Cucurbitales platform

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cla06g00478	ATGGGCGGCCAGATGCAGCAAAGCAATGCTGCGGCGGCGACTGCCCTTTACGACCACGCCGGCGGTGGGACCCTGCATAATGCAGGCCCCACTAACGACGCCGGTGATGCGGTCATGGCTCGGTGGCTCCAGTCCGCTGGCTTGCAGCATCTGGCCTCTCCCTTGGCTGATCAGCGCTCCCTCCTCATGCAGAGTTATGGAGCACAATCTGCCGAAGAGAAACAAAGGCTTTTAAAACTGATGAGAAACCTGAATTTTGGTGGGGAGTCTGGATCTGAACCACATACACCTACTGCCCAAGCTTCTGGAGTACTGGGTGCAATGGATGGCTATTATTCTCCAGAGTTTAGGGGAGATTTTGGTGCTGGACTTTTGGATCTCCATGCTATGGATGATACCGAGCTTTTGTCTGAGCACGTTATCTCAGAACCATTCGAGCCGTCACCATTCATTCCTAGTGGTACTAGACCATTTGAGGATGAATTTAATATAGCCAGCAGCAGGCAGCAAAGAAGCCAAGCTGATGAAGATGCTGTGGCCATGTTACCCGTGACTGAAAAAGAGAATGTTGCCAGAGAAAATAACGTGGCTAAAATCAAAGTTGTGGTGCGAAAGAGACCATTAAACAAGAAGGAACTTGCTCGTAAGGAGGATGATATTGTATCAGTATGTGACAATGCCTCTTTGACTGTTCATGAACCAAAACTAAAGGTGGACTTAACTGCATATGTGGAGAAGCATGAATTCTGCTTTGATGCAGTTCTTGATGAGTATGTTACCAATGATGAGGTTTATAGGGTTACCGTGCAACCAATTATCCCCATCATCTTTGAAAGGACAAAGGCTACATGTTTTGCTTATGGTCAAACAGGCAGTGGCAAGACATTTACAATGCAGCCATTACCTCTTAGAGCTGCCGAAGACCTTGTTCGTTTGTTACATCAGCCGGTATATCGCAATCAGAGATTCAAGTTGTGGCTTAGCTTTTTTGAGATATATGGTGGAAAATTGTTTGATCTACTCAGTGACAGAAAGAAGCTTTGCATGAGAGAAGATGGGCGGCAGCAGGTTTGTATTGTTGGACTTCAAGAATTTGAAGTGTCTGATGTACAAATTGTCAAAGAATATATCGAGAAGGGAAATGCAGCTAGGAGTACAGGGTCCACTGGTGCCAATGAGGAGTCTTCAAGGTCACATGCTATATTGCAACTTGCTGTTAAGAAACATCCTGAAGTAAAGGAATCCAGAAGGAACAATGACGGAAATGAGTTGAAAAGTGGGAAGCTTGTTGGGAAAATCTCTTTTATTGATTTGGCTGGCAGCGAAAGAGGTGCTGATACAACTGATAATGACCGTCAGACAAGTGGCAAGACATTTACAATGCAGCCATTACCTCTTAGAGCTGCCGAAGACCTTGTTCGTTTGTTACATCAGCCGGTATATCGCAATCAGAGATTCAAGTTGTGGCTTAGCTTTTTTGAGATATATGGTGGAAAATTGTTTGATCTACTCAGTGACAGAAAGAAGCTTTGCATGAGAGAAGATGGGCGGCAGCAGGTTTGTATTGTTGGACTTCAAGAATTTGAAGTGTCTGATGTACAAATTGTCAAAGAATATATCGAGAAGGGAAATGCAGCTAGGAGTACAGGGTCCACTGGTGCCAATGAGGAGTCTTCAAGGTCACATGCTATATTGCAACTTGCTGTTAAGAAACATCCTGAAGTAAAGGAATCCAGAAGGAACAATGACGGAAATGAGTTGAAAAGTGGGAAGCTTGTTGGGAAAATCTCTTTTATTGATTTGGCTGGCAGCGAAAGAGGTGCTGATACAACTGATAATGACCGTCAGACAAGGATTGAGGGAGCGGAAATCAACAAAAGTCTTTTGGCTTTGAAGGAATGCATCCGTGCCTTGGACAACGATCAGATTCATATACCCTTCCGTGGAAGCAAACTCACAGAAGTGCTCCGTGATTCCTTTGTTGGCAACTCAAGAACTGTTATGATATCATGCATTTCCCCGAATGCTGGTTCATGCGAACATACTCTCAATACTTTGAGATATGCTGACCGGGTCAAAAGTTTGTCCAAAAGTGGAAATGCAAAAAAGGACCCGGCTGTTAGTTCCAGTGTACCAATAGCTAGAGATGTTTCTTCAGCCCCGTCTATTCCAATTCCAACTGAAGCAGAAGATATGAATATGCTGCGTCAAGAGGTGAAATTAGGGGAATTGGGCAGAAGGATCGCAGAAAAAGAGAGTCTCTCCTCTTCCAACTTTGACATCCCAGCTACTGCTTTGCCATCAAGCAATAGCTTTCATGCACGAGAAGAGAAAGGTACAGGCATAACTGGAACTTCTGCATCATTCGACAAGGAGCCACCTGAAATGAGGAACGCTCATAGTGATCCAACGGGTCGCAAGATTCCCATGTATTCCCACAACTTAAATGATACAGAGGAGAAGGTGCAAAAGGTATCACCACCCCGAAGAAAATCAAACCGAGATGAAAAATCAGAAAAATTGGGGAGCTGGCAGAAGAAGGATAACGCTGTGCCTGATGTCACAACTGCAAGCTCCAAGCAGTATGGTCCAGGAATTTCTAATGCAAATGATGCTGGATCCAGAAAGTCTGAACCTGAGCCAACTCCTGATGGGAACATTAATGCAATACTGGAGGAAGAAGAGGCGTTAATTGCTGCGCATCGAAAAGAAATTGAGGACACTATGGAGATAGTGCGTGAAGAAATGAAATTGTTGGCAGAAGTGGATCAACCTGGAAGCCACATTGAAAACTACGTGACTCAGTTGAGTTTTGTGCTGTCCCGAAAGGCTGCGGGTTTGGTTAGTCTTCAAGCACGCCTTGCAAGGTTCCAGCATAGACTTAAAGAACAAGAAATACTGAGCCGAAAAAGAGTACCGCGTTAA	2925	44.58	MGGQMQQSNAAAATALYDHAGGGTLHNAGPTNDAGDAVMARWLQSAGLQHLASPLADQRSLLMQSYGAQSAEEKQRLLKLMRNLNFGGESGSEPHTPTAQASGVLGAMDGYYSPEFRGDFGAGLLDLHAMDDTELLSEHVISEPFEPSPFIPSGTRPFEDEFNIASSRQQRSQADEDAVAMLPVTEKENVARENNVAKIKVVVRKRPLNKKELARKEDDIVSVCDNASLTVHEPKLKVDLTAYVEKHEFCFDAVLDEYVTNDEVYRVTVQPIIPIIFERTKATCFAYGQTGSGKTFTMQPLPLRAAEDLVRLLHQPVYRNQRFKLWLSFFEIYGGKLFDLLSDRKKLCMREDGRQQVCIVGLQEFEVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAVKKHPEVKESRRNNDGNELKSGKLVGKISFIDLAGSERGADTTDNDRQTSGKTFTMQPLPLRAAEDLVRLLHQPVYRNQRFKLWLSFFEIYGGKLFDLLSDRKKLCMREDGRQQVCIVGLQEFEVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAVKKHPEVKESRRNNDGNELKSGKLVGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDNDQIHIPFRGSKLTEVLRDSFVGNSRTVMISCISPNAGSCEHTLNTLRYADRVKSLSKSGNAKKDPAVSSSVPIARDVSSAPSIPIPTEAEDMNMLRQEVKLGELGRRIAEKESLSSSNFDIPATALPSSNSFHAREEKGTGITGTSASFDKEPPEMRNAHSDPTGRKIPMYSHNLNDTEEKVQKVSPPRRKSNRDEKSEKLGSWQKKDNAVPDVTTASSKQYGPGISNANDAGSRKSEPEPTPDGNINAILEEEEALIAAHRKEIEDTMEIVREEMKLLAEVDQPGSHIENYVTQLSFVLSRKAAGLVSLQARLARFQHRLKEQEILSRKRVPR	974

