Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00516 ATGAGAACTTCATATCATGGCTTCCCCCTCTTCTCTGTACTGGTTTTCAGTACTCTTCTTGCTCTTCAGGTCGTCAATGGAGCTTTGATCAATAATTTCTATAGGAGAAGTTGCCCCAAAGCTGAGAGAATCATTCAAGACGTCACCTTTCGTCTTGCACGATCAAATCCCAGCCTCGGCGCTCAACTCCTCAGACTTCAATTCCACGACTGTTTCGTTCGGGGATGTGATGCTTCAATTCTATTAGATACCGTTGGAACAAACCCATCAGAGAAAGATGCAAGGCCGAACCAATCTCTATTAGGGTTTGATGCCATTGACAAAATCAAGTTTGAGGTCGAAAAAGCTTGTCGTGGAGTTGTTTCTTGTGCTGATATTCTTGCTCTTGCTGCTCGTGATGCTGTTTCTTTTCCGTTCAAGAATCGGCCGCAATGGCCAGTCTTAACCGGAAGAAGAGACGGGACAGTTTCACGATCATCAGAAGTTACCGGTAATATTCCGTCGCCGTTCTCCGATTTTGCCACTCTTAAGCAACTCTTCCAGAAGAAAGGCCTAACCGTGACCGACCTGGTGATTTTATCAGGTGCTCACACAATTGGAGTAGCTCATTGTGGCACATTCTCAAGGAGGCTTTATAACTTCACAGGCAAAGGAGATGCAGATCCTTCATTAGATCCAAAATATGCAGATTTCCTTAGAACAAAATGTCCAAATCCAGCTGACCCTTCCATTACAGTTGAAATGGATCCAAGGAGTTCTCGTTCCTTTGACAGTGACTATTTCAAAATTGTCACACAAAAAAAGGGTTTGTTTCAATCTGATGCCGCACTTCTCACCGACGCTTCGTCGTCTCGTACCGTCAAACAGTTGCAGAATCCAAGGGCTTTCTCTTCTAGCTTTGCTAATTCCATGTTAAAGATGGCTGCCATTGAAGTACTCACGGGACCTAATAATGGTGAAATTAGACAACGATGTCGTTTTGTCAATTAA 990 43.84 MRTSYHGFPLFSVLVFSTLLALQVVNGALINNFYRRSCPKAERIIQDVTFRLARSNPSLGAQLLRLQFHDCFVRGCDASILLDTVGTNPSEKDARPNQSLLGFDAIDKIKFEVEKACRGVVSCADILALAARDAVSFPFKNRPQWPVLTGRRDGTVSRSSEVTGNIPSPFSDFATLKQLFQKKGLTVTDLVILSGAHTIGVAHCGTFSRRLYNFTGKGDADPSLDPKYADFLRTKCPNPADPSITVEMDPRSSRSFDSDYFKIVTQKKGLFQSDAALLTDASSSRTVKQLQNPRAFSSSFANSMLKMAAIEVLTGPNNGEIRQRCRFVN 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6238791 6241624 + ClCG06G005500.2 Cla06g00516 274708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00516 329 ProSitePatterns Peroxidases proximal heme-ligand signature. 189 199 IPR019793 -
Cla06g00516 329 Gene3D - 32 329 - -
Cla06g00516 329 PRINTS Haem peroxidase superfamily signature 60 74 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla06g00516 329 PRINTS Haem peroxidase superfamily signature 121 138 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla06g00516 329 PRINTS Haem peroxidase superfamily signature 141 153 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla06g00516 329 PRINTS Haem peroxidase superfamily signature 189 204 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla06g00516 329 PRINTS Haem peroxidase superfamily signature 249 264 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla06g00516 329 SUPERFAMILY Heme-dependent peroxidases 30 329 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cla06g00516 329 ProSiteProfiles Plant heme peroxidase family profile. 28 329 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla06g00516 329 PANTHER PEROXIDASE 10 328 - -
Cla06g00516 329 Pfam Peroxidase 51 291 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla06g00516 329 ProSitePatterns Peroxidases active site signature. 60 71 IPR019794 GO:0004601
Cla06g00516 329 PANTHER PEROXIDASE 25-RELATED 10 328 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla06g00516 329 PRINTS Plant peroxidase signature 38 57 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla06g00516 329 PRINTS Plant peroxidase signature 62 82 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla06g00516 329 PRINTS Plant peroxidase signature 101 114 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla06g00516 329 PRINTS Plant peroxidase signature 120 130 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla06g00516 329 PRINTS Plant peroxidase signature 188 200 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla06g00516 329 PRINTS Plant peroxidase signature 247 262 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla06g00516 329 PRINTS Plant peroxidase signature 263 280 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla06g00516 329 PRINTS Plant peroxidase signature 302 315 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla06g00516 329 Gene3D Peroxidase, domain 2 167 307 - -
Cla06g00516 329 CDD secretory_peroxidase 32 328 IPR033905 GO:0004601|GO:0042744
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00824 Cla-Chr2:10994851 Cla06g00516 Cla-Chr6:6238791 1.84E-107 dispersed
Cla06g00516 Cla-Chr6:6238791 Cla11g00913 Cla-Chr11:15495659 6.33E-73 dispersed
Cla06g00516 Cla-Chr6:6238791 Cla06g00517 Cla-Chr6:6258343 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00516 K00430 - csv:101215642 552.362