Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00531 ATGCGAGGCCACGATTGGATCAATACTGCCCTTCCTGATGAGTTGATTGTTGAGATCTTTCGGTGCCTTGATTCGAAGCTCAGTCGCGATGCTTGTTCTCTCGTTTGCAGGCGTTGGCTCAAGCTCGAGCGCCTCAGCCGGACCACCCTACGAATCGGTGCTACTGGTAGCCCCGACCTCTTTGTTCAGCTCCTCGCTCGCCGTTTTGTCAATGTCAGAAATGTCCACATTGACGAGCGATTGGCGATTTCTTTTTCCCTTCATCCACGAAGAAGACGTCGCAAAGAAGCCATGCGCTTGCCATACCATGCAACTGATAATACTGGGGCTGAAGGTGCGTTGGAGTCTTCGTGTCTGTCAGATGCTGGGCTATTGGTTCTCTCCGTAGGTTTTCCAAACCTCGAGAAACTAAGCTTAATTTGGTGCTCTAATATTTCAAGTCACGGCTTGACAACCCTAGCTGAGAAGTGTAAATTTTTGAAGTCACTGGATCTACAGGGCTGCTATGTTGGGGACCAAGGTGTAGCTGCAGTTGGGGAATTCTGTAAACAACTTGAAGATGTAAATCTGCGTTTTTGTGAAGGGTTGACTGATACTGGTTTGGTTGCATTAGCCCATGGTTGTGGGAAATCATTGAAAGCATTTGGTATTGCAGCTTGCGCCAAAATAACAGATGTCTCATTAGACGCTGTGGGTATGCACTGCACATATCTTGAGACCTTGTCGCTAGATTCAGAAGTTATCCACAACAAAGGGGTGCTGTCTGTAGCTCAAGGCTGCCCAAATCTGAAAGTTTTGAAGCTACAATGTACGAATGTCACAGACGAAGCATTGGTAGCTGTAGGCTCCTTATGTCCTTCTCTGGAACTATTGGCTTTATACAGCTTTCAAGAATTTACTGACAAGGGTTTACGTGCCATTGGGATAGGCTGCAAGAAGTTAAAAAATCTCACTCTAAGTGATTGCTATTTCCTGAGCGATATGGGCTTGGAAGCTGTTGCAGCTGGTTGTAAAGAACTAACACATCTTGAAGTGAACGGCTGCCACAACATTGGAACCATGGGACTTGAATCCATCGCAAGATCTTGCCTCCAACTCACGGAATTGGCTTTGTTGTACTGCCAAAAGATTGCTAACTCCGGTCTTCTTGGAGTTGGTCAAAGTTGCAAGTTCTTACAAGCGCTTCACTTGGTAGATTGTTCAAAAATTGGAGATGAAGCAATATGTGGCATAGCCAAAGGATGCACAAATTTGAAGAAACTCCATATTCGTCGATGTTATGAGATTGGGAATGCAGGAATCATAGCTATTGGCGAGAATTGCAAATTCCTCACGGATTTGAGCCTCAGATTTTGTGATAGGGTTGGTGATGAGGCACTTATTGCCATTGGTAAGGGTTGTTCCCTACATCAGCTGAATGTTAGTGGGTGCCATCGTATCGGTGACGAGGGAATTGCAGCCATTGCTAGAGGTTGTCCCCAATTGAGTTACTTAGATGTAAGCGTTCTCGAGAACTTAGGTGATATGGCAATGGCTGAGTTAGGGGAAGGCTGTCCCTTGCTCAAGGACGTGGTATTGTCTCACTGTCACCAGATAACCGATGCGGGTATAATGCATTTAGTGAAGTGGTGCACAATGCTCGAATCCTGTCACATGGTCTACTGTCCTGGTATTTCCGCAGCTGGGGTCGCCACTGTCGTTTCTAGCTGCCCCAGCATAAAGAAAATCCTTGTCGAGAAATGGAAGGTGAGTGAGAGAACGAAACGACGTGCTGGTTCAGTTATTTCCTACCTTTGCGTGGACCTCTAG 1809 46.27 MRGHDWINTALPDELIVEIFRCLDSKLSRDACSLVCRRWLKLERLSRTTLRIGATGSPDLFVQLLARRFVNVRNVHIDERLAISFSLHPRRRRRKEAMRLPYHATDNTGAEGALESSCLSDAGLLVLSVGFPNLEKLSLIWCSNISSHGLTTLAEKCKFLKSLDLQGCYVGDQGVAAVGEFCKQLEDVNLRFCEGLTDTGLVALAHGCGKSLKAFGIAACAKITDVSLDAVGMHCTYLETLSLDSEVIHNKGVLSVAQGCPNLKVLKLQCTNVTDEALVAVGSLCPSLELLALYSFQEFTDKGLRAIGIGCKKLKNLTLSDCYFLSDMGLEAVAAGCKELTHLEVNGCHNIGTMGLESIARSCLQLTELALLYCQKIANSGLLGVGQSCKFLQALHLVDCSKIGDEAICGIAKGCTNLKKLHIRRCYEIGNAGIIAIGENCKFLTDLSLRFCDRVGDEALIAIGKGCSLHQLNVSGCHRIGDEGIAAIARGCPQLSYLDVSVLENLGDMAMAELGEGCPLLKDVVLSHCHQITDAGIMHLVKWCTMLESCHMVYCPGISAAGVATVVSSCPSIKKILVEKWKVSERTKRRAGSVISYLCVDL 602
