Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00505 ATGTCTCTCAAGAGCATCTTCCAAGATATGAGGTCCCGCTCACGCTGTGTGGTGCAGGACGCCTCCGCTCCGGAGCCCAGGGACGCTCTGGACCAAAGCTGTTGGGCCAATATGCCTCAGGAGCTTCTCCGGGAGGTTTTGATCAGAATCGAGGCGTCCGAGACCTTTTGGCCGCCTAGGAAGAGTGTCGTCGCTTGCGCCGGAGTGTGCCGGAGCTGGCGAGCCATTACTAAGGAGATCGTTAAAACGCCGGAGGTTTCCGGTAGGTTGACGTTCCCGATCTCTATCAAGCAGCCTGGTCCAAGGGATCCTCTTCTACAGTGTTTCATAAAGCGAAACAGATCCAATCAAACTTATTATCTCTTCCTCAGTTTGACCAGTGCACTAAGTGATGACGGTAAATTTCTACTTGCTGCACGCAAATGCAAGCGCCCGACCTACACAGATTATATTATCTCTTTACATGCTGAGGATTTGTCAAAGGGGAGCAGCACCTACGTTGGGAAATTGAGATCTAATTTCCTTGGAACCAAGTTCACAATCTTCGATGGGCAACCACCACATTCGGGAGCCAAGATCACTAAAAGTCGCTCCACAAGGCTAGTGAATCTGAAACAAGTTTCCCCGAAGGTCCCTGCAGGAAACTATCCAGTTGCACACATTTCATATGAACTAAATGTGTTGGGATCAAGGGGTCCAAGGAGAATGCAATGTATCATGGACGCTATTCCCGCTTCTGCAGTTGAACTTGGAGGAGTGGCTCCAACGCCGACCGAACTTTCTTTGAGCAATGTGGAATTGTTTCCATCATTCCCATTCCTAAGGTCAAAATCCAATGCAGATAGCTTGCTTTCTGAACCTTTGGGCAGTCAGAAAGATGGAATGTTGGTGCTGAGAAACAAAACTCCCAGGTGGCATGAACAGCTTCAATGCTGGTGTCTGAACTTTCATGGAAGAGTTACAATTGCTTCTGTGAAAAATTTTCAATTAGTTGCTTCTCCGGAAAATGATACACCTACACCAGAACATGAGAAGATCATCCTTCAGTTTGGAAAAGTGGGGAAGGATTTATTCACAATGGATTATCGTTACCCAGTCTCCGCTTTCCAGGCTTTTGCAATTTGCCTCAGCAGCTTTGACACTAAGATTGCTTGTGAATGA 1161 47.29 MSLKSIFQDMRSRSRCVVQDASAPEPRDALDQSCWANMPQELLREVLIRIEASETFWPPRKSVVACAGVCRSWRAITKEIVKTPEVSGRLTFPISIKQPGPRDPLLQCFIKRNRSNQTYYLFLSLTSALSDDGKFLLAARKCKRPTYTDYIISLHAEDLSKGSSTYVGKLRSNFLGTKFTIFDGQPPHSGAKITKSRSTRLVNLKQVSPKVPAGNYPVAHISYELNVLGSRGPRRMQCIMDAIPASAVELGGVAPTPTELSLSNVELFPSFPFLRSKSNADSLLSEPLGSQKDGMLVLRNKTPRWHEQLQCWCLNFHGRVTIASVKNFQLVASPENDTPTPEHEKIILQFGKVGKDLFTMDYRYPVSAFQAFAICLSSFDTKIACE 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6119251 6123110 - ClCG06G005400.1 Cla06g00505 274697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00505 386 ProSitePatterns Tub family signature 1. 316 329 IPR018066 -
Cla06g00505 386 Gene3D Tubby Protein; Chain A 93 386 IPR025659 -
Cla06g00505 386 PRINTS Tubby superfamily signature 150 166 IPR000007 -
Cla06g00505 386 PRINTS Tubby superfamily signature 166 190 IPR000007 -
Cla06g00505 386 PRINTS Tubby superfamily signature 215 242 IPR000007 -
Cla06g00505 386 PRINTS Tubby superfamily signature 298 315 IPR000007 -
Cla06g00505 386 PRINTS Tubby superfamily signature 316 332 IPR000007 -
Cla06g00505 386 PRINTS Tubby superfamily signature 343 362 IPR000007 -
Cla06g00505 386 PRINTS Tubby superfamily signature 364 386 IPR000007 -
Cla06g00505 386 Pfam F-box domain 35 82 IPR001810 GO:0005515
Cla06g00505 386 SUPERFAMILY F-box domain 26 78 IPR036047 GO:0005515
Cla06g00505 386 SUPERFAMILY Tubby C-terminal domain-like 84 386 IPR025659 -
Cla06g00505 386 ProSitePatterns Tub family signature 2. 371 386 IPR018066 -
Cla06g00505 386 PANTHER TUBBY-RELATED 1 386 - -
Cla06g00505 386 Pfam Tub family 97 381 IPR000007 -
Cla06g00505 386 PANTHER TUBBY-LIKE F-BOX PROTEIN 9 1 386 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla05g00612 Cla06g00505 CCT
Cla05g00612 Cla06g00505 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01915 Cla-Chr1:33870182 Cla06g00505 Cla-Chr6:6119251 4.26E-148 dispersed
Cla06g00505 Cla-Chr6:6119251 Cla09g00311 Cla-Chr9:3015017 7.94E-13 dispersed
Cla07g00980 Cla-Chr7:25993606 Cla06g00505 Cla-Chr6:6119251 8.19E-130 transposed
Cla08g00355 Cla-Chr8:8941658 Cla06g00505 Cla-Chr6:6119251 4.37E-155 transposed
Cla08g00713 Cla-Chr8:19403833 Cla06g00505 Cla-Chr6:6119251 1.78E-148 transposed
Cla05g00612 Cla-Chr5:5680576 Cla06g00505 Cla-Chr6:6119251 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61252 PF01167 Tub 1.50E-110 CL0395 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00505 K19600 - csv:101203437 748.429