Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00479 ATGGAAGGCTCCTTAGGGCAAAAGCACAAACCTCAGGAGTTCACTCTTGTTTCGATTTCTGAGCTTGCTTCTTCGTCTTCCTCCTCGTCCTCTTCGTCCGCGCCGGTGGTTGCGCGGTTCAGTGGCGATTCCGGCGCGGCAGAGCTTCGGTTCCGGCAGGAGGCTGATTCCGATGACCTTGCTTTCGATCTTCGGACTTCTCAGATATTTCGGTTAGGCCCTGTTCAGTCAGTTTGCATTTCAGAAGGCGATGCCAGCGAAGAGAAATCTCATTCCAGAGGAGTTACCATTCAATTTAGAAACGTGGAAGAGAGCAGTGCATTTCATTCTGTTTTTGATAAGAGGAAGAAGGATGATATTGTCCAAGGGACCACCCATATACCAAATGGTGAAGTTTCCTTCTTAAAGAGCAAGTTCGACGATAAAATAGAATCATCATCTGCTAAGATGTACTTCCACTACTATGGACAACTTTTACATCAACAAAATATGTTGCAGGATTATGTGAGGACAGGAACATATTATGCGGCAGTAATGGAAAATCGTGCTGACTTCACTGGCCGAGTGGTTGTTGATGTTGGTGCTGGTAGTGGTATTTTGTCGTTATTTGCTGCTCAGGCTGGCGCAAAGCATGTTTATGCTGTGGAAGCATCTGAAATGGCTGAGTATGCTCGCGTATTAATTGCAGGGAACCCTGCCTTGAGTCAACGAATTACCGTAATTAAAGGCAAAGTTGAGGATGTAGAATTACCTGAGAAAGCAGACATTTTAATCTCAGAGCCAATGGGCACCTTATTGGTCAACGAAAGAATGCTGGAATCGTATGTGATCGCGAGGGATCGTTTTTTGCACCAAAATGGAAAGATGTTCCCAACAATAGGAAGGATTCACATGGCACCTTTCAGTGATGAATATCTATTTGTTGAAGTAGCTAACAAGGCACTCTTTTGGCAGCAACAAAACTATTATGGTGTTGATTTGACAGCCTTGCATGGATCGGCATTTCAAGGCTATTTTTCTCAGCCAGTGGTGGATGCTTTTGATCCAAGATTATTGGTGGCCGCGTCAATGTCTCATGTTTTAGACTTCACAAATATCAAGGAAGAGGAATTGTATGACATAGATATTCCTCTGAAGTTTGTTGCGACTGTGGGTGCCAGAATCCATGGATTGGCCTGCTGGTTTGATGTATTATTTAATGGCAGCACCGTGCAGAGGTGGCTTACCACTGCCCCAGGTGCACCGACAACCCATTGGTATCAGTTACGGTGTGTCCTTTCCCAGCCGATTTATGTCATGGCAGGGCAGGAAATTACCGGCAGACTTCACATGGTTGCTCACAGTGCCCAGAGTTACACGATTTATTTGACTCTATCAGCCAAAATGTGGGGCCCTGGTGCCGAGCAAGGAGGAATACTTCAGTCGTCCTCGTGCAAACTCGACCTGAAAGAGCCCTACTATAGAATGTCCCAACCACAAGCCTACCCCATGGTTCAAGATCAGCAACAACATCAGCTAATTCCACAGCAGGATCCCTTAAAGCCATTTCACAAGCTTCCTTCCCCGCTGGTTATGGCGGGTACGTGCGGCTCCACCGTCTATCTCTCCATTCCTTGCAATAAATTCACCATTTGCACAGCCAAGCCACTTCTTTCAGTTTCGTCTTCCATTTCCATTTCATCTCGTTCCAAGCTCACAAGAAGAAAAAATCACTTGCGCATCAAAATTCTCAAAACCCTAACTAAACCTCCCCCCTTCACTATCTCTCCCATTCCCCCTCAAAGCGAATCTTCAACTCCGATCGTATCTCCGGAAATCTCAGGTCCTTCCGGCGTCGAGACCGAGGTTTTATTTCCGGCGGAATCTTGCCCTTCCTCCACAGCCACGGACGGCGAATCTCGACTCTCCGGGAGCTCGAACGCTGCCTCGTTGTTTAATTTTGACGTTGCCAAATTTTCTTGGGGAAGTTTTGTCAGGTTTGGCGCTTACTTGCTTGCTGTTTTTGCGTTTCAGACAATCTGTACTGTGTGGGTTTTAGAATATGGTAGTTCGATTAAGGAAGATAAGAATTCAGATGAAGATTTGAGTGTTAGGAGAAGAAGCGGAAGAGAAGTGTTGTTGAATGGAAATGAGAGAATTGTGCTTGGAAATTTCGGGTCTGAAACGAATAAGTTGGTTTATTTGGAGGAAGCAAAAATGAGGGAAAAAATTGAAGAGATCAGATTGATGGCTAGGGCAGCAAGGATAGAGGAGAAAAATAAAATATCTGATGATTTTGAGGAAGACGACATGGAGGGTAGGAATGCAATTTCCAGGGCTAGGATTGGTATCGAGAAAGAGGTTGATGCTCGACTTGTCAAGTTAGAGAAGAGGCTAAATTCTGCCAAAGAAAAGATACCGGATTCACTGGTAAATTATTTGCTCAAGTCTGAAAATGTTGAGGATGCAGTGGAAAGGAATGGTTTCAATGGTGAAGAGAGGAATAAGAGTCTAATATTTAAGAAAAAGTTGAAATACAGAAACTCTTCTAGTGATGGAATGAAGAAACCTAAGGGGTTTCAAGGCTTTGTATCTAATGGGAAAAAGAGTGGCTCAAATGAGGGTACAATAGTGGAAGGTGCAACTTTTGTTGATGGTAATATGGGAGTGAAGGATACCGAAAAACGGGTAGATAAGAAAATCAAGGATAGTGTTTTAGAGATGTTCGAAGATGATGGCAGAAATTTTGCAAGCAATGGATCAGTATTACCACGGAAAAACAATAAAATGAATTTGGATCTTGGAAATAAGGAGACTTCTTCAGTTGAGATATCGAAGTCACAGAATTTAAAAGATGTAATGGAGAAAAGATCTTCTTCAGTGAGTTCAAATGACAGCGTTGGAAAGAAATCTAAGGCTGGTGAAGATAGAGGCAAACAATCAAACAAGAAGGCTGATTTATGGTGGTTGAATCTTCCTTATGTTCTAGTTATTTTTATGAATCGAGGTTCCGATGATGGAGAACTAGAAGGACTTTTCACCTTAAAGATTCCTTCCAAGACACAGGATATTGAGGAATCTACATATACAGTTGCTTTTGAAGACCATGTTGATGCAAATAACTTCTGTTATCTTCTGGAATCTTTTTTCGAAGAGCTCAAAAATTTCACAACCGACGTCGTTCCTCTGCCAACAAAAGAACTTGAGAAGGTCATAAAATCACATACAAGTAAAATGATTGTTGTGAAGAAGGGGCAACTACAGCTCTATGCTGGTCAACCGTTTGCCGATGTCGAGATGGCTTTGCATACTTTGGTTAAACGAAATGAGAATGTTATTTCTTTACATTCCGGTGGGAGCGTAGCCACCATTTCCCTGGATTTCATGATTCCATCGTCACTCTCTTCTTCTCCAAATCCAATCCCTGAATCATCTCCTCTTCCCCAACTCTCCACATTTCCATTTCAATTTCTGCATCTTTTCTCTTCCGATTTCACTCTCTTCTCTGCTGCTTTCCGTTTCTCATTTCCCATTTTCTTCAAATCCTTCCTCAAAGCTCCGGCGTTTCAACCTCAATTTGCTGTCGTCGCTTCATTTCAATCACCGGATTTTCACGTCTCCAAGAAACCTAAATTTTCTACTATGTCCTCGGATCGGCCAGTTGTTTCATCGAACTCTACAGTGGCTAGGCTCTCCCGGTATCCTGAAGAAACTTCGCAATTGCGTCGAGAAGTCCATGGTCCTTGCAGATTGTTGAAATTTGGGCTATCGAGGAGCTTCCATAGGTTTTGGGAGTCTGAAAATAGCGAGTTGTCGGAACAGGATGAGGTGAGGAATATCTTGTCTTACAATTACCAGATTGCGAAGAGTCGTGCAATTGGTTCGTTGCGGTCCTTCCCCAAGGATGTCATTGAATTGGATTCAGACTCGCAAACTGAAAGAGACGCTTCTGGAGATTCGAAGAATGAAGACGATGTCGAGGTGATTGAGGATGATAAGCAGGACCAGAGGCCTCGTGCGGTTGATACAGTGGAGGAATTGGACGCGAAAATGATGAATGTTCATCAGCCATCGTCGTCCTCGGTAGTTGTAGATTTGACAAATGACAATTCGAAAGTTGAAAGCACTGAGAAAATGCTTGGTGCTTTGTCACTGGATCGGGATTTGTCCAGTGTTTCTGCTTACAAAAAGTTGCTTCAGAGTGTGGAAAAGCGGACATCGAGACTGAAAAGCTTGGATTTCGAAATCGAGTTGAATGAGAAGCGTCGGTCAATTCTTCAATCACAAACTCCAAAGAATAAGCCTCTTGATGAGATTCCGCAGGAACTTTTTACTCCTCTTACGAAAGAGGAAGAAGCCGAGGTTGAACGTGCGCTCTCTACTAACCGGAGGAGGGTTTTGGTTGCTCATGAGAATTCAAATATTGAGATTACTGGGGAAACTTTGCAGTGTCTGAGACCAGGTGCTTGGTTAAACGATGAGGTGATTAATTTGTATCTTGAGTTGCTGAAAGAAAGGGAAAGAAGGGAGCCAGAGAAGTATTTGAAATGTCATTTCTTTAATACCTTCTTCTATAAAAAGTTAAATGGAAGGAATGGCTACGATTACAGATCTGTTAAAAGATGGACCAGCCAAAGAAAGTTGAAATATGAACTCATAGATTGTGATAAAGCAAGATATTTTGTAGATGAGGTGAAGGACAAGAGTGGAAAAGATATTGATGTAAGTTCTTGGGCACAAGAATTTGTCGAAGACCTTCCCGAGCAAGAAAATGGGTTCGATTGTGGAATGTTTATGATTAAGTATGCTGATTTTTATAGTAGAGGTTTGAATCTCTGTTTCAAGCAGGAACACATGCCTTACTTCCGACTTAGAACAGCCAAGGAAATTTTGAAATTGAGAGCTAACTGA 