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6398541 6403825 - ClCG06G005660.2 Cla06g00531 274723

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00531 602 PANTHER F-BOX/LRR-REPEAT PROTEIN 4 473 577 - -
Cla06g00531 602 PANTHER F-BOX/LRR-REPEAT PROTEIN 4 12 488 - -
Cla06g00531 602 SMART LRR_CC_2 518 543 IPR006553 -
Cla06g00531 602 SMART LRR_CC_2 209 234 IPR006553 -
Cla06g00531 602 SMART LRR_CC_2 363 388 IPR006553 -
Cla06g00531 602 SMART LRR_CC_2 285 310 IPR006553 -
Cla06g00531 602 SMART LRR_CC_2 492 517 IPR006553 -
Cla06g00531 602 SMART LRR_CC_2 260 284 IPR006553 -
Cla06g00531 602 SMART LRR_CC_2 389 414 IPR006553 -
Cla06g00531 602 SMART LRR_CC_2 467 491 IPR006553 -
Cla06g00531 602 SMART LRR_CC_2 182 207 IPR006553 -
Cla06g00531 602 SMART LRR_CC_2 235 259 IPR006553 -
Cla06g00531 602 SMART LRR_CC_2 415 440 IPR006553 -
Cla06g00531 602 SMART LRR_CC_2 337 362 IPR006553 -
Cla06g00531 602 SMART LRR_CC_2 311 336 IPR006553 -
Cla06g00531 602 SMART LRR_CC_2 131 156 IPR006553 -
Cla06g00531 602 SMART LRR_CC_2 441 466 IPR006553 -
Cla06g00531 602 SMART LRR_CC_2 157 181 IPR006553 -
Cla06g00531 602 SMART LRR_CC_2 544 569 IPR006553 -
Cla06g00531 602 Pfam F-box 9 48 IPR041567 -
Cla06g00531 602 Gene3D - 6 47 - -
Cla06g00531 602 SUPERFAMILY F-box domain 10 42 IPR036047 GO:0005515
Cla06g00531 602 Pfam Leucine Rich repeat 415 437 IPR001611 GO:0005515
Cla06g00531 602 Pfam Leucine Rich repeat 441 463 IPR001611 GO:0005515
Cla06g00531 602 Pfam Leucine Rich repeat 518 540 IPR001611 GO:0005515
Cla06g00531 602 Pfam Leucine Rich repeat 260 280 IPR001611 GO:0005515
Cla06g00531 602 Pfam Leucine Rich repeat 467 489 IPR001611 GO:0005515
Cla06g00531 602 Pfam Leucine Rich repeat 156 177 IPR001611 GO:0005515
Cla06g00531 602 Pfam Leucine Rich repeat 340 360 IPR001611 GO:0005515
Cla06g00531 602 Pfam Leucine Rich repeat 185 205 IPR001611 GO:0005515
Cla06g00531 602 SUPERFAMILY RNI-like 118 258 - -
Cla06g00531 602 SMART LRR_RI_2 260 290 - -
Cla06g00531 602 SMART LRR_RI_2 466 494 - -
Cla06g00531 602 SMART LRR_RI_2 157 187 - -
Cla06g00531 602 SUPERFAMILY RNI-like 233 580 - -
