Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00496 ATGGAGGGTTGCTTTCTTGTTTCATCGCCTGCTGCTAATGCAGAATCCAGTCCTCACCTCAAGTCTGAGAGCTTGGTGCTTCTTGGGGATGCATTATTTCGAGAAAGGGAGTATCGAAGAGCAATTCATACTTACAAGCAAGCCTTGCAACACTATAAGATTCTTCCTAAGCAAAATTCAACTACTACTAGAAGTTCTTTGCAGTCAAACAGGTCCTCTTCTCCAAACTCCTTTAACATATCGGCCATTAATGAAAATGAGGTGAAGTTTAAAATTGCATCGTGTTATTGCGCATTAAGTGACAACAGAGCTGCCCTTGTAGAGATGGAGGGAATTCCAAGCAAGGCAAGAAATTTGCAAATGAATCTTTTGCTGGGAAAGCTTTACAGATATGCCAGACATAACCGTGCTGCTATTGCATATTACAAAGAGTGCTTAAGACATTGCCCTTATGTGTTTGAAGCTATTATAGCTTTAGCAGAACTTGGCGTTACTGCCAAAGATATCATTTCGTTGTTTCCTCAGCATGTCGAGTTGACGAGTTCTACAGTTGGGTTTCAGAAGCTGCCGGCCACTATGCTTAAGATAGGTTTGATGAGGTGGCAAAACCTGGCATTCCTGTCTCTTGGTTTTGAGTCTCTTATTACAGCAAACAGAAGTGGCAAAAGTCCTTTTGATCACTTCGACTCAAACCGCTGGCTGCCGCGCTATGTTGAGGCCCAGTGCTGCATTGCTTCAAATGATTACAAAGGTGGTTTGGAGCTGTTTTTGGATTTGTTGCAACGTTTTCCAAATAATATTCACCTGTTACTTGAAATTGCAAAGGCACGATCAATTGATCCATATCTTGTAACATATATGGATGAATATGCAATGCTTCTGAAGATAAAGTCTGATTATTCAATGCTTAACAAGTTAGTCCATGACTTGTTAAATATTGATCCTACAAGACCAGAAGTTTTTGTGGCTTTGTCTGTATTGTGGGAAACGAAAGATGAGAGGGGAGCCTTGGCTTATGCTGAAAAGGTTCGTTATGAAAATAGAGCTTTGGGATTTGTTTTATTTTCTATATTTACTAACATTCATATTGCTAATAATCAGAGCATCCGAATTGATGAAAGGCATATAACAGGTTTCATCATGAAGGGAAACCTGTTATTAGCCATGAAGCAGCCAGAAGCAGCCGTTAGTGCTTTCAGGAATGCTCAAGAATTGAGACCTGATATTCGTTCATATCAAGGCCTGGTCCATTCTTATCTGGCTCTGTCTAAAATGAAAGAGGCATTATACGCTGCCCGGGAGGCAATGAAAGCGATGCCTCAATCTGCAAAGGCTCTAAAATTAGTTGGAGATGTACATGCTAGTAACTCAGGTGGTAGAGAGAAGGCCAAGAAGTTTTATGAATCAGCCCTTAGGCTGGAACCTGGTTACCTTGGAGCGGCATTAGCTTTGGCAGAGCTCCATGTAATTGAAGGTCGAAACGGGGATGCTGTATCCTTACTGGAGAGGTACCTTAAGGACTGGGCTGATGATTCTCTTCACGTAAAACTAGCTCAAGTATTTGCCGCCACAAATATGCTGCAAGAGGCTTTATCTCACTATCAAGCTGCATTAAGGCACATTAGCATGATGTACTTCTGTTTGGACCGAGGTCTGAGACCAAACTTCTTCTCAGTAGGATTAGATGGGGCGATTCGAGTGAGATCCAACTTTTATTCATTCGTGGGATTTGGGCTGTCTGGGGGACCACATTCGCTCCTCTCTTCTCAAGAATCCATACATCCCTTGTTGATACACCACCACCATTGGAGGCCATCCTCCACTCCACCACCCACCACCAAGAATTACAAAGCATCAGTTTTCCCATGGGTTTTTGCACAATTGTTCTTTCATGCTTTTGGAGTGGTATTCACTGCCAATTGCCTTTTTTCATATGGCATGATGAATCCCCAGAACGAAGCTGCCAAGAAAGGGCTAGAGCGCTTAGAAAAACAAATGAAGGGAGTGGATCCTGATGCACCTGAAGATGATGAAGACAATGAGGTCGATGATGCCGATGGAGACCAAGAAGAAGCTGAACTCTTATGA 2088 42.48 MEGCFLVSSPAANAESSPHLKSESLVLLGDALFREREYRRAIHTYKQALQHYKILPKQNSTTTRSSLQSNRSSSPNSFNISAINENEVKFKIASCYCALSDNRAALVEMEGIPSKARNLQMNLLLGKLYRYARHNRAAIAYYKECLRHCPYVFEAIIALAELGVTAKDIISLFPQHVELTSSTVGFQKLPATMLKIGLMRWQNLAFLSLGFESLITANRSGKSPFDHFDSNRWLPRYVEAQCCIASNDYKGGLELFLDLLQRFPNNIHLLLEIAKARSIDPYLVTYMDEYAMLLKIKSDYSMLNKLVHDLLNIDPTRPEVFVALSVLWETKDERGALAYAEKVRYENRALGFVLFSIFTNIHIANNQSIRIDERHITGFIMKGNLLLAMKQPEAAVSAFRNAQELRPDIRSYQGLVHSYLALSKMKEALYAAREAMKAMPQSAKALKLVGDVHASNSGGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVFAATNMLQEALSHYQAALRHISMMYFCLDRGLRPNFFSVGLDGAIRVRSNFYSFVGFGLSGGPHSLLSSQESIHPLLIHHHHWRPSSTPPPTTKNYKASVFPWVFAQLFFHAFGVVFTANCLFSYGMMNPQNEAAKKGLERLEKQMKGVDPDAPEDDEDNEVDDADGDQEEAELL 695
