Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00536 ATGAGCCGGACAGAGGTTCCTCCCGATCTTCCTTCTGGAGATCATCAATCCCAATCTCAGGATCAGAGCACGAGTAATGACACAGACTTGTCGTCTTCAGATATGATTAGTTTCGAATTATCCAATGGCCATCCTTATGGACCCAATGTACCAAACTTGATGGACGATGATCAGTATGTCGAGTATCCACTTGACGACTTGGCAGGATTTCCGTGCAGTGTAGAGGAGGAAGAAAGGATGCTCATGGAAGCAGTAATGGAATCATTGAAGGATTTCAAAATGAAAAACGCTCAGGAAGATAATCAAACTTCGAGTGTATGTACCAACAATAAGGATGTTTTGCAGAAAGATGAATGTGGAGTTTCACATATAGACCATTGTGGAGTTCTTCATCCGGAACCCACCACCACTTCAAATGACCATTTTTCTCAGTTTAAAGCAGAATCTGCTTCAACTTCAGAAGAGTACAGTATTTCTATTAAACCAGAATCTGCTTCCGTAGCAAGGGATTTGAATTCGGTATCTGATCGCTCGTGTTATGATAAAAGCGAATCTTCCGTAGGACCTGCATCTCATGCTCTTCCTTCTACTGCTGGAACTGAAAGTGCAGGGGCTTCCTCATGTACTAATCCACCAGCAAAAAGCCAAAGTTCAGCTGAAGCCGACGTGTCAGCGAATACAAAGGCAACCGTAACTGTTGTCCGTAATCCCGCAAGCCATATTATGGATGTTTTGATTTCTTTGGCGACGGTTCTCGAGTTGAGTTCGAGGGATACCTCTAAATCCTATTCAAATCTTCGGTCGCCGACTCCTCCACCAGTGACTTTCTCAACTTCTCGCTTCGAGACCGTCAATGGATCGCATGAGTTCAAGATCAATGGGTATTCCCTTAATAAAGGGATGGGGATTGGGAAATACATCGCGTCTGATACCTTTATGGTTGGGGGGTATGCGTTTGCTATATATTTCTACCCAGACGGGAAGAGCGTCGAGGATAACGCGTCGTATGTCTCGGTTTTTATAGCCTTGGCTAGCGAAGGGACTGACGTTCGAGCCCTTTTCGAATTGACGCTGTTGGATCAAAGTGGGAAGGAGAACCACAAGGTGCATAGCCATTTCGAGAGAAGGCTCGAGAGTGGTCCTTATACGCTTAAATATCGAGGAAGCATGTGGGGGTATAAACGTTATTTTAAAAGAACTGTTTTAGAAACATCCGACTTCCTAAAGGACGACTGCCTTGAAATCCACTGTGTAGTTGGTGTTGTTAAGTCCCACACAGAGGGACCCAAGATTTACTCCATAACAGCACCACCCTCTGATATAGGTCAGCATTTTGGGAAGCTTTTGGAGAGTGGGAAACTAACTGATGTTAACTTTGAAGTAGATGGGGAAACATTTTCTGCCCACAAGTTAGTTCTTGCTGCACGGTCACCTGTCTTTAGGGCACAACTCTTTGGCCCATTGAAGGACCAGAATACTGAGTGCATAAAAGTCGAAGATATGGAAGCCCCAGTATTTAAGGCATTGCTTCATTTCATATATTGGGATGGCCTACCAGACATGCAAGAAATTGTGGGTTTAAACTCAAAATGGGCTTCCACTCTGATGTCTCAGCATCTACTTGCCGCAGCAGACAGATATGCACTTGACAGGCTCAAATTGCTTTGCGAGGCTAAACTTTGTGAGGATGTTGCTATAAATACAGTGGCAACGACGTTAGCGTTGGCTGAGCAGCATCACTGTTTCCAATTAAAAGCTGTATGTCTGAAAGTCATTGCATTGCCGGAGAATTTGAGAGCTGTAATGCAAACGGAGGGGTTTGAATATTTGAAAGAGAGCTGCCCATCGGTTCTCACTGAACTACTAGAATATGTAGCAAGGGTGACGGAGCATGCAGTAATTACTTGCAGCGGGTATGGAAATGGAACGGTGTTAGACGGTAGTTATGTGAATGGAAGACGGAGTACAGTTCGCTTTGCATTTCCAATGAATCATGTCTTAAACTTCATCGTCTCATGCAACGGTGCTGCTGTTGGTTTCAATAAGACTCGTGGGAGATGGTCCACGAGAAGATTCAGTACAAGCCCGCATTGGAGGTCGGTTACGTCTTCACTGAAACAACCGCAGCCAGCAGAATGA 2139 44.69 MSRTEVPPDLPSGDHQSQSQDQSTSNDTDLSSSDMISFELSNGHPYGPNVPNLMDDDQYVEYPLDDLAGFPCSVEEEERMLMEAVMESLKDFKMKNAQEDNQTSSVCTNNKDVLQKDECGVSHIDHCGVLHPEPTTTSNDHFSQFKAESASTSEEYSISIKPESASVARDLNSVSDRSCYDKSESSVGPASHALPSTAGTESAGASSCTNPPAKSQSSAEADVSANTKATVTVVRNPASHIMDVLISLATVLELSSRDTSKSYSNLRSPTPPPVTFSTSRFETVNGSHEFKINGYSLNKGMGIGKYIASDTFMVGGYAFAIYFYPDGKSVEDNASYVSVFIALASEGTDVRALFELTLLDQSGKENHKVHSHFERRLESGPYTLKYRGSMWGYKRYFKRTVLETSDFLKDDCLEIHCVVGVVKSHTEGPKIYSITAPPSDIGQHFGKLLESGKLTDVNFEVDGETFSAHKLVLAARSPVFRAQLFGPLKDQNTECIKVEDMEAPVFKALLHFIYWDGLPDMQEIVGLNSKWASTLMSQHLLAAADRYALDRLKLLCEAKLCEDVAINTVATTLALAEQHHCFQLKAVCLKVIALPENLRAVMQTEGFEYLKESCPSVLTELLEYVARVTEHAVITCSGYGNGTVLDGSYVNGRRSTVRFAFPMNHVLNFIVSCNGAAVGFNKTRGRWSTRRFSTSPHWRSVTSSLKQPQPAE 712
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6437417 6447741 + ClCG06G005705.1 Cla06g00536 274728

