Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00492 ATGATTGTTGGAACTAGGGTTTTGGGTTCACATTTAATGGTGGGCTCTGTTGAGCCGATGATAATGGGGGATTGCATTGACTTGGAAGAAGGCGAAGCTTCTTGCTATCACAAGGATAATGGCGGTGATATTGACCCTGACATTACTCTCTCTTACATTGACGAGAAAATCGAGCGTTTTCTTGGTCACTTCCAAAAAGACTTTGAAGGTGGAGTTTCAGCTGAAAAGTTGGGGGCAAAGTTTGGTGGTTATGGCTCATTTTTGCCTACATATGAACGCCCTTCTTCGGTTGTGCCGCACAATATAAATCAACAAAGAGACTGCAATGCAACACCAACTCCAGTTAATGTGCCCTTGGAGGGTTCTTCTCAGAATCCAAAAGCTCCACCACCCAAGAGACCAGAAGCTTTTGTCTGTAATACTATTTCCTCTCATAATACAAGGGAAACTTCTGGCAGTATCTCTGGGAGAGTAGATTCATGCTTGCCGGTTACTAAAGTTACTAATAGTTGCCCTTCTAAAGGTGAAGCTTCAGGCAGATCAGGCAGTCCAATGAATAGTGGATTGCTTAAATTTCGAATCAAAGTTGGTTCTGACAGTACTGGATTGAAAAATGCAGCAATATACAGTGGCCTAGGACTTGATGACTCACCATTGTCATCATCCGAAAACAGCTCTGACTTAAGTGAAGGGATGCTGCCTATATCTCAAAGCGCACCTGATGAGTCTCCGTCTAAGATAATTCAGGCAATGACTTCTTTCCCAGTGCCTCGTGGAGCATTGATATCACCTCTTCATGATAGCCTACTTGGGTTGTCAAGAAAGGAAAAACGGTTACCATTACCCAAACCTATGCTTTCTCTTGAGAATAAAAAGGACGGCTTGGCCAAGCTAGCCAATGAGACGACTTTAAAGCAAGATGACAGTACATTGGTTAAGAAGAAGAAGAAAAAGGAGGTGGTGCATAGAGAAAGGCAGGTCAATCGTAAGAATGAAGTTTATGCTTCTCGTGGGGAGGAGAAGACTACTCTAACACTTGTAGATCAAAAATTAGACAATGAGGCTTTTGAAAGCAAGGGTTTCCTGTCTAATGAGTTGCAATGGAAACCTGGTTCCGAGGGTATGAAGTCCAGTGCTCACTTAGACCCACAAAAGAAGAAGCTTTCTCGTAAAGCTACACTACCTGAAACAGTTAAAGACAAAGCATCAATCAAGAAAGAAAAGCCTGAAATTGTTGTAGAGAAGAAATTGAAAGTGGTGCAGACTACTGGTGGGAAAATAGCTGGTTCATTTGAGGAAGGCTTCAAGATTAAAAGTGAAGCATCAAGAGGTAGAAAGGACACTGATTCTGACACTCCTGAATCTGAAAATAGAAGGCACAGGTTAAAGCTTCACAGCAATGAGAAAGTAGGAGCAAACAATGTGGATTCTTTTAACAGCTTGGGGTTAGATGAAACCCGCATAAGTAAGGATGCAATTGAGAGGGCCTCTGGTGACTGGCGGAAGGTTAAAGGCCTAGATGACAGTGGAATCAGAATGTCCAAATCCTCAAATGTGGTTGAACCGGCAGCAGTGGCTCCTATGGATGAATGGGTATGCTGTGACATTTGCCAGCAATGGCGCCTTCTGCCCTTTGGGACAAAACCAGAACAACTTCCTGATAAGTGGTTGTGTAGCATGCTAGATTGGCTGCCTGGGATGAACCGGTGTGACATTAGTGAGCAGGAGACAACAGAAAAGCTTTATGCTTTGTACCAGCTACCATTGCCTGAGAGTGGAAATGCTTTGCAGAACCATGCCAATGGAGTAATATCAGCTGATACTTCAAATCATGGAAAAAAGAGTGAAACTTTCAAAGAAATACAAAATCCAGTTAGCAGAATTGGCCAGACTCATGTCAAGAGTTCTCTGAAAGACCAGCACTTGGAGTCTAGGAAAAATAGAAGTCTTAATGGCTTGAGTAATCCTCCAAATAAATTGAGAAATTCAGTGGATCAAACTTCTACTGACCTGAACAACTTGGCAGAGGGTAAGAACAGAGGTAAACTGAAAGAAAAATCCACTGAGCGAGCTGCAGTTAATTCCGACCAATTGAAAAGGAAGATCAAGAGACCTGAAGACATGCGCTCTGTTGATAATCATCAAAACTTCAATGTGGGCCTTGGAAAGTTGGGTTGTAGTTCAAATTCTGGTTTGACAAACATGGAAGGTGGGGAAGGTATGCTGAAGCAGGGTGACATTAGCTTAAAGAACAACAAATTGAACACGGAAAATAAAATGCAAATTTCATTGAAGAAACGGAGCGGAACAGCTGAGATCTCCTCTGTTGTTAGGTCCTCTGTTAATCAACTAAGTGGTAGAAGTGCCTGCACAAAGAAAAGGAAAGTGAATGATTGGCAAGATGATCAAAATTCTCCTAACAGTGGACTCCATGAACCCATGCTTATGAAGGAAGAGAATTGTGAAAGGTTGAAGAAGAAGAAGAAGCTTGATGTGTCCAATGATTTCATTGATGGCATGGAAGAAATCAACAAGGATAGGGAACCAAAAATGCAAAATAAGAAGATTATTGCTAAACAAACATCAGTTAGTAAGGAGTTACCGAAGAGAAATTTAATTGCTCAACAAGTTTCAGTGGCAGCTAACTCTAGCTCTTCAAATGTTTCTCAATCTCATTTACCAAAAGCCAAATTTGGAGTGAAAGTATCTCCTGCTGAATCAGTTTCATCATCTCCTATGAGGTCATCCGGCCTCGACCAATTTGGAGGAGAAAAAGAGGAGATTACCTCTAATCTTCTCTCTGACTCTCATGCTCTCAACACCAACAGCAAGAAAATCAAAGCTTCACCTGCAGTTCAACACCATTTTGTTACTGCTGATGCACATACTGTTAAGCAGTCTAGGTTGTGCAATAATGACAACATGGAGCCCAGCCACAAGAAACGCAAGAAAGAGAAGATTCATGTTGGTGCTGAAGGATTGGAAACCCCTCAAAATCTCAAGGGTCATGATGCTGAAGACCCGAGATCAGGTGCTCTATTTCAATCAAATAAAGCAGTCAGACTTCAGACAAAGCGAAATTGGGATTTTGAAGCAGGAGATAAAGGTGGTCTGAGAACAGTAGAAAAGAGGGACGGAATATCAAAATGCTCTTCTGGAGGTGAACGCAAAGAAGAACCATCCCGCCCTGGTGGTGATCCTTTACGAGTGTCTATTAGGGCGGGAGATTCTCGTCAGCTTATTGCCGATGCCCCCAGTGATGATGTGGTAGAGTCAAAGAGAACACCTGATCTACAGGGATCTAGAGATGTTAATGCTTCAAATCTCAACAGAACGAAGACCTCAAATCAGACTGCTTGTGATACATTGAAAGAAGCCAAGAAACTCAGAGATGAAGCAGACCACTTGAAGAATTCTGGATTCATTTTTGAAAGTAATGAGCTTTACTTCCAATCTGCTCTGAAGTATCTACATGGAGCATTCCTTCTAGAGACTCTTAATAATACGAGTGGCAAGCCTGGTGATACCTCCCCCATACGATTCTATAGCATGACAGCTGAATTGTGCGAGTCCTGTGCCATGGAATATGAAAGTCGCCGAGAAATGGCTGCAGCATCTTTGGCTTATAAATGTATCGAAGTAGCTTACTTGAGGATAGTTTACCATAAACATTCAAGCATCAGTGGGGATCGCCTTGAGATGCAATCGTTGTTTCGGACAATTGTGCAAGGCGAGTCTCCATCTTCTTCTGCATCAGATGTCGATAACTTAAGCAATCATGGAGCTATGGATAAGGCTACTTTTGACAAAGGTAGTTCCCATGGTGCTCGAAATCACATCTGGAATGCTGGAACCTGCACGAGTTTTGGTCGGGTCCTCAATTTCGTGCGTGATATGAATTCAGCCATGGAGGCCTCGAAGAATTCACGAAATGCATTTGTGGCAGCTAGTTCATGTGCTAGTGAAGGAAAGCATGTGGACTATGTTGCATCAGTTAAAAAAGTGATTGATTTCAGCTTCCAAGATGTAGGGGAACTCGTACAGTTGGTTCGAGTTGCTACGCAGACGATATCTCACTCGGGTTTTTGCAGTGGTAGAGATTAG 