4890 42.78 MEGSLGQKHKPQEFTLVSISELASSSSSSSSSSAPVVARFSGDSGAAELRFRQEADSDDLAFDLRTSQIFRLGPVQSVCISEGDASEEKSHSRGVTIQFRNVEESSAFHSVFDKRKKDDIVQGTTHIPNGEVSFLKSKFDDKIESSSAKMYFHYYGQLLHQQNMLQDYVRTGTYYAAVMENRADFTGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMAEYARVLIAGNPALSQRITVIKGKVEDVELPEKADILISEPMGTLLVNERMLESYVIARDRFLHQNGKMFPTIGRIHMAPFSDEYLFVEVANKALFWQQQNYYGVDLTALHGSAFQGYFSQPVVDAFDPRLLVAASMSHVLDFTNIKEEELYDIDIPLKFVATVGARIHGLACWFDVLFNGSTVQRWLTTAPGAPTTHWYQLRCVLSQPIYVMAGQEITGRLHMVAHSAQSYTIYLTLSAKMWGPGAEQGGILQSSSCKLDLKEPYYRMSQPQAYPMVQDQQQHQLIPQQDPLKPFHKLPSPLVMAGTCGSTVYLSIPCNKFTICTAKPLLSVSSSISISSRSKLTRRKNHLRIKILKTLTKPPPFTISPIPPQSESSTPIVSPEISGPSGVETEVLFPAESCPSSTATDGESRLSGSSNAASLFNFDVAKFSWGSFVRFGAYLLAVFAFQTICTVWVLEYGSSIKEDKNSDEDLSVRRRSGREVLLNGNERIVLGNFGSETNKLVYLEEAKMREKIEEIRLMARAARIEEKNKISDDFEEDDMEGRNAISRARIGIEKEVDARLVKLEKRLNSAKEKIPDSLVNYLLKSENVEDAVERNGFNGEERNKSLIFKKKLKYRNSSSDGMKKPKGFQGFVSNGKKSGSNEGTIVEGATFVDGNMGVKDTEKRVDKKIKDSVLEMFEDDGRNFASNGSVLPRKNNKMNLDLGNKETSSVEISKSQNLKDVMEKRSSSVSSNDSVGKKSKAGEDRGKQSNKKADLWWLNLPYVLVIFMNRGSDDGELEGLFTLKIPSKTQDIEESTYTVAFEDHVDANNFCYLLESFFEELKNFTTDVVPLPTKELEKVIKSHTSKMIVVKKGQLQLYAGQPFADVEMALHTLVKRNENVISLHSGGSVATISLDFMIPSSLSSSPNPIPESSPLPQLSTFPFQFLHLFSSDFTLFSAAFRFSFPIFFKSFLKAPAFQPQFAVVASFQSPDFHVSKKPKFSTMSSDRPVVSSNSTVARLSRYPEETSQLRREVHGPCRLLKFGLSRSFHRFWESENSELSEQDEVRNILSYNYQIAKSRAIGSLRSFPKDVIELDSDSQTERDASGDSKNEDDVEVIEDDKQDQRPRAVDTVEELDAKMMNVHQPSSSSVVVDLTNDNSKVESTEKMLGALSLDRDLSSVSAYKKLLQSVEKRTSRLKSLDFEIELNEKRRSILQSQTPKNKPLDEIPQELFTPLTKEEEAEVERALSTNRRRVLVAHENSNIEITGETLQCLRPGAWLNDEVINLYLELLKERERREPEKYLKCHFFNTFFYKKLNGRNGYDYRSVKRWTSQRKLKYELIDCDKARYFVDEVKDKSGKDIDVSSWAQEFVEDLPEQENGFDCGMFMIKYADFYSRGLNLCFKQEHMPYFRLRTAKEILKLRAN 1629
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5809880 5831662 - ClCG06G005110.2 Cla06g00479 274671

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00479 1629 MobiDBLite consensus disorder prediction 842 864 - -
Cla06g00479 1629 Pfam Protein of unknown function (DUF3110) 993 1080 IPR021503 -
Cla06g00479 1629 Gene3D Adenoviral Proteinase; Chain A 1429 1550 - -
Cla06g00479 1629 Pfam Ulp1 protease family, C-terminal catalytic domain 1552 1623 IPR003653 GO:0006508|GO:0008234
Cla06g00479 1629 Pfam Ulp1 protease family, C-terminal catalytic domain 1483 1549 IPR003653 GO:0006508|GO:0008234
