Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00539 CCACTGTCGTCAAAAACTTTCTCTTTCTTTCTCTCTAGTTTTTCCGTGTTCTTCCCGCAGCACTTTACCACCATCAATTGGCCAAACAAATCGGTTCAATCTGGCTCGAAAATGGCGGTATCTGTTCAAAATAGTCTTTGGGACAGAGTTGCGGAACTAACCAAGGTGGCTCAACAAAAGGGTGTTGATCCTCTTCTTTGGGCCATTCAGCTGTCTTCGAATTTGAACTCGGCGGGAGTCGCTTTGCCGTCAGTTGAGCTCGCTAACCTGCTGGTTTCGCAAATTTGTTGGGATAATAATGAGCCTGTTTCATGGAAGTTCCTTGAGAAGGCGTTGATGTTGAGTATTGTACCCCCGATTCTCGTTCTTGCCTTGCTCACAACCAGAGTCATTTCAAGAAGACAATTCCAGCCAGTAGCATATAGACTCTATCTGGAACTCCTTCGAAGACATGCTTTTAAACTGAAATCTCATATCCATGGCCTCAAATACGAAGAGGTCATGGCCTCTGTTGATGCTGTTCTTTGTCTTTCTGAGACATTCAATTTGCCAGCAAATGATCCTGGGACCCTTGTGGTTGAGTTTATATTTTCAATTGTCTGGCAGTTGCTTGATGCAACACTTGTTGATGAAGGGTTATTGGAACTTATTGTGGAAGAGAAATCCAAATGGCCGACAAAACCTCAAGAAATGGAACTAGATGGTCACAATGGTTATGATGATAAATGGACTGAACAACGTGAGAGATTGCGGAATGTAAACATTGAACTGACAATTGAGATAATTGGTAAATTTCTTCAAGATACGGTTACTTCAAGGATTCTTCACTTGGCTTGCAGGAATATGCCTTTGCATTGGGCGGATCTTATTCAGCGACTCCAGTTGCTGGGAGAAAATTCTTCAGTATTGAGAAACTCAAAATCTCTGAACTCAGAGATTTTTCTGCAGTTCACGTCTGATACTTGGACAATCTTCTCTCAAGAATTTAAACAAAATTCACAGCAGAAGTTCCATCCAATTAGAGCATTTGGATCTCCAGCAGCTTCTGCTAGTTTGTGTCATAGAACTCGTTATTCTGCACTTTGGCTTCCTCTCGATCTAGTTCTAGAAGATGCAATGGATGGGTATCAAGTAGAAGCAACAAGTGCTATTGAAAAAATTACTAGTTTAGTCAAAACCCTTAAGGCAATAAATGGAACTAGTTGGCATGATACCTTCTTGGGTCTCTGGATAGCAGCTCTTCGTCTTGTTCAAAGGGAAAGGGATCCCATCGAGGGGCCTGTGCCTCGCATAGACACTCGTCTATGCCTTCTATTGTGTATCACAGTCCTTGTGATTGCTGATCTGATTGAGGAGGAGGAAAGTACGACGATTGATGAAACAGAGTATGTTGCTTCCAATCACTGGAAAGAAAAAAAGGCCCCTGCAAAGTGTCGTAATGAACTAATTTCTAGCCTACAGATATTGGGGGAATATCAGAGCTTGCTGACTCCTCCTCAGGGTGTTGTCTCTGCATGCAATCAGGCGGCTGCCAAAGCAATGATGTTTATATCTGGAATCAGTGTTAGTAATGCATATTTTGAATGCATCAATATGAAAGACATGCCAATGAACTCTTCAGCTGGAAATATGCGTCATTTGATAGTTGAGGCTTGCATTGCTAGAAATCTTCTGGATACATCTGCATATTTCTGGCGAGGCTATGTGAATGGTTGCATTAGCCAAATGCCTCAAAGTATACCACCTCAGGCACCTGGTTGGTCAGCTTTCATGAAGGGGGCTCCACTTAATCATATAATGATAAATGCCTTAGCTTCAACTCCTGCTTCAAGCTCAATTATCACCCAACTTGGAGGCATGAGGCCATGTCCTTTTCCACTAGTCGTCCTCACTCCTCAGCTTGGTCCTAAGGGCCAGTCGAGGGAGGTTTTTCTCTCTGCCTCATGGGCCCCTAGCCCAATTGGGATTGGGACTGCCCTGGCCCATGGGCCGGTCTTGTGGGGTGAACTGGAGAAAATATTTGAGATAGCAGTAAAAGGATCAGATGAAGAGAAGATATCTGCAGCAACCATTCTTTGTGGGGCCTCCTTGATCCGAGGCTGGAATATTCAGGAGCATACTGTCCATTACATTACTAGGTTACTTTCTCCTCCCGTTCCCACGGATTACTCTGGATGTGAAAGTCATTTGATAGGCTATGCTCCAATGCTGAATGTGCTTATTGTTGGAATAGCATCCATAGATTGTGTTCAGATTTTTTCTCTACATGGTTTGGTTCCACAGCTCGCATGTTCACTGATGCCAATCTGTGAGGTTTTTGGTTCATGTGTGCCAAACCTCAATTGGACGTTAACTACAGGGGAAGAAATCTCTGCTCATGCCGTGTTTTCAAATGCGTTTACTCTTCTCTTAAAGCTTTGGAGATTTAACCATCCTCCTCTAGACCATGGAGTGGGTGATGCACCCACGGTCGGATCTCAACTTACTCCAGAATATCTACTTTTAGTGAGAAATTCCCATCTGGTATCTGGAAATGTCCACAGAGATCGCAATAAAATGAGACTTTCAGCTGTAGCAAGTTCCTCTTCCCCTCAACCAATATTTGTAGACTCATTTCCCAAATTGAAAGTCTGGTATCGGCAGCATCAAGCATGTATAGCGTCAACCCTCTCTGGTCATGTTCATGGCAACCCAGTTCATCAGACTGTTGATGGACTGCTTACCATGATGTTCCGAAGAATTAATGGGGGAAATCAACCGTTAACTTCAGTTACTTCTGGAAGTAGTAGTTCTTCTGGGCCTGGAAATGAAGATTCTTCTTTAAGACCCAAATTGCCTGCCTGGGATATAATGGAAGCTGTTCCGTTTGTGATTGATGCTGCTCTAACAGCCTGTGCTCATGGAAAGCTTTCTCCTCGTGAGTTGGCTACAGGACTCAAAGATCTAGCCGATTTTCTACCAGCATCTTTAGCCACAATAGTGAGCTACTTTTCTGCAGAAGTTACTCGGGGATTATGGAAACCTGTTTTTATGAATGGAACAGATTGGCCAAGCCCAGCAGAAAACCTTTCTAATGTGGAAGAGCAAATCAAGAAAATCCTAGCTGCTACTGGCGTTGATGTCCCTAGCCTAGCTGCAGGGGGAAGCTCTCCAGCTACACTTCCTCTGCCCTTAGCTGCCTTTGTAAGCCTTACTATAACCTACAAAATTGACAGAGCATCCGAACGTTTCCTCAATTTGGCTGGCCCAGCTTTGGAGTCTCTCGCAGCTGGTTGCCCATGGCCATGCATGCCAATTGTTGCTTCCTTGTGGACTCAAAAAGCCAAACGTTGGAGTGATTTCCTGGTCTTTTCAGCATCTCGTACTGTCTTCCTTCAGAACTGCGATGCCGTGGTTCAGCTGCTCAAAAGCTGCTTCACCGCCACCCTAGGCCTGACTGCCAATCCTCTCTCAAATCATGGGGGTGTTGGGGCCCTTCTTGGCCACGGATTCGGATCTCATTTCTGTGGTGGGATTTCTCCTGTTGCTCCAGGAATTCTTTTTTTACGCGTCTACCGATCAATTAGAGACGTTGCACTATTGGTTGAAGAAATTCTATCTCTTCTGATGGATTCAGTGAAAGAAATAGCTTGTAATGGTGCCCGAAAAGAGAGATCAGGGAAATTAAAGACAACCAATAATGCAAAAAGATATGGACAGATTTCACTATCTTCAGCAATGACTCAAGTAAAGCTTGCAGCTTCCCTTGGAGCTTCACTAGTATGGCTATCAGGCGGTTTAGTATTGGTTCAATCTGTGATAAAAGAAACATTGCCTTCTTGGTTCATTTCAGTTCATAGGTCTGAGCAAGAGAAATGTTCAGAGGGAATAGTTTCCATGCTTGGTGGATATGCATTAGCTTACTTTGCAGTTCTATGTGGGGCTTTTGCTTGGGGCACTGATTCTTCATCATCTGCATCGAAGAGACGTCCCAAAATCCTTGGTGTCCATATGGAGTTTCTTGCAAGTGCCCTTGATGGAAAGATATCGCTAGGATGCGATTGGGCCACTTGGCGTGCCTACGTGACTGGATTCGTTAGCCTAATGGTCGGTTGCACGCCGAGCTGGGTTCTAGATGTAGATCTAGACGTATTGAAACGATTGAGTAATGGACTGAGGCAATGGAATGAAGAAGAGCTCGCTCTTGCATTGCTTGGACTTGGTGGAGTTGGTACCATTGGCGCAGCTGCTGAACTGATTATTGAAAGTGAAACGTAA 4257 44.23 PLSSKTFSFFLSSFSVFFPQHFTTINWPNKSVQSGSKMAVSVQNSLWDRVAELTKVAQQKGVDPLLWAIQLSSNLNSAGVALPSVELANLLVSQICWDNNEPVSWKFLEKALMLSIVPPILVLALLTTRVISRRQFQPVAYRLYLELLRRHAFKLKSHIHGLKYEEVMASVDAVLCLSETFNLPANDPGTLVVEFIFSIVWQLLDATLVDEGLLELIVEEKSKWPTKPQEMELDGHNGYDDKWTEQRERLRNVNIELTIEIIGKFLQDTVTSRILHLACRNMPLHWADLIQRLQLLGENSSVLRNSKSLNSEIFLQFTSDTWTIFSQEFKQNSQQKFHPIRAFGSPAASASLCHRTRYSALWLPLDLVLEDAMDGYQVEATSAIEKITSLVKTLKAINGTSWHDTFLGLWIAALRLVQRERDPIEGPVPRIDTRLCLLLCITVLVIADLIEEEESTTIDETEYVASNHWKEKKAPAKCRNELISSLQILGEYQSLLTPPQGVVSACNQAAAKAMMFISGISVSNAYFECINMKDMPMNSSAGNMRHLIVEACIARNLLDTSAYFWRGYVNGCISQMPQSIPPQAPGWSAFMKGAPLNHIMINALASTPASSSIITQLGGMRPCPFPLVVLTPQLGPKGQSREVFLSASWAPSPIGIGTALAHGPVLWGELEKIFEIAVKGSDEEKISAATILCGASLIRGWNIQEHTVHYITRLLSPPVPTDYSGCESHLIGYAPMLNVLIVGIASIDCVQIFSLHGLVPQLACSLMPICEVFGSCVPNLNWTLTTGEEISAHAVFSNAFTLLLKLWRFNHPPLDHGVGDAPTVGSQLTPEYLLLVRNSHLVSGNVHRDRNKMRLSAVASSSSPQPIFVDSFPKLKVWYRQHQACIASTLSGHVHGNPVHQTVDGLLTMMFRRINGGNQPLTSVTSGSSSSSGPGNEDSSLRPKLPAWDIMEAVPFVIDAALTACAHGKLSPRELATGLKDLADFLPASLATIVSYFSAEVTRGLWKPVFMNGTDWPSPAENLSNVEEQIKKILAATGVDVPSLAAGGSSPATLPLPLAAFVSLTITYKIDRASERFLNLAGPALESLAAGCPWPCMPIVASLWTQKAKRWSDFLVFSASRTVFLQNCDAVVQLLKSCFTATLGLTANPLSNHGGVGALLGHGFGSHFCGGISPVAPGILFLRVYRSIRDVALLVEEILSLLMDSVKEIACNGARKERSGKLKTTNNAKRYGQISLSSAMTQVKLAASLGASLVWLSGGLVLVQSVIKETLPSWFISVHRSEQEKCSEGIVSMLGGYALAYFAVLCGAFAWGTDSSSSASKRRPKILGVHMEFLASALDGKISLGCDWATWRAYVTGFVSLMVGCTPSWVLDVDLDVLKRLSNGLRQWNEEELALALLGLGGVGTIGAAAELIIESET 1418
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6486928 6500971 + ClCG06G005740.1 Cla06g00539 274731

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00539 1418 MobiDBLite consensus disorder prediction 921 942 - -
Cla06g00539 1418 PANTHER OS07G0681500 PROTEIN 45 1415 IPR039638 GO:0016592|GO:2000762
Cla06g00539 1418 MobiDBLite consensus disorder prediction 921 938 - -
Cla06g00539 1418 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 33A 45 1415 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00539 - - - csv:101216833 2321.97
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g00539 Cla-Chr6:6486928 Cla07g00011 Cla-Chr7:127264 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g421 . . . Bda08g00388 . . . Bma05g00941 Cmo08g01146 Cmo17g00264 . . . . . . . . . . . . . . Cla06g00539 Cam06g0580 Cec06g0577 Cco06g0585 Clacu06g0567 Cmu06g0561 Cre06g1329 Cone14ag0817 . . . . . Chy11g01437 . Blo02g00645 . . . Bpe05g00752 . . . . . . Cma08g01175 Cma17g00277 Car08g01052 Car17g00252 Cpe12g00230 Cpe17g00120 Bhi12g01790 . . . . . . . . . . . . . Lsi09g01363 . . Cme11g01942
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000935 2 5 3 3 3 3 3 3 3 2 2 2 4 2 2 3 3 6 3 3 2 2 2 2 2 3 2 3 4 3 85
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g00539 Cla_Chr06 FPKM 12.220033 11.842626 15.968251 14.806554 11.888582 7.639853 12.13719 11.061499 11.969491 14.18489