Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00518 ATGGCGCTGTGTACGCTAACTTTTCCTGCTCATGTTAGCCGAGTTGCAGTGAAAGAGCACGATGGTTCAAGTGCTGTTTCTTCTCGGTTCTTATGGGGAACGGATCTGGTGTTCCGATTTCAGAAAAGGGTCAATCAGGTCAAGAAAAGGCCAGGTGGGATCTGTGCATCACTTTCAGAGATGGGGGAGTATCCTTCACAAAGGCCACCAACTCCTCTTTTGGACACAATAAACTATCCAATTCATATGAAAAATCTATCCATCAAGGAGCTTTATCAACTAGCTGATGAAGTTAGATCGGATGTCATCTTCAACGTTTCTAAAACTGGTGGTCACTTGGGTTCCAGCCTTGGCGTGGTGGAGCTCACGGTGGCTCTTCACTATGTCTTCAATGCCCCACAGGACAGAATTCTGTGGGATGTTGGGCATCAGTCTTATCCACACAAAATTCTAACTGGAAGGAGGGATAAGATGTCTACTATTAGACAGACAAACGGGTTGTCGGGATTCACGAAACGCTCCGAGAGTGAGTTTGATAGCTTTGGCGCGGGGCATAGCTCTACCACCATCTCCGCAGGCTTAGGAATGGCTGTGGGAAGGGATCTTAAGGGAAGAAAGAATAATGTGGTTGCAGTTATAGGTGATGGTGCCATGACTGCAGGGCAAGCTTATGAAGCCATGAACAATGCCGGGTACCTCGACTCAGACATGATCGTTATTCTTAATGACAACAAACAAGTCTCTTTACCAACTGCAACTCTAGATGGGCCTGTACCGCCTGTGGGAGCTTTGAGCAGTGCTCTCAGTAGGCTGCAGTCCAACAGGCCTCTCAGAGAATTGAGAGAGGTAGCCAAGGGCGTCACAAAACAACTTGGTGGTCCTATGCATGAGTTGGCTGCAAAAGTTGATGAATATGCTCGTGGGATGATTAGTGGTTCTGGATCAACGTTATTTGAAGAGCTGGGGCTCTATTATATTGGCCCTGTTGATGGTCATAACGTGGATGATCTTGTCTCCATTCTTAAGGAAGTTAAGAGTACAAAAACCACTGGTCCAGTCCTCATCCATGTTGTCACTGAGAAAGGACGAGGCTATCCATATGCTGAAAAAGCTGCTGACAAGTACCATGGAGTCACAAAGTTTGATCCTGCTACTGGAAAACAACAGAAACCCAAGGCTCCAACGCAGTCGTACACGACATACTTTGCAGAGGCATTGATTGCAGAAGCTGAAAAGGACAAAGATATTATTGCGATCCATGCTGCAATGGGAGGAGGCACAGGCTTAAATCTCTTTCAAAGACGTTTTCCGACAAGATGCTTTGATGTTGGCATAGCTGAACAGCATGCTGTTACATTTGCTGCTGGTCTGGCTTGTGAAGGCCTTAAACCATTTTGTGCGATCTATTCGTCGTTCATGCAAAGGGCATATGACCAGGCAAGCATTGGCTTCATGTCTATCCTTGATACTCCATTAGCAAGGCGAATTGAATGTGTGTGTTCTTTTTCAATCTCAGTGAAATTTATCATGTTCAAATTGCAGGTAGTTCATGATGTGGATCTGCAAAAGTTGCCCGTGCGATTTGCAATGGATAGAGCAGGCTTGGTTGGAGCAGATGGCCCAACCCACTGTGGCGCTTTCGATGTTACTTTTATGGCATGCCTGCCTAATATGGTGGTCATGGCTCCGTCTGATGAGGCTGAACTCTTTAACATGGTTGCTACAGCTGCAGCCATAGATGACCGACCCAGTTGCTTCCGGTATCCACGAGGTAATGGTATCGGTGTAGAGCTGCCACCAGGGAATAAAGGCATTCCTATTGAGGTCGGGAAAGGGAGGATTTTACTTGAAGGGGAAAGAGTTGCCCTGTTGGGCTATGGAACGGCAGTTCAAAACTGTTTGGCTGCTGCATCTATGGTTGAACGCCATGGCTTACGAATAACAGTTGCAGATGGACGTTTCTGCAAGCCACTCGACCGAGCCCTCATCCGAAGTCTAGCTAAATCACATGAGATTTTAATCACAGTGGAAGAAGGATCGATTGGGGGATTTGGGTCTCATGTCATCCAGTTTCTGGCTCTTGATGGCCTTCTTGACGGCACCTTGAAGTGGAGACCGCTTGTCCTTCCCGACCGATACATCGACCATGGATTGCCAGCAGACCAACTGGCTGAAGCAGGTCTTACTCCATCTCATATTGCTGCTACGGTATTTAATATGCTAGGACAAACCAGGGAAGCTCTTGAGATTATGTCATAG 2259 46.88 MALCTLTFPAHVSRVAVKEHDGSSAVSSRFLWGTDLVFRFQKRVNQVKKRPGGICASLSEMGEYPSQRPPTPLLDTINYPIHMKNLSIKELYQLADEVRSDVIFNVSKTGGHLGSSLGVVELTVALHYVFNAPQDRILWDVGHQSYPHKILTGRRDKMSTIRQTNGLSGFTKRSESEFDSFGAGHSSTTISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPVPPVGALSSALSRLQSNRPLRELREVAKGVTKQLGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVSILKEVKSTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVTKFDPATGKQQKPKAPTQSYTTYFAEALIAEAEKDKDIIAIHAAMGGGTGLNLFQRRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAYDQASIGFMSILDTPLARRIECVCSFSISVKFIMFKLQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTFMACLPNMVVMAPSDEAELFNMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPIEVGKGRILLEGERVALLGYGTAVQNCLAAASMVERHGLRITVADGRFCKPLDRALIRSLAKSHEILITVEEGSIGGFGSHVIQFLALDGLLDGTLKWRPLVLPDRYIDHGLPADQLAEAGLTPSHIAATVFNMLGQTREALEIMS 752