Cla06g00479 1629 MobiDBLite consensus disorder prediction 910 972 - -
Cla06g00479 1629 Pfam Ribosomal protein L11 methyltransferase (PrmA) 186 259 - -
Cla06g00479 1629 Gene3D Adenoviral Proteinase; Chain A 1551 1627 - -
Cla06g00479 1629 MobiDBLite consensus disorder prediction 1299 1331 - -
Cla06g00479 1629 Gene3D Vaccinia Virus protein VP39 132 291 IPR029063 -
Cla06g00479 1629 SUPERFAMILY Cysteine proteinases 1437 1628 IPR038765 -
Cla06g00479 1629 MobiDBLite consensus disorder prediction 926 961 - -
Cla06g00479 1629 Gene3D - 293 501 - -
Cla06g00479 1629 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 1 498 IPR025799 GO:0016274|GO:0018216
Cla06g00479 1629 MobiDBLite consensus disorder prediction 1299 1316 - -
Cla06g00479 1629 ProSiteProfiles Ubiquitin-like protease family profile. 1468 1599 IPR003653 GO:0006508|GO:0008234
Cla06g00479 1629 CDD AdoMet_MTases 190 298 - -
Cla06g00479 1629 Coils Coil 778 798 - -
Cla06g00479 1629 ProSiteProfiles SAM-dependent methyltransferase PRMT-type domain profile. 144 459 IPR025799 GO:0016274|GO:0018216
Cla06g00479 1629 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 154 465 IPR029063 -
Cla06g00479 1629 PANTHER HISTONE-ARGININE METHYLTRANSFERASE 1.4-RELATED 1 498 - -
Cla06g00479 1629 MobiDBLite consensus disorder prediction 585 605 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00479 K05931 CARM1, PRMT4; type I protein arginine methyltransferase [EC:2.1.1.319] - bhj:120068224 969.918
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00093 Cla-Chr5:896892 Cla06g00479 Cla-Chr6:5809880 6.65E-12 dispersed
Cla06g00479 Cla-Chr6:5809880 Cla06g01076 Cla-Chr6:23366813 4.76E-44 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g304 . Blo12g00018 . . Bpe04g01134 . . . . Cmo17g00313 . . . . . . . . . . . . . . Cla06g00479 Cam06g0514 Cec06g0515 Cco06g0518 Clacu06g0498 Cmu06g0500 Cre06g1271 . . . . . . Chy11g01508 . . . . . . . . . Sed04g1796 . . . . . Car17g00298 Cpe12g00276 . Bhi12g02060 Tan06g2675 Cmetu11g2440 Lac11g0838 Hepe03g0103 . Lcy12g0730 . . . . . . . Lsi09g01429 . . Cme11g02010
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005574 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 5 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g00479 Cla_Chr06 FPKM 3.952261 4.969063 5.072088 5.863084 15.059582 15.1737 16.121841 0.0 0.0 0.0534