Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00524 ATGGAAAATGATCAAGAATCTCCTGCTTCTTCTTCCAGTAAGACAAGCGAGCGAACGTTGCAACGATCGAAAATGTTGGAAGTTTCAATCGTAGAGAAATTGGATCAGCAAAACTCTGTGGATCTGGCTGGATACGGTTCGGCGGAGATTCAAACGTCCGAAAGCAATGACTCAAGCGATAATGATAGTCAAAATCAATCAAAAGATCAGACAAATCAAGCTGTGGGGTCTCCCAATTTAGGGAATAGATCAAGACCGCGTGGATTCTCCGATTCTTTTGCTTCTCATGATTTGGAAGATGAAACCAAAGATGAGGCATCTCCAAGAGGGGTGCTCGAGGACTGCTCAAGAAGTTTAGATTCTGAAACGACAACTTCCCGGGCCAGCACTTCCGATTGGGAAGGTCATCCGGACTCGAGAAATCCAAGTCATTGGAGAGGATTCTTTCGTTTACTGAAGAAAGGACCTCAAATGCGATTTCAGACCTTTCCTCCTCTTAAAGCTGTTCCAAAACTCACCAGAAGAAAGAGCAAAAGAATTAGAGAGGATATGATTCCGGTAGTATCACCAGTGATGGACTCTTCTATAGAGACCGAGTTTTGCTATTTCAGATCTTCTTGGAAGAATTTCACACTGTCAGAGCTGCAAGCTGCAAGCAATAACTTCAGCCAAGGTTTATTTCCAGACACCGAATTATCCTTGTTGAATATATCTAGTTTGTATGCTGATAAAACATCTTTCTTTTTTTCCAAAGAAAACTTGATTGGTGAGGGTGGTTATTCTGAAGTTTACAAGGGTCAGCTGGAAGATGGGCAACTTGTTGCGATCAAGCGGCTTAATAGAGGTAGCCAAGAAGAGATGACTGCAGACTTCTTGTCTGAGCTCGGAATTATTGTTCATGTTGATCATCCGAATATCGCGAGCGTAATTGGGTACGGCGTTGAAGGGGGAATGCACCTTATACTCCATTTATCACCCCATGGGAGCCTAGCATCCATACTTTATGGGCCGAAGGAGAGACTGGATTGGTCAACGAGGTACAGGATTTCTCTAGGAATTGCTGAAGGCCTCCTGTATCTTCATGAAGGCTGCCAAAGAAGAATAATCCACAGAGACATTAAGGCTGCTAATATATTGCTTAGAGATGATTTTGAGCCTCAGATATCTGACTTCGGGCTTGCAAAGTGGCTCCCAGATCAATGGACTCACCACACTGTGTCAAAGTTTGAAGGCACATTTGGGTACCTTCCTCCCGAGTTCTTTATGCATGGCATTGTTGATGAAAAAACTGATGTCTATGCCTATGGAGTACTTTTATTGGAACTCATTACCGGACGACGAGCACTGGATAGCACACAACAAAGCCTTGTGATGTGGGCTAAACCTCTACTTACTAAACAGAATCTCAAGGAACTTGTTGATTCATCTCTTGTTGACGCATTTGACACCGAACAAATGAAACGGATGATATCAATAGCTTCAATGTGCATAAATCAGTCTTCAATTCAACGGCCGGAAATGAGTGAGATTGTTCAGATTATGAAAGGGGATGGTGTTTGTGATTTGGAGCTTGTAAAACGACAGAAGTCTAAACTTCGAAGGACATACTCTGAGGAGCTTTTGGATGCAGAAGAATACAATTCTACCAAATATTTAAGTGATATTGATCGACATTTGGAGATTGTTTTAGGAACCTGTCATATTGATGTTTAG 1713 42.27 MENDQESPASSSSKTSERTLQRSKMLEVSIVEKLDQQNSVDLAGYGSAEIQTSESNDSSDNDSQNQSKDQTNQAVGSPNLGNRSRPRGFSDSFASHDLEDETKDEASPRGVLEDCSRSLDSETTTSRASTSDWEGHPDSRNPSHWRGFFRLLKKGPQMRFQTFPPLKAVPKLTRRKSKRIREDMIPVVSPVMDSSIETEFCYFRSSWKNFTLSELQAASNNFSQGLFPDTELSLLNISSLYADKTSFFFSKENLIGEGGYSEVYKGQLEDGQLVAIKRLNRGSQEEMTADFLSELGIIVHVDHPNIASVIGYGVEGGMHLILHLSPHGSLASILYGPKERLDWSTRYRISLGIAEGLLYLHEGCQRRIIHRDIKAANILLRDDFEPQISDFGLAKWLPDQWTHHTVSKFEGTFGYLPPEFFMHGIVDEKTDVYAYGVLLLELITGRRALDSTQQSLVMWAKPLLTKQNLKELVDSSLVDAFDTEQMKRMISIASMCINQSSIQRPEMSEIVQIMKGDGVCDLELVKRQKSKLRRTYSEELLDAEEYNSTKYLSDIDRHLEIVLGTCHIDV 570
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6315553 6319413 - ClCG06G005590.1 Cla06g00524 274716