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6264023 6269241 - ClCG06G005530.2 Cla06g00518 274710

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00518 752 CDD TPP_PYR_DXS_TK_like 402 590 - -
Cla06g00518 752 PANTHER BNAA01G35430D PROTEIN 1 748 - -
Cla06g00518 752 SUPERFAMILY TK C-terminal domain-like 605 741 IPR009014 GO:0003824
Cla06g00518 752 Pfam Transketolase, C-terminal domain 610 733 IPR033248 -
Cla06g00518 752 ProSitePatterns Transketolase signature 2. 537 553 IPR020826 -
Cla06g00518 752 Pfam 1-deoxy-D-xylulose-5-phosphate synthase 74 359 IPR005477 GO:0008661|GO:0016114
Cla06g00518 752 Gene3D - 395 488 - -
Cla06g00518 752 Gene3D - 492 600 - -
Cla06g00518 752 Pfam Transketolase, pyrimidine binding domain 397 481 IPR005475 -
Cla06g00518 752 Pfam Transketolase, pyrimidine binding domain 509 592 IPR005475 -
Cla06g00518 752 ProSitePatterns Transketolase signature 1. 99 118 IPR005474 -
Cla06g00518 752 SMART Transket_pyr_3 396 596 IPR005475 -
Cla06g00518 752 PANTHER 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-RELATED 1 748 IPR005477 GO:0008661|GO:0016114
Cla06g00518 752 Hamap 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 73 742 IPR005477 GO:0008661|GO:0016114
Cla06g00518 752 Gene3D - 67 368 - -
Cla06g00518 752 CDD TPP_DXS 110 365 IPR005477 GO:0008661|GO:0016114
Cla06g00518 752 TIGRFAM dxs: 1-deoxy-D-xylulose-5-phosphate synthase 76 479 IPR005477 GO:0008661|GO:0016114
Cla06g00518 752 Gene3D - 610 742 IPR009014 GO:0003824
Cla06g00518 752 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 71 458 IPR029061 -
Cla06g00518 752 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 508 592 IPR029061 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00518 K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] - csv:101214927 1388.63
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g00518 Cla-Chr6:6264023 Cla10g00744 Cla-Chr10:12591817 0 dispersed
Cla06g00518 Cla-Chr6:6264023 Cla10g00743 Cla-Chr10:12492774 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g381 . . . . . Bpe14g01154 . . Cmo08g01169 Cmo17g00285 . . . . . . . . . . . . . . Cla06g00518 Cam06g0557 Cec06g0557 Cco06g0564 Clacu06g0545 Cmu06g0542 Cre06g1310 . . Cone7ag0185 Cone4ag0181 . . Chy11g01457 . Blo02g00573 . . . . . . . . . . Cma08g01196 Cma17g00297 Car08g01072 Car17g00273 Cpe12g00249 Cpe17g00103 Bhi12g01753 . . . . . . . . . . . . . Lsi09g01384 . . Cme11g01961
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000430 4 7 2 1 2 4 3 4 3 4 4 4 3 4 4 4 4 5 5 4 3 3 4 3 4 4 5 6 10 4 121
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g00518 Cla_Chr06 FPKM 74.53965 79.695755 214.524796 200.648575 130.362808 128.597687 116.110382 168.481384 179.92247 160.984772