Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00506 ATGGCGCCTGAAATGATGGTCGAATCGGGCTTGTCGATAGTGGATTTTGGGATGGAGTTGGTGGCAGATCATACTTCGGTAGTTTCTTTAAACTTATTTGTAGCTCTTCTTTGCGGTTGCATTGTTATTGGCCATTTGTTAGAGGAAAATCGATGGATCAACGAGTCCATTATAGCCCTTGTCATTGGCTTGTGTACCGGCATCATAATATTGCTAACAACTAGAGGGAAAAGCTCGCATTTATTTTTATTTAATGAAGAGCTTTTCTTTATTTATCTCCTTCCGCCTATCATTTTCAACGCCGGGTTCCAAGTCAAGAAGAAGCAGTTTTTCCGCAACATCATGACCATAGTGCTTTTTGGTGCTTTTGGCACTCTCATATCGTTCTGTATTATATCATTAGGCGCTTTGCACTTCTTCCAGAAAATGAATATTGGTTCCCTTGATCTTGGAGATTATCTAGCTATTGGAGCAATTTTTTCTGCAACAGACTCTGTTTGCACCTTACAGGTTCTTAATCAGGACGAGACGCCTCTTCTGTATAGCCTGGTTTTTGGGGAAGGTGTTGTAAATGATGCCACATCGGTTGTGCTATTCAATGCAATCCAAAACTTTGACCTTTCTCATATGAATTCAAGCATCGTTCTGCAATTCATTGGGAACTTTTTGTATCTGTTCATTGCAAGTACTGTGCTGGGAATTTTAGTTGGCCTCCTTAGTGCATACATAATTAAGAAGCTCTACTTTGGCAGGCATTCTACTGATCGTGAAGTTGCTCTAATGATACTCATGGCGTATTTCTCTTATATGCTAGCTGAACTCTTCTATCTAAGTGCAATTCTCACTGTATTCTTTTGCGGCATTGTTATGTCTCACTATACATGGCATAACGTGACTGAAAGTTCAAGAGTCACTACAAAGCATGCTTTTGCCACCCTTTCTTTTGTTGCCGAGATCTTCATCTTTCTTTACGTTGGCATGGATGCGCTTGATATCGAGAAGTGGAGATTTGTTAGCCACAGTCCTGGAAAATCAATTGGGGTGAGCTCAATACTGTTGGGATTGGTTCTGGTTGGAAGAGCAGCATTCGTTTTTCCTTTATCCTCCTTGTCCAATCTGACCAAGAAGTCCTCGCATGAGAAACTCAACTTGGAACAACAAGTCACTATTTGGTGGGCTGGTCTCATGCGTGGTGCTGTATCCATGGCACTTGCATATAATCAGTTCACTAGGTCAGGCCACACCCATTTACCAGGCAATGCAATCATGATCACCAGTACCATCACAGTTGTTCTTTCCAGTACAGTGGTATTTGGAATGATGACGAAACCCCTAATAGGAATTTTGCTACCCCAAGCAAAATACACAATGAGCATGCTCTCTTCCGAACCCTCTTCCCCAAAATCATTCACGGTCCCACTCCTCGGTAATGACCAAAATACCCCTTCCCCTCTTGGCCTGTTTCTGAGAATCCCATCCCATACAGTTCACCATTACTGGCGAAGATTTGATGACGCCTTTATGCGCCCTGTGTTTGGAGGACGGGGCTTTGTGCCCTTCATCCCAGGCTCCCCTACGGAAGACCCAACACAACAATGGCAAACTGAAGGAGTGGAAGCCATTGATGATAATAAAACCATTCTTATATAG 1650 42.73 MAPEMMVESGLSIVDFGMELVADHTSVVSLNLFVALLCGCIVIGHLLEENRWINESIIALVIGLCTGIIILLTTRGKSSHLFLFNEELFFIYLLPPIIFNAGFQVKKKQFFRNIMTIVLFGAFGTLISFCIISLGALHFFQKMNIGSLDLGDYLAIGAIFSATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFNAIQNFDLSHMNSSIVLQFIGNFLYLFIASTVLGILVGLLSAYIIKKLYFGRHSTDREVALMILMAYFSYMLAELFYLSAILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALDIEKWRFVSHSPGKSIGVSSILLGLVLVGRAAFVFPLSSLSNLTKKSSHEKLNLEQQVTIWWAGLMRGAVSMALAYNQFTRSGHTHLPGNAIMITSTITVVLSSTVVFGMMTKPLIGILLPQAKYTMSMLSSEPSSPKSFTVPLLGNDQNTPSPLGLFLRIPSHTVHHYWRRFDDAFMRPVFGGRGFVPFIPGSPTEDPTQQWQTEGVEAIDDNKTILI 549
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6145109 6151763 + ClCG06G005410.1 Cla06g00506 274698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00506 549 PANTHER SODIUM/HYDROGEN EXCHANGER 3 17 534 - -
Cla06g00506 549 Pfam Sodium/hydrogen exchanger family 32 445 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Cla06g00506 549 PRINTS Na+/H+ exchanger signature 88 99 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Cla06g00506 549 PRINTS Na+/H+ exchanger signature 102 116 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Cla06g00506 549 PRINTS Na+/H+ exchanger signature 117 125 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Cla06g00506 549 PRINTS Na+/H+ exchanger signature 157 167 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Cla06g00506 549 PANTHER SODIUM/HYDROGEN EXCHANGER 17 534 IPR018422 GO:0006812|GO:0015299|GO:0016021
Cla06g00506 549 Gene3D - 150 201 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g01583 Cla-Chr3:31627258 Cla06g00506 Cla-Chr6:6145109 0 dispersed
Cla06g00506 Cla-Chr6:6145109 Cla09g00597 Cla-Chr9:5532619 4.80E-148 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00506 - - csv:101215493 1004.2