Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00491 ATGACAATGGGCGAGCGGAAGACTATTGACTTGGAACAAGGATGGGAGTTTATGCAGAAGGGAATCACAAAGTTGAAGAACATTCTTGAGGGCTTGCCTGAGCCTCAGTTCAGCTCCGAGGACTACATGATGCTTTATACCACCATATACAACATGTGCACACAAAAGCCGCCACATGATTACTCCCAGCAGCTATACGATAAATACCGTGAATCTTTTGAGGAGTATATCACTTCTATGGTCTTACCATCCTTGAGGGAGAAGCATGACGAGTTCATGTTGAGAGAACTGGTCAAAAGGTGGACGAACCATAAAGTCATGGTGAGGTGGCTTTCTCGCTTCTTCCACTATCTTGACCGATACTTCATTGCTCGAAGATCACTTCCACCTCTCAACGAAGTTGGCCTCACATGCTTCCGTGAATTGGTGTACAAAGAGCTAAACAGTAAAGTGAGGGATGCAGTAATTTCATTGATTGATCAAGAACGTGAAGGAGAGCAGATTGACAGAGCTCTACTGAAGAATGTATTAGATATATTTGTGGAAATTGGGATGGGGCAAATGGATTACTATGAAAATGACTTTGAAGCTGCCATGCTTAAAGATACTGCTGCTTATTACTCTAGGAAGGCTTCCAATTGGATCCTAGAAGATTCTTGTCCCGATTATATGCTAAAAGCAGAGGAGTGCTTGAAACGAGAAAAGGATAGAGTTTCTCACTATTTGCACTCTAGTAGCGAGCCAAAGTTATTAGAGAAAGTTCAACATGAACTGTTATCTGTGTATGCTACTCAACTGCTGGAAAAAGAGCATTCAGGATGCCATGCATTGCTTAGAGATGACAAGGTGGAAGATTTGTCAAGGATGTTCCGCCTCTTCTCCAAAATACCCAAGGGATTGGACCCAGTTTCCAACATATTTAAGCAGCATGTCACTGCTGAAGGAACAGCATTGGTCAAACAGGCAGAAGATGCTGCAAGTAACAAGAAGGCCGAGAAAAAGGACATAGTTGGTCTGCAGGAACAGGTTTTTGTAAGAAAAGTGATTGAGCTTCACGACAAGTACTTGGCTTACGTGAATGATTGTTTCCAAAACCACACACTTTTTCACAAGGCTCTCAAGGAAGCTTTTGAAGTCTTTTGCAATAAGGGTGTTGCTGGAAGTTCTAGTGCAGAATTACTTGCTACCTTTTGTGATAACATCCTTAAGAAAGGTGGGAGCGAGAAGTTGAGTGATGAAGCAATTGAGGAGACACTTGAGAAGGTCGTGAAGTTGCTGGCATACATCTGCGACAAAGATCTGTTTGCTGAATTCTATAGAAAAAAACTTGCCCGAAGGCTTCTCTTTGACAAGAGTGCCAACGATGACCATGAGAGAAGTATATTGACCAAATTGAAGCAACAATGTGGTGGCCAGTTCACCTCTAAGATGGAGGGGATGGTCACTGATTTGACTTTGGCAAGGGAGAACCAAACTAGTTTCGAGGAGTATCTGAGCAATAATCCACAAGCTAGTCCTGGAATCGACTTGACTGTCACTGTTTTGACTACTGGCTTTTGGCCAAGCTACAAGTCTTTTGACCTCAACCTGCCGGCAGAGATGGTAAAGTGTGTTGAAGTTTTCAGAGAGTTCTATCAAACAAAAACAAAGCATAGAAAACTTACATGGATTTACTCATTGGGTACCTGTAACATCAGCGGAAAATTTGAACCGAAAACGATGGAGCTGATTGTAACAACTTATCAGGCTTCTGCCCTGCTGCTATTCAATTCCTCAGATAGATTAAGTTATTCCGAGATCATGACACAATTAAATTTGAGTGACGATGATGTTGTTAGACTGCTCCACTCATTGTCATGTGCCAAGTATAAAATTCTTAATAAGGAGCCGAACACGAAAACCATCTCTCCGAATGATCATTTTGAGTTCAATGCAAAATTCTCCGACAAAATGAGGAGAATAAAGATCCCTCTTCCGCCTGTGGATGAGAAAAAGAAAGTCATTGAAGATGTTGACAAGGATCGAAGGTATGCTATTGATGCCTCAATCGTGCGTATCATGAAGAGTCGGAAAGTTCTGGGTCATCAGCAGCTAGTGATGGAGTGCGTCGAGCAATTGGGTCGTATGTTCAAGCCCGACTTCAAAGCGATAAAGAAGAGAATCGAAGATCTGATCACTCGGGACTATTTAGAGAGAGACAAAGACAACCCCCACTTGTTTAGCATGAAAGGCTCGTGGTGTAAGCAGAGCTTGAGCACGAGTATGGTGCTGTCTGCTGTAGCCTCTGTAGTCTGTGTGCCGCTTTTTCATGAAATCGTAAAACCAGGAGCTGATGGAAAGAAGGTTGTACATTTTGCCATCCGAACGAGGCCTTGCATTTCCCGCGAAAACGGACGCCCATCTTTTCAAACCATTGAAGAAAATCTCCGTCGCCATCTTCGAAATTGCAACGACTTGATTTCTTCAATCTCGACTCACTCCATAGCCCTAAAGCTTGGATTCTTAAACTATACTGTCACCGTCAACCATCTCATCAATTGCTATGTCAGATTCCGCAGTGTTGCAACCGCACACCAACTGTTCGACGAAATGCCCAACCCAAATGTTGTTTCATGGACCTCACTCATGGCTGGTTACATCGACAATGGTCGGCCGAATACCGCTCTTTTATTGTTCAGGGCAATGTCGAGAAGTCCGGTTGTTCCCAACGACTTCACTTTTGCAACTGCGATTAAGGCCTGTTCAATCATTTCGAATTTAAGACATGGTGAAAAGTTCCATGCCTATGTTGAGATTTTTGGTTATGGAGGTAATGTTGTAGTTTGTTCTTCTCTTATTGATATGTATGGGAAATGTAATGATGTTGTTAGAGCTAGGAATGTCTTTAATTCCATGTCTTGTAAGAATATTGTTTCTTGGACTTCAATGATTGCTGCTTATGCTCAGAATGCTCACGGAAACGATGCATTAACATTATTTAGGGAATTCAGTAGTTTGAGTTCTGAACATCCAAATTCTTACATGCTAGCTAGTGTGATTAGTGCTTGTGCAAGCTTGGGCAGGCTGGTTTCCGGAAAAGTCGTGCACGGTGCAGCGATTCGTCTTGGCTGTGATTCAAGTGATGTTGTTGCAAGTGTGTTAGTTGATATGTATGCTAAATGTGGGAGTCTTGAGTATTCTGGTAAGGTTTTTAACAAAATTTCAAACCCTTCTGTTATTCCTTATACTTCAATGATTGTGAGCACAGCAAAGTATGGATTTGGGAGAAAGTCTCTTCAACTCTTTGAGAAAATGGTGAGAAAAGGATTGAAACCTAATCATATCACTTTTGTTGGAGTCTTGCATGCTTGTAGCCATTCAGGGCTCCCTAATGAGGGTCTTGATTATTTGACATCCATGCCTGAGAAATATGGGATAATGCCGGAGACTAAGCATTATACGTGTGTGGTTGACATGCTAGCTCGAGCCGGGCAGCTAGATAAAGCCTACCAACTAGCGAAATCGATGGAGGTAGCTTCTGATGACAAGGCATTGTTGTGGGGAGCATTGCTTTCAGCTAGTAGGTGTCATGGCAGGGTAGATATTGCAGCTGAAGCTTGTCAGCGACTCGTGAATTCCAATAGACAAGTTGCTGGCGCATACGTCACTTTGTCGAACGCCTATGCATCTGCTGGGGATATGGAGAAGGCTCACAGACTCCGAGTTGAGATGAAACATACTGGAGTTCACAAAGAACCAGGTTGCAGTTGGATCGAGATAAAAGATTTGAGTTACATTTTCTATGCTGGGGATATAACGTCGTGCCCACGAGGCGATGAAGTGTTATGTTTAATGAGAGAGTTGGACCGGAAAATGAAGGATCGGGGTTATGTAAGAGGAAGCAAAGGGTTGGTGTTTGTTGATATAGAAGAGGAGGCAGAGGAAGAAAAAGTATGGTTGCACAGTGAGAGATTGGCATTAGGATTTGGTTTGATTAGCATTCCAAAAGGACTCACTATAAGAATAATGAAGAACTTGAGAATGTGCAGTGATTGTCATGAGGCTTTCAAGCTTATAAGTGAGATTGTGGAGAGAGAGTTTGTAGTTAGAGACATCAATAGATTTCATCATTTCAAAAGTGGTTGTTGTACTTGTAATGGTTTCTGGTAA 4149 42.4 MTMGERKTIDLEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTTIYNMCTQKPPHDYSQQLYDKYRESFEEYITSMVLPSLREKHDEFMLRELVKRWTNHKVMVRWLSRFFHYLDRYFIARRSLPPLNEVGLTCFRELVYKELNSKVRDAVISLIDQEREGEQIDRALLKNVLDIFVEIGMGQMDYYENDFEAAMLKDTAAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVSHYLHSSSEPKLLEKVQHELLSVYATQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPKGLDPVSNIFKQHVTAEGTALVKQAEDAASNKKAEKKDIVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKALKEAFEVFCNKGVAGSSSAELLATFCDNILKKGGSEKLSDEAIEETLEKVVKLLAYICDKDLFAEFYRKKLARRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNPQASPGIDLTVTVLTTGFWPSYKSFDLNLPAEMVKCVEVFREFYQTKTKHRKLTWIYSLGTCNISGKFEPKTMELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPNDHFEFNAKFSDKMRRIKIPLPPVDEKKKVIEDVDKDRRYAIDASIVRIMKSRKVLGHQQLVMECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKDNPHLFSMKGSWCKQSLSTSMVLSAVASVVCVPLFHEIVKPGADGKKVVHFAIRTRPCISRENGRPSFQTIEENLRRHLRNCNDLISSISTHSIALKLGFLNYTVTVNHLINCYVRFRSVATAHQLFDEMPNPNVVSWTSLMAGYIDNGRPNTALLLFRAMSRSPVVPNDFTFATAIKACSIISNLRHGEKFHAYVEIFGYGGNVVVCSSLIDMYGKCNDVVRARNVFNSMSCKNIVSWTSMIAAYAQNAHGNDALTLFREFSSLSSEHPNSYMLASVISACASLGRLVSGKVVHGAAIRLGCDSSDVVASVLVDMYAKCGSLEYSGKVFNKISNPSVIPYTSMIVSTAKYGFGRKSLQLFEKMVRKGLKPNHITFVGVLHACSHSGLPNEGLDYLTSMPEKYGIMPETKHYTCVVDMLARAGQLDKAYQLAKSMEVASDDKALLWGALLSASRCHGRVDIAAEACQRLVNSNRQVAGAYVTLSNAYASAGDMEKAHRLRVEMKHTGVHKEPGCSWIEIKDLSYIFYAGDITSCPRGDEVLCLMRELDRKMKDRGYVRGSKGLVFVDIEEEAEEEKVWLHSERLALGFGLISIPKGLTIRIMKNLRMCSDCHEAFKLISEIVEREFVVRDINRFHHFKSGCCTCNGFW 1382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5950469 5964365 + ClCG06G005250.2 Cla06g00491 274683

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00491 1382 Gene3D Cullin; Chain C, Domain 2 507 660 - -
Cla06g00491 1382 Gene3D Cullin Repeats 267 389 - -
Cla06g00491 1382 Pfam PPR repeat family 867 914 IPR002885 -
Cla06g00491 1382 SUPERFAMILY Cullin homology domain 388 657 IPR036317 -
Cla06g00491 1382 Pfam Cullin protein neddylation domain 674 736 IPR019559 -
Cla06g00491 1382 PANTHER CULLIN 3B 3 741 - -
Cla06g00491 1382 Gene3D Cullin Repeats 4 141 - -
Cla06g00491 1382 Gene3D Tetratricopeptide repeat domain 1039 1284 IPR011990 GO:0005515
Cla06g00491 1382 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 868 902 IPR002885 -
Cla06g00491 1382 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 938 972 IPR002885 -
Cla06g00491 1382 Pfam E motif 1191 1252 IPR046848 -
Cla06g00491 1382 Coils Coil 322 342 - -
Cla06g00491 1382 SUPERFAMILY Winged helix DNA-binding domain 659 740 IPR036390 -
Cla06g00491 1382 TIGRFAM PPR: pentatricopeptide repeat domain 1075 1106 IPR002885 -
Cla06g00491 1382 TIGRFAM PPR: pentatricopeptide repeat domain 940 971 IPR002885 -
Cla06g00491 1382 TIGRFAM PPR: pentatricopeptide repeat domain 839 864 IPR002885 -
Cla06g00491 1382 TIGRFAM PPR: pentatricopeptide repeat domain 870 903 IPR002885 -