4104 42.47 MIVGTRVLGSHLMVGSVEPMIMGDCIDLEEGEASCYHKDNGGDIDPDITLSYIDEKIERFLGHFQKDFEGGVSAEKLGAKFGGYGSFLPTYERPSSVVPHNINQQRDCNATPTPVNVPLEGSSQNPKAPPPKRPEAFVCNTISSHNTRETSGSISGRVDSCLPVTKVTNSCPSKGEASGRSGSPMNSGLLKFRIKVGSDSTGLKNAAIYSGLGLDDSPLSSSENSSDLSEGMLPISQSAPDESPSKIIQAMTSFPVPRGALISPLHDSLLGLSRKEKRLPLPKPMLSLENKKDGLAKLANETTLKQDDSTLVKKKKKKEVVHRERQVNRKNEVYASRGEEKTTLTLVDQKLDNEAFESKGFLSNELQWKPGSEGMKSSAHLDPQKKKLSRKATLPETVKDKASIKKEKPEIVVEKKLKVVQTTGGKIAGSFEEGFKIKSEASRGRKDTDSDTPESENRRHRLKLHSNEKVGANNVDSFNSLGLDETRISKDAIERASGDWRKVKGLDDSGIRMSKSSNVVEPAAVAPMDEWVCCDICQQWRLLPFGTKPEQLPDKWLCSMLDWLPGMNRCDISEQETTEKLYALYQLPLPESGNALQNHANGVISADTSNHGKKSETFKEIQNPVSRIGQTHVKSSLKDQHLESRKNRSLNGLSNPPNKLRNSVDQTSTDLNNLAEGKNRGKLKEKSTERAAVNSDQLKRKIKRPEDMRSVDNHQNFNVGLGKLGCSSNSGLTNMEGGEGMLKQGDISLKNNKLNTENKMQISLKKRSGTAEISSVVRSSVNQLSGRSACTKKRKVNDWQDDQNSPNSGLHEPMLMKEENCERLKKKKKLDVSNDFIDGMEEINKDREPKMQNKKIIAKQTSVSKELPKRNLIAQQVSVAANSSSSNVSQSHLPKAKFGVKVSPAESVSSSPMRSSGLDQFGGEKEEITSNLLSDSHALNTNSKKIKASPAVQHHFVTADAHTVKQSRLCNNDNMEPSHKKRKKEKIHVGAEGLETPQNLKGHDAEDPRSGALFQSNKAVRLQTKRNWDFEAGDKGGLRTVEKRDGISKCSSGGERKEEPSRPGGDPLRVSIRAGDSRQLIADAPSDDVVESKRTPDLQGSRDVNASNLNRTKTSNQTACDTLKEAKKLRDEADHLKNSGFIFESNELYFQSALKYLHGAFLLETLNNTSGKPGDTSPIRFYSMTAELCESCAMEYESRREMAAASLAYKCIEVAYLRIVYHKHSSISGDRLEMQSLFRTIVQGESPSSSASDVDNLSNHGAMDKATFDKGSSHGARNHIWNAGTCTSFGRVLNFVRDMNSAMEASKNSRNAFVAASSCASEGKHVDYVASVKKVIDFSFQDVGELVQLVRVATQTISHSGFCSGRD 1367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5964823 5973092 - ClCG06G005270.2 Cla06g00492 274684

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00492 1367 MobiDBLite consensus disorder prediction 103 133 - -
Cla06g00492 1367 MobiDBLite consensus disorder prediction 438 464 - -
Cla06g00492 1367 MobiDBLite consensus disorder prediction 103 123 - -
Cla06g00492 1367 MobiDBLite consensus disorder prediction 214 243 - -
Cla06g00492 1367 MobiDBLite consensus disorder prediction 647 675 - -
Cla06g00492 1367 MobiDBLite consensus disorder prediction 787 812 - -
Cla06g00492 1367 MobiDBLite consensus disorder prediction 379 393 - -
Cla06g00492 1367 Pfam CW-type Zinc Finger 530 576 IPR011124 GO:0008270
