Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00537 TTGAATCCAGCTATTGATGAATCGTCTATAGATGTGGATTTCTTCACAGAATATGGTGAAGGGAGCAGGTATAGAATAGAGGAAGTAATTGGTAAAGGAAGTTATGGTGTTGTTTGCTCTGCATATGACACTCACACTGGAGAGAAAGTTGCAATTAAGAAAATCAACGATATCTTTGAGCATGTCTCTGATGCAACTCGCATTCTCCGTGAGATAAAACTTTTAAGACTATTGAGACATCCAGACATCGTGGAGATAAAGCACATCCTTCTACCTCCATCTAGAAGGGAATTCAAGGACATTTATGTTGTGTTTGAGCTCATGGAATCTGATCTACATCAAGTTATCAAAGCAAATGATGATTTGACTCCAGAACATTATCAGTTCTTTCTTTACCAGCTTCTTCGAGGCTTGAAATACATACACACAGCCAATGTCTTCCACCGCGACCTAAAACCCAAAAACATCTTAGCAAATGCTGACTGCAAACTCAAGATCTGTGACTTTGGTCTAGCACGCGTTGCGTTTAATGATACTCCTACTGCTATTTTCTGGACTGACTATGTAGCAACAAGGTGGTACAGAGCTCCTGAACTCTGTGGTTCATTTTTCTCAAAGTATACACCAGCAATAGATATATGGAGCATTGGCTGCATCTTTGCGGAGCTTTTAACTGGAAAACCACTTTTCCCTGGAAAGAATGTCGTCCACCAATTAGATTTGATGACTGATTTTCTGGGAACCCCGAATGCAGAAGCCATTGCCAGGGTACGAAATGAGAAAGCTCGGAGATACTTAAGCAGTATGCGAAAGAAGAAGCCTGTTCCTTTCTCCCAGAAGTTTCCTCATGCAGATCCACTTGCACTTCGCTTGTTGGAAAGAATGTTGGCTTTTGAGCCAAAGGATCGACCTACAGCAGAGGAGGCCCTTGCAGATCCATATTTTAAAGGCTTAGCGAAGGTTGAGAGAGAGCCATCTGCTCAACCTGTTACTAAGATGGAATTTGAATTTGAGAGACGAAGGATAACCAAAGAAGATGTAAGGGAGCTTATTTACCGGGAGATTCTCGAGTATCATCCAAAGATGTTGAAGGAATTCTTAGATGGATCAGAACCCACTGGTTTCATGTATCCAAGTGCGGTCGACCATTTTAAGAAGCAATTTGCGTTCCTTGAGGAACACTATGGAAATGGTGCAACTGTCGCTCCTCCTGAAAGACAACATGCATCCTTGNTTTTTATATGCATTCTTGTTCAGCCATGTGTTTTATATTCAGATAACATGGTGCAGAACTCGGCCCAAGTTGCGAATGACCTATCCAAATGTTCCATCAAAGAAGTTGAGAGGCCACAAGTGGATAGGACTTGCAATATTCCTTTGGCTAGAGTTCCTATTCAAGTTCCTCAATCTATTCAAGCAGGCAATGGTGCAAGGCCTGGAAAAGTTGTTGGCTCTGTGTTGCGATACAACTGTGGAGCAACAGCAGCAGCAGTAGCACCAGAAGTTCTTGAACAGCGGAGGATGACCAGAAACCCTTCCATTCCACCACAGTACGCTGCTAATAACTGTTCATATCCAAGAAGAAACTCATCCTGTAAAAATGAAAGAACTGATGATGAAGCCATTGAAGGTCCAAACGGTTTGCAGGCAAAACCTCAGTACATAGCTAGAAAAGTTGCTGCTGCCCAAGGTGGACCAGGAAATAAC 1707 42.41 LNPAIDESSIDVDFFTEYGEGSRYRIEEVIGKGSYGVVCSAYDTHTGEKVAIKKINDIFEHVSDATRILREIKLLRLLRHPDIVEIKHILLPPSRREFKDIYVVFELMESDLHQVIKANDDLTPEHYQFFLYQLLRGLKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVAFNDTPTAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAELLTGKPLFPGKNVVHQLDLMTDFLGTPNAEAIARVRNEKARRYLSSMRKKKPVPFSQKFPHADPLALRLLERMLAFEPKDRPTAEEALADPYFKGLAKVEREPSAQPVTKMEFEFERRRITKEDVRELIYREILEYHPKMLKEFLDGSEPTGFMYPSAVDHFKKQFAFLEEHYGNGATVAPPERQHASLXFICILVQPCVLYSDNMVQNSAQVANDLSKCSIKEVERPQVDRTCNIPLARVPIQVPQSIQAGNGARPGKVVGSVLRYNCGATAAAVAPEVLEQRRMTRNPSIPPQYAANNCSYPRRNSSCKNERTDDEAIEGPNGLQAKPQYIARKVAAAQGGPGNN 569
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6447769 6456011 - ClCG06G005720.1 Cla06g00537 274729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00537 569 SMART serkin_6 24 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla06g00537 569 MobiDBLite consensus disorder prediction 512 569 - -
Cla06g00537 569 SUPERFAMILY Protein kinase-like (PK-like) 21 319 IPR011009 -
Cla06g00537 569 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 9 483 - -
Cla06g00537 569 Gene3D Phosphorylase Kinase; domain 1 39 360 - -
Cla06g00537 569 Gene3D Transferase(Phosphotransferase) domain 1 110 338 - -
Cla06g00537 569 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 9 483 - -
Cla06g00537 569 MobiDBLite consensus disorder prediction 512 530 - -
Cla06g00537 569 Pfam Protein kinase domain 24 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla06g00537 569 CDD STKc_TDY_MAPK 23 360 - -
Cla06g00537 569 ProSiteProfiles Protein kinase domain profile. 24 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla06g00537 569 ProSitePatterns Protein kinases ATP-binding region signature. 30 54 IPR017441 GO:0005524
Cla06g00537 569 ProSitePatterns MAP kinase signature. 59 162 IPR003527 GO:0004707|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g01055 Cla-Chr4:25731887 Cla06g00537 Cla-Chr6:6447769 0 dispersed
Cla06g00537 Cla-Chr6:6447769 Cla06g01427 Cla-Chr6:27853411 0 dispersed
Cla10g01339 Cla-Chr10:28372504 Cla06g00537 Cla-Chr6:6447769 3.83E-53 dispersed
Cla06g00537 Cla-Chr6:6447769 Cla02g01800 Cla-Chr2:33016138 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80623 PF00069 Pkinase 5.40E-68 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00537 - K04371 csv:101216364 1087.02