Cla06g00491 1382 Gene3D Tetratricopeptide repeat domain 807 923 IPR011990 GO:0005515
Cla06g00491 1382 PANTHER CULLIN 3 741 IPR045093 -
Cla06g00491 1382 SMART cul_2 420 569 IPR016158 -
Cla06g00491 1382 Pfam DYW family of nucleic acid deaminases 1296 1382 IPR032867 GO:0008270
Cla06g00491 1382 SUPERFAMILY Cullin repeat-like 11 384 IPR016159 -
Cla06g00491 1382 ProSiteProfiles Cullin family profile. 389 619 IPR016158 -
Cla06g00491 1382 SMART Cullin_Nedd8_2 671 738 IPR019559 -
Cla06g00491 1382 SUPERFAMILY TPR-like 811 1232 IPR011990 GO:0005515
Cla06g00491 1382 Gene3D Tetratricopeptide repeat domain 924 1000 IPR011990 GO:0005515
Cla06g00491 1382 Pfam PPR repeat 1075 1103 IPR002885 -
Cla06g00491 1382 Pfam PPR repeat 971 996 IPR002885 -
Cla06g00491 1382 Pfam PPR repeat 1145 1170 IPR002885 -
Cla06g00491 1382 Pfam PPR repeat 940 970 IPR002885 -
Cla06g00491 1382 Pfam PPR repeat 839 865 IPR002885 -
Cla06g00491 1382 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1071 1105 IPR002885 -
Cla06g00491 1382 Pfam Cullin family 24 647 IPR001373 GO:0006511|GO:0031625
Cla06g00491 1382 Gene3D Cullin Repeats 142 261 - -
Cla06g00491 1382 Gene3D - 661 740 IPR036388 -
Cla06g00491 1382 Gene3D Cullin Repeats 390 503 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00491 K03347 CUL1, CDC53; cullin 1 - csv:101216323 1480.69
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g00491 Cla-Chr6:5950469 Cla07g01438 Cla-Chr7:31614970 5.73E-33 dispersed
Cla09g02133 Cla-Chr9:38930760 Cla06g00491 Cla-Chr6:5950469 1.01E-11 transposed
Cla10g01429 Cla-Chr10:29348499 Cla06g00491 Cla-Chr6:5950469 3.43E-133 transposed
Cla05g00638 Cla-Chr5:5944966 Cla06g00491 Cla-Chr6:5950469 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g329 . Blo12g00020 . . Bpe04g01129 . . . Cmo08g01191 . . . . . . . . . . . . . . . Cla06g00491 . . . . . . . . . Cone4ag0156 . . Chy11g01486 . . . . . . . . . . . . Cma08g01218 . Car08g01091 . . Cpe17g00013 Bhi12g02081 . . . Hepe03g0114 . Lcy13g0186 . . . . . . . Lsi09g01416 . . Cme11g01993
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001518 2 4 1 2 2 2 3 2 2 2 2 2 2 2 2 3 2 3 3 2 2 2 2 2 3 2 2 7 3 2 72
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g00491 Cla_Chr06 FPKM 1.403587 2.691867 3.411686 4.165345 1.886261 2.174685 1.020692 1.733884 2.347703 2.992129