Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00499 ATGGCGAAACCCTCGAAACGACAGGCGTCTTCCGATGAAGCCATGTCCAATGGCTCGAGCTCGTCGGAGGAAGAGGAGCAAACTAACGAGCAGATCAATGAGGAAGAAGACGAGGAGGAGCTCGAAGCGGTCGCTCGCTCGGCAGGCTCTGACGAGGATGAAGCTGCCGACGATTCTGATAACGATGCATCACCTGTCGAAAATGGCGAGGAAGAGGTGAATTTCGAATTTCGGTTCTCAATATCTGTTTTCATTTCTGTTAATTTTACTCGGATCTCGGATGGAAGTAACGACGGCCAAGATGATAAAACCGATATTAGCCGGCGTGAAAAGGCCAGACTAAGAGAAATGCAACAAATGAAGAAGCAGAAGATTCAGGATATGTTAGATGCACAAAATGCTGCTATTGATGCTGATATGAATAACAAGGGGAAGGGACGCTTGAAGTATCTTCTGCAGCAAACTGAGATATTTGCTCATTTTGCTAAAGGTGATCATTCTTCTTCCCAGAAGAAGACGAAGGGAAGGGGTCGCCATGCATCAAAACTAACCGAAGAAGAAGAAGATGAAGAGTACCTTAAAGAGGAAGAAGATGGTCTATCTGGGACTGGGAACACTCGTTTAGTTTCACAACCATCCTGTATCCAAGGGAAAATGAGGGATTATCAACTAGCTGGATTAAATTGGCTCATTCGATTATATGAGAATGGCATAAATGGAATCCTTGCCGATGAGATGGGGCTTGGCAAGACATTACAAACCATCTCCTTGTTGGGCTATCTCCATGAGTACAGAGGCATAACAGGCCCCCATATGGTAGTTGCACCAAAATCTACCCTGGGAAACTGGATGAATGAAATTCGGCGATTTTGCCCTGTCTTGCGTGCTGTAAAGTTTCTTGGAAATCCTGATGAAAGGAGGGATATACGGGAAAATTTACTGGTTGCTGGGAAATTTGATGTCTGTGTTACCAGTTTCGAAATGGCCATTAAGGAGAAGACTTGCTTGCGTCGTTTCAGTTGGCGCTACATTATTATTGATGAAGCTCATCGAATTAAGAATGAGAATTCCCTCCTTTCAAAGACAATGAGGCTTTATAACACCAACTACCGTCTTCTAATCACTGGCACACCGCTTCAGAACAATCTACATGAACTATGGTCTCTCCTCAATTTCCTTTTGCCTGAAATATTTAGTTCAGCTGAGACTTTTGATGAATGGTTTCAAATTTCTGGGGAAAATGATCAGCAGGAGGTGGTTCAGCAACTTCACAAGGTCCTTCGGCCATTTCTTCTTCGGAGGTTGAAATCAGATGTAGAGAAAGGTTTACCGCCAAAAAAGGAAACAATACTCAAAGTAGGCATGTCACAGATGCAAAAACAATACTATCGTGCTTTGCTGCAGAAGGATCTTGAAGTTGTTAATGCTGGTGGTGAGCGTAAACGGCTACTTAATATAGCAATGCAGCTCCGGAAATGCTGTAATCACCCATATTTGTTTCAAGGTGCTGAACCTGGGCCTCCTTACACCACAGGGGACCATCTTATTACTAGTGCTGGTAAAATGGTTCTTTTGGACAAGTTGCTTCCAAAACTGAAAGAGCGTGATTCTAGAGTCCTAATATTTTCGCAGATGACAAGGCTGTTGGACATTCTTGAAGATTATTTAATGTTTCGTGGATACTATTACTGTCGAATTGATGGTAACACTGGTGGTGAAGATCGTGATGCATCCATTGATGCCTTCAACAGGCCAGGAAGTGAAAAATTTGTTTTCTTACTATCAACCAGAGCTGGAGGTCTTGGAATTAATCTTGCTACTGCAGATGTAGTTATTCTTTATGACAGTGACTGGAACCCTCAAGTTGATCTACAAGCACAAGATCGTGCTCACAGGATTGGTCAGAAGAAGGAAGTTCAAGTGTTCCGGTTTTGCACTGAGTATACCATTGAGGAAAAAGTGATAGAAAGGGCTTACAAGAAACTTGCCCTTGATGCTTTGGTGATTCAACAAGGACGTTTAGCAGAGCAGAAAACTGTCAACAAGGATGAGCTACTTCAAATGGTGAGGTTTGGTGCTGAGATGGTTTTCAGTTCCAAAGATAGCACCATCACAGATGAGGACATTGACAGAATCATTGCAAAAGGAGAAGCAGCAACAGCAGAGCTTGATGCAAAGATGAAGAAATTTACAGAAGATGCCATTAAATTTAAAATGGATGAAACTGCTGAATTGTATGATTTTGATGATGAAAAGGACGAGAATAAATTTGACTTCAAGAAAATTGTTAGTGAAAATTGGATTGAACCACCTAAAAGGGAGCGGAAGCGCAATTACTCAGAATCAGAATACTTTAAGCAAACAATGCGGCAGGGTGGTCCAACAAAACCAAAGGAGCCCAGGATACCTCGCATGCCTCAGTTGCATGATTTCCAGTTTTTTAACACACAAAGGTTGAGTGAACTCTATGAAAAAGAAGTGCGTTATCTCATGCAAACACATCAAAAGAATCAGTTGAAAGACACAATAGATGTTGAGGAGCCTGAAGAGGTGGGCGATCCTTTGACTGCTGAGGAGCTGGAAGAGAAGGAGCGACTCTTAGAGGAAGGATTTTCTTCATGGAGTCGCAGAGATTTCAATACATTTATTAGGGCTTGTGAGAAATATGGGCGAAATGATATAAAAAGTATTGCTTCAGAGATGGAAGGAAAAACAGAAGAAGAAGTTGAGAGATATGCGAAGGTCTTTAAGGAGAGATACAAAGAGTTAAATGATTATGATAGAATCATCAAGAACATAGAAAGAGGGGAAGCAAGGATTTCCCGTAAAGACGAAATAATGAAAGCCATTGGCAAGAAACTGGACCGCTACAAAAATCCATGGCTGGAGCTCAAGATCCAGTATGGCCAGAATAAAGGGAAGTTGTATAACGAAGAATGTGATCGGTTCATGATATGCATGGTTCACAAACTTGGTTATGGAAACTGGGACGAACTGAAGGCAGCATTTCGCACATCACCCTTGTTTCGCTTTGATTGGTTTATCAAGTCGCGAACGACGCAAGAACTTGCGAGGAGGTGTGATACCTTAATCCGATTAGTGGAGAAAGAAAACCAGGAACATGACGAAAGGGAGAGACAGGCCCGTAAAGAAAAGAAGCTTGCAAAGAGTATGACGCCGTCAAAACGTTCCTTGGCAAGGCAGACTGAGAGCCCAACTAACCTAAAGAAGCGGAAACAATTATCAATGGACGATTATGTAAACTCCATGATGCGAGTGCGTCAAAACATTGAAAATTTTGCATCATTGGCCACGGGACAGTCATATGAAGAACAAGCTGTTGACAAACTGACGACCGTCTCAGAGACTCGTCTGGTTGCTCTTGAATTGAATCTTCAGCCGAATGCTCGCACTTGGTTATTTTGGTCTCTTTACATGGAGTAG 3444 42.42 MAKPSKRQASSDEAMSNGSSSSEEEEQTNEQINEEEDEEELEAVARSAGSDEDEAADDSDNDASPVENGEEEVNFEFRFSISVFISVNFTRISDGSNDGQDDKTDISRREKARLREMQQMKKQKIQDMLDAQNAAIDADMNNKGKGRLKYLLQQTEIFAHFAKGDHSSSQKKTKGRGRHASKLTEEEEDEEYLKEEEDGLSGTGNTRLVSQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPDERRDIRENLLVAGKFDVCVTSFEMAIKEKTCLRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYRALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLITSAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFRGYYYCRIDGNTGGEDRDASIDAFNRPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEAATAELDAKMKKFTEDAIKFKMDETAELYDFDDEKDENKFDFKKIVSENWIEPPKRERKRNYSESEYFKQTMRQGGPTKPKEPRIPRMPQLHDFQFFNTQRLSELYEKEVRYLMQTHQKNQLKDTIDVEEPEEVGDPLTAEELEEKERLLEEGFSSWSRRDFNTFIRACEKYGRNDIKSIASEMEGKTEEEVERYAKVFKERYKELNDYDRIIKNIERGEARISRKDEIMKAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMICMVHKLGYGNWDELKAAFRTSPLFRFDWFIKSRTTQELARRCDTLIRLVEKENQEHDERERQARKEKKLAKSMTPSKRSLARQTESPTNLKKRKQLSMDDYVNSMMRVRQNIENFASLATGQSYEEQAVDKLTTVSETRLVALELNLQPNARTWLFWSLYME 1147
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6047283 6055366 - ClCG06G005340.2 Cla06g00499 274691

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00499 1147 Gene3D - 440 732 IPR027417 -
Cla06g00499 1147 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 524 675 IPR001650 -
Cla06g00499 1147 Coils Coil 114 134 - -
Cla06g00499 1147 Pfam SLIDE 927 1037 IPR015195 GO:0003677|GO:0005634|GO:0006338
Cla06g00499 1147 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 193 434 IPR027417 -
Cla06g00499 1147 MobiDBLite consensus disorder prediction 1038 1076 - -
Cla06g00499 1147 SUPERFAMILY HAND domain of the nucleosome remodeling ATPase ISWI 782 872 IPR036306 GO:0003677|GO:0006338|GO:0031491
Cla06g00499 1147 MobiDBLite consensus disorder prediction 9 26 - -
Cla06g00499 1147 Coils Coil 1031 1054 - -
Cla06g00499 1147 MobiDBLite consensus disorder prediction 1038 1058 - -
Cla06g00499 1147 CDD SANT 873 917 IPR001005 -
Cla06g00499 1147 Pfam Helicase conserved C-terminal domain 522 634 IPR001650 -
Cla06g00499 1147 Pfam SNF2-related domain 232 499 IPR000330 GO:0005524|GO:0140658
Cla06g00499 1147 SUPERFAMILY Homeodomain-like 873 923 IPR009057 -