Gff information

Chromosome	Start	End	Strand	Old_gene	Gene	Num
6	5800073	5808490	+	ClCG06G005100.1	Cla06g00478	274670

Annotation

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Cla06g00478	974	PRINTS	Kinesin heavy chain signature	645	666	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
Cla06g00478	974	PRINTS	Kinesin heavy chain signature	595	613	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
Cla06g00478	974	PRINTS	Kinesin heavy chain signature	279	300	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
Cla06g00478	974	SMART	kinesin_4	196	701	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
Cla06g00478	974	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	454	695	IPR027417	-
Cla06g00478	974	ProSitePatterns	Kinesin motor domain signature.	594	605	IPR019821	GO:0003777\|GO:0005524\|GO:0007018
Cla06g00478	974	Pfam	Kinesin motor domain	454	694	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
Cla06g00478	974	Pfam	Kinesin motor domain	204	451	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
Cla06g00478	974	Gene3D	Kinesin motor domain	177	453	IPR036961	-
Cla06g00478	974	Gene3D	Kinesin motor domain	454	701	IPR036961	-
Cla06g00478	974	MobiDBLite	consensus disorder prediction	759	886	-	-
Cla06g00478	974	Coils	Coil	947	967	-	-
Cla06g00478	974	MobiDBLite	consensus disorder prediction	759	787	-	-
Cla06g00478	974	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	193	449	IPR027417	-
Cla06g00478	974	PANTHER	KINESIN-RELATED PROTEIN 6	834	973	-	-
Cla06g00478	974	PANTHER	KINESIN-RELATED PROTEIN 6	5	454	-	-
Cla06g00478	974	ProSiteProfiles	Kinesin motor domain profile.	198	695	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
Cla06g00478	974	PANTHER	KINESIN-RELATED PROTEIN 6	454	838	-	-
Cla06g00478	974	PANTHER	KINESIN-LIKE PROTEIN	5	454	-	-
Cla06g00478	974	ProSitePatterns	Kinesin motor domain signature.	431	442	IPR019821	GO:0003777\|GO:0005524\|GO:0007018
Cla06g00478	974	CDD	KISc_KIF2_like	198	693	-	-
Cla06g00478	974	PANTHER	KINESIN-LIKE PROTEIN	834	973	-	-
Cla06g00478	974	PANTHER	KINESIN-LIKE PROTEIN	454	838	-	-
Cla06g00478	974	MobiDBLite	consensus disorder prediction	849	875	-	-
Cla06g00478	974	Coils	Coil	891	922	-	-
Cla06g00478	974	MobiDBLite	consensus disorder prediction	813	846	-	-

Pathway

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cla06g00478	K10393	KIF2_24, MCAK; kinesin family member 2/24	-	csv:101210544	950.658

Dupl-types

Select	Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
	Cla06g00478	Cla-Chr6:5800073	Cla06g00844	Cla-Chr6:12423263	6.99E-17	dispersed
	Cla06g00478	Cla-Chr6:5800073	Cla09g00188	Cla-Chr9:1890210	7.05E-22	transposed

Deco-Alignment

Select	Vvi1	Blo1	Blo2	Bda1	Bda2	Bpe1	Bpe2	Bma1	Bma2	Cmo1	Cmo2	Cma1	Cma2	Car1	Car2	Sed1	Cpe1	Cpe2	Bhi1	Tan1	Cmetu1	Lac1	Hepe1	Mch1	Lcy1	Cla1	Cam1	Cec1	Cco1	Clacu1	Cmu1	Cre1	Cone1	Cone2	Cone3	Cone4	Lsi1	Csa1	Chy1	Cme1	Blo3	Blo4	Bda3	Bda4	Bpe3	Bpe4	Bma3	Bma4	Sed2	Cmo3	Cmo4	Cma3	Cma4	Car3	Car4	Cpe3	Cpe4	Bhi2	Tan2	Cmetu2	Lac2	Hepe2	Mch2	Lcy2	Cla2	Cam2	Cec2	Cco2	Clacu2	Cmu2	Cre2	Lsi2	Csa2	Chy2	Cme2
	Vvi5g296	.	.	.	Bda08g00291	.	.	.	.	Cmo08g01203	Cmo17g00316	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Cla06g00478	Cam06g0512	Cec06g0513	Cco06g0516	Clacu06g0496	Cmu06g0498	Cre06g1269	Cone14ag0761	Cone15ag0770	.	.	.	.	Chy11g01510	.	.	.	.	.	Bpe05g00836	.	.	.	Sed02g1073	.	.	Cma08g01228	Cma17g00327	Car08g01104	Car17g00301	Cpe12g00278	Cpe17g00027	Bhi12g02054	Tan06g2680	Cmetu07g0697	.	.	.	.	.	.	.	.	.	.	.	Lsi09g01431	.	.	Cme11g02012

Syn-Orthogroups

Select	Orthogroup	Bda	Bhi	Blo	Bma	Bpe	Cam	Car	Cco	Cec	Chy	Cla	Clacu	Cma	Cme	Cmetu	Cmo	Cmu	Cone	Cpe	Cre	Csa	HCH	Hepe	Lac	Lcy	Lsi	Mch	Sed	Tan	Vvi	Total
	OG0007921	1	2	1	0	1	1	2	1	1	1	1	1	2	1	1	2	1	2	1	1	1	1	1	1	1	1	1	2	2	1	36

Transcriptome

Select	Gene	Chr	Type	da1	da2	da3	da4	da5	da6	da7	da8	da9	da10
	Cla06g00478	Cla_Chr06	FPKM	0.0	0.0	0.0	0.177951	0.0	0.222932	0.0	0.0	0.0	0.0