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6016666 6024108 + ClCG06G005310.2 Cla06g00496 274688

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00496 695 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 7 3 342 - -
Cla06g00496 695 SMART tpr_5 233 266 IPR019734 GO:0005515
Cla06g00496 695 SMART tpr_5 22 55 IPR019734 GO:0005515
Cla06g00496 695 SMART tpr_5 443 477 IPR019734 GO:0005515
Cla06g00496 695 SMART tpr_5 511 544 IPR019734 GO:0005515
Cla06g00496 695 SMART tpr_5 119 152 IPR019734 GO:0005515
Cla06g00496 695 SMART tpr_5 376 409 IPR019734 GO:0005515
Cla06g00496 695 SUPERFAMILY TPR-like 22 162 IPR011990 GO:0005515
Cla06g00496 695 SUPERFAMILY TPR-like 374 539 IPR011990 GO:0005515
Cla06g00496 695 MobiDBLite consensus disorder prediction 656 695 - -
Cla06g00496 695 Pfam Tetratricopeptide repeat 482 540 - -
Cla06g00496 695 Gene3D Tetratricopeptide repeat domain 1 130 IPR011990 GO:0005515
Cla06g00496 695 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 7 367 539 - -
Cla06g00496 695 Pfam Tetratricopeptide repeat 380 408 IPR019734 GO:0005515
Cla06g00496 695 Gene3D Tetratricopeptide repeat domain 217 542 IPR011990 GO:0005515
Cla06g00496 695 Pfam Tetratricopeptide repeat 24 49 IPR019734 GO:0005515
Cla06g00496 695 PANTHER CELL DIVISION CYCLE 16,23,27 3 342 - -
Cla06g00496 695 PANTHER CELL DIVISION CYCLE 16,23,27 367 539 - -
Cla06g00496 695 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 7 648 686 - -
Cla06g00496 695 MobiDBLite consensus disorder prediction 672 695 - -
Cla06g00496 695 Pfam Protein of unknown function (DUF2647) 547 599 IPR022546 -
Cla06g00496 695 PANTHER CELL DIVISION CYCLE 16,23,27 648 686 - -
Cla06g00496 695 MobiDBLite consensus disorder prediction 59 78 - -
Cla06g00496 695 MobiDBLite consensus disorder prediction 656 671 - -
Cla06g00496 695 SUPERFAMILY TPR-like 236 409 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00496 K03354 APC7, ANAPC7; anaphase-promoting complex subunit 7 - csv:101215365 826.239
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g00496 Cla-Chr6:6016666 Cla01g01400 Cla-Chr1:28436607 3.74E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g345 . . . . . . . . Cmo08g01185 Cmo17g00301 . . . . . . . . . . . . . . Cla06g00496 Cam06g0533 Cec06g0533 Cco06g0537 Clacu06g0518 Cmu06g0520 Cre06g1290 . . . Cone4ag0164 . . Chy11g01482 . . Blo07g00184 Bda11g00536 . . Bpe13g00652 . Bma06g01514 Sed04g1816 . . Cma08g01212 Cma17g00313 Car08g01084 Car17g00286 . Cpe17g00008 Bhi12g02089 Tan06g2639 Cmetu11g0405 Lac12g2386 Hepe03g0119 . Lcy13g0194 . . . . . . . Lsi09g01409 . . Cme11g01989
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008189 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 2 1 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g00496 Cla_Chr06 FPKM 12.461538 13.373998 5.836959 4.974827 12.06177 10.49577 12.674495 2.74647 2.511235 2.335927