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00536 712 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1-LIKE 266 638 - -
Cla06g00536 712 Gene3D Potassium Channel Kv1.1; Chain A 431 558 IPR011333 -
Cla06g00536 712 CDD MATH 286 419 IPR002083 GO:0005515
Cla06g00536 712 SUPERFAMILY POZ domain 432 562 IPR011333 -
Cla06g00536 712 MobiDBLite consensus disorder prediction 178 225 - -
Cla06g00536 712 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 284 424 IPR008974 GO:0005515
Cla06g00536 712 ProSiteProfiles BTB domain profile. 455 514 IPR000210 GO:0005515
Cla06g00536 712 MobiDBLite consensus disorder prediction 11 39 - -
Cla06g00536 712 Gene3D - 564 635 - -
Cla06g00536 712 MobiDBLite consensus disorder prediction 1 56 - -
Cla06g00536 712 SUPERFAMILY TRAF domain-like 282 421 - -
Cla06g00536 712 SMART BTB_4 455 564 IPR000210 GO:0005515
Cla06g00536 712 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 266 638 IPR045005 GO:0016567
Cla06g00536 712 CDD BACK_AtBPM-like 561 624 IPR034090 -
Cla06g00536 712 Pfam BTB/POZ domain 446 562 IPR000210 GO:0005515
Cla06g00536 712 SMART math_3 290 402 IPR002083 GO:0005515
Cla06g00536 712 CDD BTB_POZ_BPM_plant 441 561 - -
Cla06g00536 712 ProSiteProfiles MATH/TRAF domain profile. 285 419 IPR002083 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00536 K10523 SPOP; speckle-type POZ protein - csv:101216609 785.793
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla05g00586 Cla06g00536 CCT
Cla05g00586 Cla06g00536 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00562 Cla-Chr5:5143405 Cla06g00536 Cla-Chr6:6437417 4.85E-15 dispersed
Cla06g00536 Cla-Chr6:6437417 Cla09g02107 Cla-Chr9:38614185 1.47E-10 dispersed
Cla03g00313 Cla-Chr3:3746140 Cla06g00536 Cla-Chr6:6437417 2.62E-06 transposed
Cla04g00470 Cla-Chr4:17574742 Cla06g00536 Cla-Chr6:6437417 7.29E-148 transposed
Cla05g00586 Cla-Chr5:5379441 Cla06g00536 Cla-Chr6:6437417 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g416 . . Bda03g01295 . . . . . Cmo08g01149 Cmo17g00266 Cma06g01441 Cma14g01672 Car06g01243 Car14g01506 . Cpe08g00234 Cpe03g01411 Bhi01g00869 Tan10g0903 . Lac12g2339 . . Lcy11g1490 Cla06g00536 Cam06g0578 Cec06g0575 Cco06g0583 Clacu06g0565 Cmu06g0559 Cre06g1327 Cone14ag0811 Cone15ag0810 . . Lsi05g01464 . Chy11g01439 Cme06g00654 . . . . . . . . . Cmo06g01443 Cmo14g01718 Cma08g01178 Cma17g00279 Car08g01054 Car17g00254 Cpe12g00232 Cpe17g00118 Bhi12g01786 . . . . . . Cla05g00586 Cam05g0644 Cec05g0653 Cco05g0648 Clacu05g0638 Cmu05g0606 Cre05g0675 Lsi09g01366 Csa03g01380 Chy06g00622 Cme11g01944
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001625 1 3 2 1 2 2 4 2 2 2 2 2 4 2 2 4 2 4 4 2 2 2 2 2 3 2 2 2 3 2 71
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61253 PF00651 BTB 7.20E-25 CL0033 Cla TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g00536 Cla_Chr06 FPKM 6.140065 9.077503 2.862321 3.046568 10.584296 9.138015 12.89599 3.177065 3.885139 2.933334