Cla06g00531 602 Gene3D Ribonuclease Inhibitor 113 350 IPR032675 -
Cla06g00531 602 Gene3D Ribonuclease Inhibitor 351 602 IPR032675 -
Cla06g00531 602 PANTHER UNCHARACTERIZED 12 488 - -
Cla06g00531 602 PANTHER UNCHARACTERIZED 473 577 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00531 K10268 FBXL2_20; F-box and leucine-rich repeat protein 2/20 - csv:101216664 1155.58
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01397 Cla-Chr2:28459551 Cla06g00531 Cla-Chr6:6398541 1.95E-11 dispersed
Cla02g01422 Cla-Chr2:28742149 Cla06g00531 Cla-Chr6:6398541 5.51E-07 dispersed
Cla05g01626 Cla-Chr5:27630305 Cla06g00531 Cla-Chr6:6398541 2.16E-09 dispersed
Cla05g01740 Cla-Chr5:29218923 Cla06g00531 Cla-Chr6:6398541 1.14E-20 dispersed
Cla05g02075 Cla-Chr5:32407294 Cla06g00531 Cla-Chr6:6398541 3.52E-08 dispersed
Cla06g00531 Cla-Chr6:6398541 Cla11g00282 Cla-Chr11:3251337 5.18E-28 dispersed
Cla07g00256 Cla-Chr7:2831907 Cla06g00531 Cla-Chr6:6398541 9.30E-16 dispersed
Cla07g01602 Cla-Chr7:33326825 Cla06g00531 Cla-Chr6:6398541 2.32E-09 dispersed
Cla08g00651 Cla-Chr8:18717876 Cla06g00531 Cla-Chr6:6398541 1.21E-11 dispersed
Cla09g01012 Cla-Chr9:10631110 Cla06g00531 Cla-Chr6:6398541 8.63E-06 dispersed
Cla10g01322 Cla-Chr10:28175508 Cla06g00531 Cla-Chr6:6398541 3.91E-17 dispersed
Cla11g01410 Cla-Chr11:27658586 Cla06g00531 Cla-Chr6:6398541 4.18E-23 dispersed
Cla11g01411 Cla-Chr11:27678588 Cla06g00531 Cla-Chr6:6398541 3.19E-24 dispersed
Cla06g00531 Cla-Chr6:6398541 Cla08g01334 Cla-Chr8:26203630 3.57E-23 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g405 . . Bda03g01248 . . Bpe14g01357 . . Cmo08g01154 Cmo17g00271 . . . . . . . . . . . . . . Cla06g00531 Cam06g0572 Cec06g0570 Cco06g0578 Clacu06g0560 Cmu06g0554 Cre06g1322 . Cone15ag0808 . . . . Chy11g01444 . . . . . . . . . Sed06g0516 . . Cma08g01183 . Car08g01059 Car17g00259 Cpe12g00236 Cpe17g00113 Bhi12g01780 Tan06g2588 Cmetu07g1857 Lac12g2348 . . . . . . . . . . . . . Cme11g01949
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010433 1 1 0 1 1 1 2 1 0 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 0 1 1 2 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g00531 Cla_Chr06 FPKM 8.376554 7.45645 4.140709 3.087085 2.504108 1.331139 2.309339 0.208698 0.54551 0.820048