Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00517 ATGAGAGCTTCAAATCATGGCTTCCCCCTCTTCTCTGTACTGGTTTTCATTACTCTTCTTGCTCTTCACGTCGTCAATGGAGATTTGATCAATAATTTCTATATGAAAAGCTGCCCCCAAGCTGAGAGAATCGTTCAAGACGTCACCTTTAGTCTCGTCCGAACCAATCCCAGCCTTAGCGCTCAACTCCTCAGACTTCACTACCACGACTGTTTCGTTCGAGGATGTGATGGATCAATTCTATTAGATACCGTTGGAACAAACCAATCAGAGAAGGATGCAAGGCCGAACCTATCCCTATTAGGGTTTGATGCCATTGACCAAATCAAGTCCGAGGTTGAGAAAGCTTGCAGTGGAGTTGTTTCCTGTGCTGATATTCTTGCCCTTGCTGCCCGCGACGCAGTTTCCTTTCCGTCCAAAAACCGGCCGCTCTGGCCAGTCTTAACCGGAAGAAGAGATGGAACAGTTTCACGATCATCAGAAGTTACCGGTAATATGCCGTCGCCGTTCTCCGATTTCGCCACTCTTAAGCAAATCTTCGAGAAGAAAGGCCTAACTGTGAGCGATATGGTGATTTTATCAGGTGCTCACACCATTGGAGTTGCTCATTGTGGCGCATTCTCAAGGAGGCTTTATAACTTCACAGGCAAAGGAGATGCAGATCCTTCATTAGATCCAAAATATGCAGATTTTCTTAGAACAAAATGTCCAAATCCAGCTGACTCTTCCATTACAGTTGAAATGGATCCAAAGAGTTCTCGTTCCTTTGATAGTGACTATTTCAAAATTCTCACACAAAAAAAGGGTTTGTTTCAATCCGATGCCGCGCTTCTCACCGACACTTCTTCGTCTCAAACCATCAAACAGTTGCAGAATCCAAAGACTTTCTTTTCTAGCTTTGCTAATTCCATGTTGAAGATGGGAGCCATTGAAGTACTCATGGGACCTAATAATGGCAATTTTTTCATGGATTGTCGTCGTTGCTATGCCACGGCCACCCGCCCCAGACGGCCTCCACAGTTCCACTCTACTCAACTCCAATCGACATTTTCAGCAAGGCCATGTGTGTTGTTTATGAAGCCATTAACTGCAGTATTCAAAGTCTCAATGCATTGTAAAGCATGCGAAAGAACTGTGGCCAAAGTCATTTCCAAATTTAAAGGGGTGGAGAAGTTTGTGATAGACATGGGAAAGCACAAGGTTGTAGTGATGGGGAAGTTTGATCCCCATAAAGTTATGAAGAAACTAAGAGAAAAGACAGGAAAAGCCGTTGAGATGGTGGTCGACAAAGGTTCAATGGTGAAAGATGCAACCGCTGCCAAGGATTCGGAGCGATCGGACCCGAATAATTCCAATCAGTTGATGATGTTAAATTGTTGCAAGGAGAGTGCTCAGTTGCTGGTTTTGTTCAGTGATGAGAATCCAAATGCTTGTTGCATTATGTAG 1446 44.19 MRASNHGFPLFSVLVFITLLALHVVNGDLINNFYMKSCPQAERIVQDVTFSLVRTNPSLSAQLLRLHYHDCFVRGCDGSILLDTVGTNQSEKDARPNLSLLGFDAIDQIKSEVEKACSGVVSCADILALAARDAVSFPSKNRPLWPVLTGRRDGTVSRSSEVTGNMPSPFSDFATLKQIFEKKGLTVSDMVILSGAHTIGVAHCGAFSRRLYNFTGKGDADPSLDPKYADFLRTKCPNPADSSITVEMDPKSSRSFDSDYFKILTQKKGLFQSDAALLTDTSSSQTIKQLQNPKTFFSSFANSMLKMGAIEVLMGPNNGNFFMDCRRCYATATRPRRPPQFHSTQLQSTFSARPCVLFMKPLTAVFKVSMHCKACERTVAKVISKFKGVEKFVIDMGKHKVVVMGKFDPHKVMKKLREKTGKAVEMVVDKGSMVKDATAAKDSERSDPNNSNQLMMLNCCKESAQLLVLFSDENPNACCIM 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6258343 6263813 + ClCG06G005510.2 Cla06g00517 274709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00517 481 SUPERFAMILY Heme-dependent peroxidases 29 327 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cla06g00517 481 PANTHER PEROXIDASE 25-RELATED 20 326 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla06g00517 481 ProSitePatterns Peroxidases proximal heme-ligand signature. 189 199 IPR019793 -
Cla06g00517 481 Gene3D - 32 326 - -
Cla06g00517 481 Pfam Heavy-metal-associated domain 365 421 IPR006121 GO:0046872
Cla06g00517 481 CDD secretory_peroxidase 32 327 IPR033905 GO:0004601|GO:0042744
Cla06g00517 481 SUPERFAMILY HMA, heavy metal-associated domain 364 420 IPR036163 GO:0046872
Cla06g00517 481 Pfam Peroxidase 48 290 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla06g00517 481 Gene3D Peroxidase, domain 2 167 307 - -
Cla06g00517 481 ProSiteProfiles Plant heme peroxidase family profile. 28 329 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla06g00517 481 PANTHER PEROXIDASE 20 326 - -
Cla06g00517 481 CDD HMA 365 425 IPR006121 GO:0046872
Cla06g00517 481 PRINTS Plant peroxidase signature 101 114 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla06g00517 481 PRINTS Plant peroxidase signature 188 200 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla06g00517 481 PRINTS Plant peroxidase signature 120 130 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla06g00517 481 PRINTS Plant peroxidase signature 38 57 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla06g00517 481 PRINTS Plant peroxidase signature 263 280 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla06g00517 481 PRINTS Plant peroxidase signature 62 82 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla06g00517 481 PRINTS Plant peroxidase signature 247 262 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla06g00517 481 PRINTS Plant peroxidase signature 302 315 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla06g00517 481 Gene3D - 361 427 - -
Cla06g00517 481 PRINTS Haem peroxidase superfamily signature 189 204 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla06g00517 481 PRINTS Haem peroxidase superfamily signature 249 264 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla06g00517 481 PRINTS Haem peroxidase superfamily signature 60 74 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla06g00517 481 PRINTS Haem peroxidase superfamily signature 121 138 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla06g00517 481 PRINTS Haem peroxidase superfamily signature 141 153 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla06g00517 481 ProSiteProfiles Heavy-metal-associated domain profile. 369 425 IPR006121 GO:0046872
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00173 Cla-Chr2:1780905 Cla06g00517 Cla-Chr6:6258343 1.02E-94 dispersed
Cla06g00517 Cla-Chr6:6258343 Cla05g00838 Cla-Chr5:8305976 2.63E-83 dispersed
Cla08g00544 Cla-Chr8:16455660 Cla06g00517 Cla-Chr6:6258343 8.69E-11 dispersed
Cla11g00236 Cla-Chr11:2728428 Cla06g00517 Cla-Chr6:6258343 1.07E-09 dispersed
Cla06g00516 Cla-Chr6:6238791 Cla06g00517 Cla-Chr6:6258343 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00517 K00430 - csv:101215642 530.791