Cla06g00492 1367 ProSiteProfiles Zinc finger CW-type profile. 525 578 IPR011124 GO:0008270
Cla06g00492 1367 Gene3D - 516 580 - -
Cla06g00492 1367 MobiDBLite consensus disorder prediction 1085 1115 - -
Cla06g00492 1367 MobiDBLite consensus disorder prediction 608 698 - -
Cla06g00492 1367 PANTHER CW-TYPE ZINC FINGER 375 1361 - -
Cla06g00492 1367 PANTHER CW-TYPE ZINC FINGER 22 371 - -
Cla06g00492 1367 MobiDBLite consensus disorder prediction 215 243 - -
Cla06g00492 1367 MobiDBLite consensus disorder prediction 677 698 - -
Cla06g00492 1367 MobiDBLite consensus disorder prediction 904 924 - -
Cla06g00492 1367 MobiDBLite consensus disorder prediction 1039 1069 - -
Cla06g00492 1367 MobiDBLite consensus disorder prediction 367 393 - -
Cla06g00492 1367 MobiDBLite consensus disorder prediction 967 1017 - -
Cla06g00492 1367 MobiDBLite consensus disorder prediction 1099 1115 - -
Cla06g00492 1367 MobiDBLite consensus disorder prediction 1039 1064 - -
Cla06g00492 1367 PANTHER CW-TYPE ZINC-FINGER PROTEIN 375 1361 - -
Cla06g00492 1367 PANTHER CW-TYPE ZINC-FINGER PROTEIN 22 371 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00492 - - - bhj:120067193 2327.36
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g00492 Cla-Chr6:5964823 Cla09g00576 Cla-Chr9:5364757 1.56E-27 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g330 . . . . . . . Bma05g01045 Cmo08g01190 Cmo17g00302 . . . . . . . . . . . . . . Cla06g00492 Cam06g0529 Cec06g0529 Cco06g0533 Clacu06g0513 Cmu06g0515 Cre06g1286 . . Cone7ag0159 Cone4ag0157 . . Chy11g01485 . . . . . . . . . Sed09g1215 . . Cma08g01217 Cma17g00314 Car08g01090 Car17g00288 Cpe12g00266 Cpe17g00012 Bhi12g02083 Tan06g0860 Cmetu01g0223 Lac12g2393 Hepe03g0115 . Lcy13g0188 . . . . . . . Lsi09g01415 . . Cme11g01992
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003760 1 2 1 2 1 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 2 3 1 1 2 3 2 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g00492 Cla_Chr06 FPKM 1.156912 1.416876 1.90381 1.502051 3.640974 2.299952 4.244244 4.27986 4.161614 5.791653