1410 1525 - -
Cla06g00475 1528 Gene3D - 318 544 IPR011989 -
Cla06g00475 1528 PANTHER CONDENSIN 2 1267 IPR026971 GO:0007076
Cla06g00475 1528 PANTHER CONDENSIN 1410 1525 IPR026971 GO:0007076
Cla06g00475 1528 Coils Coil 1412 1432 - -
Cla06g00475 1528 Coils Coil 1133 1153 - -
Cla06g00475 1528 SUPERFAMILY WD40 repeat-like 1290 1354 IPR036322 GO:0005515
Cla06g00475 1528 MobiDBLite consensus disorder prediction 1236 1257 - -
Cla06g00475 1528 MobiDBLite consensus disorder prediction 128 158 - -
Cla06g00475 1528 Gene3D - 1274 1366 IPR015943 GO:0005515
Cla06g00475 1528 Pfam non-SMC mitotic condensation complex subunit 1 895 1072 IPR032682 -
Cla06g00475 1528 MobiDBLite consensus disorder prediction 129 150 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00475 K11491 NCAPD3; condensin-2 complex subunit D3 - csv:116405799 1875.52
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g00475 Cla-Chr6:5764538 Cla10g01533 Cla-Chr10:30652885 2.17E-07 dispersed
Cla06g00472 Cla-Chr6:5739885 Cla06g00475 Cla-Chr6:5764538 3.04E-08 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g291 . Blo12g00017 . . Bpe04g01135 . . . . Cmo17g00320 . . . . . . . . . . . . . . Cla06g00475 . . Cco06g0513 . Cmu06g0495 . . . Cone7ag0144 . . . Chy11g01515 . . . . . . . . . Sed12g1134 . . . Cma17g00330 . Car17g00304 . . Bhi12g02048 Tan06g2683 Cmetu04g0061 Lac11g0844 Hepe03g0098 . Lcy12g0737 . . . . . . . Lsi09g01434 . . Cme11g02016
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010431 2 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 0 1 1 1 1 2 1 2 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g00475 Cla_Chr06 FPKM 0.0 0.0 0.043462 0.17364 0.0 0.0 0.013712 0.254335 0.091922 0.223751