Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00528 ATGGGTTGTATCCATACAAAATGTTGCTGTCGCTACCCAAAATCGTTGGTTGGAGAATCCCAAGACTTTCGACAAGAGGTTCCTTACTATCTTCAAGATAAGAACACTGTGATAGAGAAATCATTGGAGTTGATTCCTGTTGCTTCGCACAACTATCATTTGGAATACTTGGTACTGGCTCAGCGTGGTTACTACCCTGAATCTCCTGATAAAGAAAACCAAGACAGTTTCTGCATTAGAACAAATATTCAAGGTAACCCAAATGCCCATTTCTTTGGTGTTTTTGATGGGCATGGTCAATTTGGAATGCAGTGTTCAAATTTTGTGAAGGATAGACTAATAGAAAAGCTATGTAATGATCCCACATTGTTAGATGATCCAGTACAAGCTTATAATTCAGCATTTTTGTCTACAAATGATGAGTTACATACAAGTGAGATTGATGATTCCATGAGTGGAACAACTGCAATTACAGTTCTTGTTGTTGGGGATACCCTTTATGTGGCTAATGTTGGGGATTCAAGAGCTGTAATTGCAGTTAAAGAAGGGGATAGTGTTCTTGCTAAGGACTTGTCTAATGATCAAACACCATTTAGAAAAGATGAGTATGAGAGAGTTAAGCTTTGTGGGGCTAGAGTTCTGAGTGTTGATCAAGTGGAAGGACTTGTGGATCCTGATATTCAATGCTGGGGCGATGAAGAAAGTCAGGGCGGCGATCCGCCTCGACTGTGGGTTCAAAATGGATTGTATCCTGGAACTGCGTTTACTAGGAGCATTGGTGATAGTACTGCAGAGAAGATTGGTGTAAATGCTGTTCCGGAGGTTTTAGTTCTTCAGCTTAACCCCAATCATCTTTTCTTTGTGGTTGCTAGTGATGGAGTTTTCGAGTTTCTTTCAAGTCAAACTGTTGTTGATATGGCATCGAGTTATGCAGATCCTCAAGATGCATGCACTGCCATTGCTGCCGAGTCGTATAAACTATGGATGGAACATGAAAATCGGACCGATGATATAACGATCATTGTTGTTCAAATCAAAGGCTTGACTAATTCAGGTGCTGAGAATCTGTCCAGCACTGGGCTTGAGACTGCTTCTTTGAGAATCGATTTCTCGGATCTACCTACTGAACCGCCGAACTCTCAACATGTTGATGTGACAAATCGGAACCCAGCAATCGAGTTGAAACAAATACCCATCTTCTTGCTTAGCATTGGACCAACTAAGTTGACAAAGACAGAGAGAGTTGGTAACTTAGACATGGAAAAATGGATGGATTGTTCTCTTGCTGGATGCTTGCAGATTCATGATAGAGATTGA 1317 41.0 MGCIHTKCCCRYPKSLVGESQDFRQEVPYYLQDKNTVIEKSLELIPVASHNYHLEYLVLAQRGYYPESPDKENQDSFCIRTNIQGNPNAHFFGVFDGHGQFGMQCSNFVKDRLIEKLCNDPTLLDDPVQAYNSAFLSTNDELHTSEIDDSMSGTTAITVLVVGDTLYVANVGDSRAVIAVKEGDSVLAKDLSNDQTPFRKDEYERVKLCGARVLSVDQVEGLVDPDIQCWGDEESQGGDPPRLWVQNGLYPGTAFTRSIGDSTAEKIGVNAVPEVLVLQLNPNHLFFVVASDGVFEFLSSQTVVDMASSYADPQDACTAIAAESYKLWMEHENRTDDITIIVVQIKGLTNSGAENLSSTGLETASLRIDFSDLPTEPPNSQHVDVTNRNPAIELKQIPIFLLSIGPTKLTKTERVGNLDMEKWMDCSLAGCLQIHDRD 438
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6360444 6363911 - ClCG06G005630.1 Cla06g00528 274720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00528 438 ProSiteProfiles PPM-type phosphatase domain profile. 55 345 IPR001932 -
Cla06g00528 438 PANTHER PROTEIN PHOSPHATASE 2C AND CYCLIC NUCLEOTIDE-BINDING/KINASE DOMAIN-CONTAINING PROTEIN 39 358 - -
Cla06g00528 438 SMART PP2C_4 56 343 IPR001932 -
Cla06g00528 438 Pfam Protein phosphatase 2C 74 324 IPR001932 -
Cla06g00528 438 ProSitePatterns PPM-type phosphatase domain signature. 91 99 IPR000222 GO:0043169
Cla06g00528 438 CDD PP2Cc 71 345 IPR001932 -
Cla06g00528 438 Gene3D - 49 347 IPR036457 -
Cla06g00528 438 PANTHER CYCLIC NUCLEOTIDE-DEPENDENT PROTEIN KINASE 39 358 - -
Cla06g00528 438 SUPERFAMILY PP2C-like 48 347 IPR036457 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla05g00593 Cla06g00528 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g00528 Cla-Chr6:6360444 Cla05g01817 Cla-Chr5:30126378 6.67E-29 dispersed
Cla06g00885 Cla-Chr6:13604639 Cla06g00528 Cla-Chr6:6360444 8.98E-35 transposed
Cla05g00593 Cla-Chr5:5436842 Cla06g00528 Cla-Chr6:6360444 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00528 - - csv:101217134 761.14