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00524 570 Gene3D Transferase(Phosphotransferase) domain 1 326 529 - -
Cla06g00524 570 MobiDBLite consensus disorder prediction 117 132 - -
Cla06g00524 570 ProSitePatterns Protein kinases ATP-binding region signature. 255 277 IPR017441 GO:0005524
Cla06g00524 570 SUPERFAMILY Protein kinase-like (PK-like) 249 513 IPR011009 -
Cla06g00524 570 MobiDBLite consensus disorder prediction 1 140 - -
Cla06g00524 570 Pfam Protein tyrosine and serine/threonine kinase 252 513 IPR001245 GO:0004672|GO:0006468
Cla06g00524 570 MobiDBLite consensus disorder prediction 32 89 - -
Cla06g00524 570 ProSitePatterns Serine/Threonine protein kinases active-site signature. 368 380 IPR008271 GO:0004672|GO:0006468
Cla06g00524 570 ProSiteProfiles Protein kinase domain profile. 249 525 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla06g00524 570 PANTHER OS08G0249100 PROTEIN 76 552 - -
Cla06g00524 570 MobiDBLite consensus disorder prediction 1 23 - -
Cla06g00524 570 SMART serkin_6 249 513 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla06g00524 570 PANTHER RECEPTOR-LIKE CYTOSOLIC SERINE/THREONINE-PROTEIN KINASE RBK2 ISOFORM X1 76 552 - -
Cla06g00524 570 Gene3D Phosphorylase Kinase; domain 1 234 323 - -
Cla06g00524 570 MobiDBLite consensus disorder prediction 90 111 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00524 - - - csv:101216575 966.066
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01587 Cla-Chr2:30532778 Cla06g00524 Cla-Chr6:6315553 5.54E-174 dispersed
Cla02g02373 Cla-Chr2:38788822 Cla06g00524 Cla-Chr6:6315553 1.49E-155 dispersed
Cla06g00524 Cla-Chr6:6315553 Cla10g00741 Cla-Chr10:12245490 1.19E-137 dispersed
Cla06g00524 Cla-Chr6:6315553 Cla11g00221 Cla-Chr11:2548037 3.01E-71 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g390 . Blo12g00063 . . Bpe04g01182 . Bma04g01062 . Cmo08g01162 . . . . . . . . . . . . . . . Cla06g00524 . . . . . . . Cone15ag0801 Cone7ag0189 . . . Chy11g01451 . . . . . . . . . . . . Cma08g01190 Cma17g00290 Car08g01067 Car17g00266 Cpe12g00242 Cpe17g00108 Bhi12g01765 . . . . . . . . . . . . . Lsi09g01380 . . Cme11g01956
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009081 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 0 1 1 2 1 1 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80622 PF07714 PK_Tyr_Ser-Thr 4.40E-42 CL0016 Cla PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g00524 Cla_Chr06 FPKM 1.29671 2.016632 1.610699 1.760942 1.608473 1.453934 1.904709 2.903654 2.58922 3.214357