Cla06g00499 1147 Gene3D ISWI, HAND domain 771 869 IPR036306 GO:0003677|GO:0006338|GO:0031491
Cla06g00499 1147 SMART sant 870 919 IPR001005 -
Cla06g00499 1147 SMART sant 972 1033 IPR001005 -
Cla06g00499 1147 Coils Coil 22 42 - -
Cla06g00499 1147 CDD DEXHc_SMARCA1_SMARCA5 216 436 IPR044754 GO:0005524
Cla06g00499 1147 Gene3D - 958 1061 - -
Cla06g00499 1147 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 231 396 IPR014001 -
Cla06g00499 1147 MobiDBLite consensus disorder prediction 163 205 - -
Cla06g00499 1147 SMART helicmild6 550 634 IPR001650 -
Cla06g00499 1147 Gene3D - 870 924 - -
Cla06g00499 1147 PANTHER SNF2/RAD54 HELICASE FAMILY 9 1088 - -
Cla06g00499 1147 ProSiteProfiles SANT domain profile. 869 921 IPR017884 -
Cla06g00499 1147 MobiDBLite consensus disorder prediction 1 70 - -
Cla06g00499 1147 SUPERFAMILY Homeodomain-like 925 1047 IPR009057 -
Cla06g00499 1147 Gene3D iswi atpase 925 957 - -
Cla06g00499 1147 CDD SF2_C_SNF 520 645 - -
Cla06g00499 1147 Gene3D - 220 435 IPR038718 -
Cla06g00499 1147 Pfam HAND 783 865 IPR015194 GO:0003677|GO:0006338|GO:0031491
Cla06g00499 1147 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 436 716 IPR027417 -
Cla06g00499 1147 MobiDBLite consensus disorder prediction 53 69 - -
Cla06g00499 1147 MobiDBLite consensus disorder prediction 27 42 - -
Cla06g00499 1147 PANTHER REMODELING FACTOR, PUTATIVE-RELATED 9 1088 - -
Cla06g00499 1147 SMART ultradead3 215 407 IPR014001 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00499 K11654 SMARCA5, SNF2H, ISWI; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-] - csv:101221495 1989.16
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01693 Cla-Chr5:28660501 Cla06g00499 Cla-Chr6:6047283 2.51E-120 dispersed
Cla06g00233 Cla-Chr6:2850974 Cla06g00499 Cla-Chr6:6047283 3.75E-107 dispersed
Cla06g00499 Cla-Chr6:6047283 Cla06g00562 Cla-Chr6:6814928 8.64E-160 dispersed
Cla07g00108 Cla-Chr7:1269306 Cla06g00499 Cla-Chr6:6047283 6.32E-79 dispersed
Cla10g01660 Cla-Chr10:32322381 Cla06g00499 Cla-Chr6:6047283 1.56E-39 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g350 . . . Bda08g00281 . . . Bma05g01060 Cmo08g01181 . . . . . . . . . . . . . . . Cla06g00499 Cam06g0536 Cec06g0536 Cco06g0540 Clacu06g0521 Cmu06g0523 Cre06g1293 . . . . . . Chy11g01479 . . . . . Bpe05g00850 . . . Sed09g0640 . . Cma08g01207 . Car08g01083 . . Cpe17g00005 Bhi12g02092 Tan06g2636 Cmetu11g0294 Lac12g2383 . . . . . . . . . . Lsi09g01406 . . Cme11g01986
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009268 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 2 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61251 PF00176 SNF2_N 2.70E-71 CL0023 Cla TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g00499 Cla_Chr06 FPKM 11.759523 10.748481 12.397619 14.759831 10.867606 7.62009 10.317776 26.956011 29.326698 27.720671