Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00513 ATGGCAACAGAAGATGTCGAGATTGTAAAATCTGTAAATGAACAGACTTCAGATACTGGACATAGCAGTAGGCGCCCTGACATTTCACTTCAAATACCCCCGAGATCAACAGGCTTTGGTAAAAGCCGTAGTGGAAAAGGTTTACTGCAATCTCAAGGTTCCAACAAAGGTGGTTTGTCTCCAGGAAGCTTCTTAAGGGCTTTAAGCTTTAAGAGAAAAGGCATAGCTACTGAAGGTGAGAAAAGTTCGCTCCTAACTTCAGACCCAAGGACAACTGCTGAAAGTCCGATAATGACTATCGCTTCAGCCTTTTCGTGGAAAAAGTCTACCTCTCTCCCAGTTACTCCAGCATCAAACTTGTCACCCTTGATTCCCCTCCCTGCCACAACAACTACGATCAATGAAAAGCCAATGCCACGTAAAGCAGTGCGTGCAGTTTCAAGGTCTCTATCCGTGCCCGGTAGAAATATCTACGGTCTACATCTTTTGCTACACCTAGGGCAAATTCTGAGGCCAGTGCCAGTTCTGTTCACTTTAACCCTTGTTCCTTCACATCCCATAGAAGCTAAGGCATGGTTTTATTACAGATTTCAATTTTATGTCCTTACAGATTTTAGTAATTATAGTATTGGTCATGTGAGTGATTTTCATATTCAATCTTTTGAATCAAAGCGATGCATAAATTTTGAGAAGATATTTTTCTTTTATGAAGCCAGTAGCATTTTTAATCAGTTCATTTTTAATCACAACCGAAATAGTATGTTCAAGTTGTGTAAAACGGGATTAGAGCCAAAATTGAAAGTTTACACATATGGACGTTTATATATTGAACCTTATGTAACTTTATTCCATGTATCAGATCAGAATGGTTCTGTTACCTTAGAAAATGATGATGAAGAAATTCCTGAAGAGGAAGCAGTTTGTAGAATCTGTCTTGATCCATGTGAAGAAGAAAACACTCTTAAAATGGAATGCAGTTGCAAAGGAGCCCTTAGGCTTGTTCATAAAGATTGTGCAATAGAATGGTTTAGCAGAAGAGGAAGCAAGGTTTGTGAAGTCTGTAGGCAGGAGGTACAGAATTTACCTGTCACGCTACTCCGCATTCCCACCACTGCTCAACAGGACGGAAGACAGTTGCATAATCAACTGCCTTTTCGTTCACAAACAATAAGTGTTTGGCAGGACTTTGTGGTACTTGTTTTAATTAGCACAATATGCTATTTCTTCTTCCTTGAGCAGCTTCTGATTCACGACTTGAAGACTCAGGCTATCGTTTATGCTGCGCCTTTTTCGTTGCTATTTGCAATCAAGGAGTATATATGGACTTATGCAGCTCTTGAGTTTGCACTTGTAGCAATCATTCTTCACCTTTTCTATACTTTGCTGAAACTGAAGGCCATATATGCCATTTTGCTGTCTGCAATCTTGGGTTTTGGTGTGGCTATGAGCCTGAATGCTCTATACATTCATTACTACATTTGGCGAGTTCGAGTTGCACAGAATCCTAACCCAGTATGA 1518 40.05 MATEDVEIVKSVNEQTSDTGHSSRRPDISLQIPPRSTGFGKSRSGKGLLQSQGSNKGGLSPGSFLRALSFKRKGIATEGEKSSLLTSDPRTTAESPIMTIASAFSWKKSTSLPVTPASNLSPLIPLPATTTTINEKPMPRKAVRAVSRSLSVPGRNIYGLHLLLHLGQILRPVPVLFTLTLVPSHPIEAKAWFYYRFQFYVLTDFSNYSIGHVSDFHIQSFESKRCINFEKIFFFYEASSIFNQFIFNHNRNSMFKLCKTGLEPKLKVYTYGRLYIEPYVTLFHVSDQNGSVTLENDDEEIPEEEAVCRICLDPCEEENTLKMECSCKGALRLVHKDCAIEWFSRRGSKVCEVCRQEVQNLPVTLLRIPTTAQQDGRQLHNQLPFRSQTISVWQDFVVLVLISTICYFFFLEQLLIHDLKTQAIVYAAPFSLLFAIKEYIWTYAALEFALVAIILHLFYTLLKLKAIYAILLSAILGFGVAMSLNALYIHYYIWRVRVAQNPNPV 505
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6198219 6204188 - ClCG06G005470.2 Cla06g00513 274705

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00513 505 SMART ringv_2 307 355 IPR011016 GO:0008270
Cla06g00513 505 MobiDBLite consensus disorder prediction 9 59 - -
Cla06g00513 505 PANTHER OS02G0165000 PROTEIN 7 157 - -
Cla06g00513 505 PANTHER OS02G0165000 PROTEIN 286 505 - -
Cla06g00513 505 Pfam RING-variant domain 308 354 IPR011016 GO:0008270
Cla06g00513 505 ProSiteProfiles Zinc finger RING-CH-type profile. 300 361 IPR011016 GO:0008270
Cla06g00513 505 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 292 362 IPR013083 -
Cla06g00513 505 ProSiteProfiles Zinc finger RING-type profile. 308 355 IPR001841 -
Cla06g00513 505 CDD RING_CH-C4HC3_MARCH 308 355 - -
Cla06g00513 505 SUPERFAMILY RING/U-box 304 358 - -
Cla06g00513 505 PANTHER ZINC FINGER PROTEIN 7 157 - -
Cla06g00513 505 PANTHER ZINC FINGER PROTEIN 286 505 - -
Cla06g00513 505 MobiDBLite consensus disorder prediction 1 61 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00513 - - - csv:101219282 392.504
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00612 Cla-Chr2:6722504 Cla06g00513 Cla-Chr6:6198219 4.31E-13 dispersed
Cla06g00513 Cla-Chr6:6198219 Cla11g01629 Cla-Chr11:29983374 9.25E-59 dispersed
Cla11g00700 Cla-Chr11:8790546 Cla06g00513 Cla-Chr6:6198219 2.65E-07 dispersed
Cla06g00513 Cla-Chr6:6198219 Cla02g02059 Cla-Chr2:35617714 2.27E-57 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g377 . . . . . . . . Cmo08g01171 Cmo17g00289 . . . . . . . . . . . . . . Cla06g00513 Cam06g0551 Cec06g0551 Cco06g0558 Clacu06g0537 Cmu06g0537 Cre06g1305 Cone14ag0794 Cone15ag0795 . . . . Chy11g01462 . . . . . . . . . . . . Cma08g01198 Cma17g00301 Car08g01074 Car17g00276 Cpe12g00253 Cpe17g00101 Bhi12g01749 . . . . . . . . . . . . . Lsi09g01389 . . Cme11g01968
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005455 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 4 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g00513 Cla_Chr06 FPKM 0.9 1.304171 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0