Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00540 ATGCTCGTTTCTTCGATACCCAAATTCTTCACTCGACGTATTACGATTCCTCTTTATCCCAAATGGGTCTCCACCTTCTCCACAATCGGATCTTCTCCACGCCCTCTCCAGAATCTTTCCTCATTCTTCAATGGCAGACCTTCAAGCAGCTGCTTGGATTACGAGCTCTCCTTGGTCTCAGCCTTGAAGTATTGCGCGTCCAGTTCAGCCATTTTTCCGGGGCAACAAATCCATGCCATCGTCCTCAAATCTGGGTTTAACTCCAATACTTTCATTCTTAATAGCTTGATCAATATGTATGTCAAATGTGGACTTATTTCCGATGCCAGATTGCTGTTTGATTCGTGTTCTGTCTTGGATTCTGTATGTTGTAACATTATGATGTATGGGTATATAAAACTTCGCCAATTGGAGAATGCACGCCAGTTGTTCGAAAAAATGCCTGAAAGAGGCTGCGTCTCTTACACTACCATGATTCTGGGTTTGGCACAGAACGACTGTTGGAGGGAAGCAATTGAAGTTTTTAAGGATATGAGATCTGCAGGTGTGGCCCCAAATGAAGTGACAATGGCAAGTGTTATGTCAGCATGTTCACATATTGGTGATATTTGGAATTGCTGGATGCTCCATGCACTGGTAATAAAGTTACATTTCTTTGATCTCGTTCTTGTTTCGACCAATTTGTTGCACATGTATTGTGTTTGTTCAAGATTAAAGGATGCTAGGAGACTATTCAGTGAGATGCCAGTGCGTAATACTGTTACATGGAATGTTATGTTAAAAGGGTATGTAAAATCAGGTCTTGTTGATCAAGCCAGAGAGATGTTTGAGAAGATTCCAGAAAGAGATGTGATTTCTTGGGCTACAATGATTGATGGGTTTGTGCAAATGAAACGGTTAAGGGAAGCTTTGTTAATGTATTCTGCAATGAGAAAAAGTGATATGCATCCCAATGAAGTGATGATTGTTGATTTGCTTTCTGCTTGTGGGCAATCAGTTTCAATTGATGAGGGCAGGCAGTTCCACTCTTTGATAGTAAAAAATGGTTTTGTTTGTTATGATTTCATACAAGCAACTATTATTAGTTTCTATGCAGCTTGTGGAAGGATTGATCTTGCTTATTTGCAATATCAGATGAGTGATAAGAGTCATCTCACATCTTCAAATGCCCTTATTGTGAGCTTCACAAAGAACAAAATGATTGATCAAGCGAGGCAAATATTTGATATGATGCCTGAAAAAGATGTTTTTTCATGGAGCACCATGATTTCAGGTTATGCACAGAATGAGTTGCCTGATATGGCTTTAGAGCTTTTCCATGGAATGGTTGTTAGTGAAGTCGAACCTAACGAGATCACCATGGTTAGCGTTTTCTCCGCGATTGCAGCTTTAGGTAAACTACTAGAAGGAAGATGGGCCCATGAGTATGTTTGCAACAAAGCCATTCCTCTTAATGATAATTTGAGTGCTGCAATTATTGACATGTATGCCAAATGTGGAAGTATCAACACTGCCTTGGATGTGTTCCATCAGATCAGAGACAAGGCCTCTACAGTCTCGCCATGGAATGCCATCATATGTGGATTGGCGATGCACGGGCATGCGAATTTATCTCTCGAAATATTTTCCAACTTGGAAAGACGGAGTATCAAGCTCAACTCGATCACATTTCTCGGGGTTCTTGGTGCTTGTTGCCATGCTGGATTAGTCGAGCTCGGGGAGAGATACTTCTGGAGCATGAAGACGGTATATGGCGTAGAACCAAATGTTAAGCATTATGGATGTCTAGTAGATCTGTTAGGCAGGGCTGGGCGGTTAAGGGAAGCGGAGGAAACTATAAGAACCATGCCAATGAAGGCAGATGTTGTGATATGGGGCACATTATTGGCAGCCTGTAGAACACACAGGGAAGTCGAAATAGGCGAAAGAGCGGCAGAGAGTTTGGCTAGATTGGAACCATCTCACGGTCCAGGTCGAGTTCTCCTCTCCAACTTATACGCTGATGTAGGGCTGTGGGAGGATGCATCCTTGGTCAGAAGAGCAATGCAAAGTCAAAGGATGATAAGATCACCTGGGTGCAGTGGTGTTCTATGA 2094 42.26 MLVSSIPKFFTRRITIPLYPKWVSTFSTIGSSPRPLQNLSSFFNGRPSSSCLDYELSLVSALKYCASSSAIFPGQQIHAIVLKSGFNSNTFILNSLINMYVKCGLISDARLLFDSCSVLDSVCCNIMMYGYIKLRQLENARQLFEKMPERGCVSYTTMILGLAQNDCWREAIEVFKDMRSAGVAPNEVTMASVMSACSHIGDIWNCWMLHALVIKLHFFDLVLVSTNLLHMYCVCSRLKDARRLFSEMPVRNTVTWNVMLKGYVKSGLVDQAREMFEKIPERDVISWATMIDGFVQMKRLREALLMYSAMRKSDMHPNEVMIVDLLSACGQSVSIDEGRQFHSLIVKNGFVCYDFIQATIISFYAACGRIDLAYLQYQMSDKSHLTSSNALIVSFTKNKMIDQARQIFDMMPEKDVFSWSTMISGYAQNELPDMALELFHGMVVSEVEPNEITMVSVFSAIAALGKLLEGRWAHEYVCNKAIPLNDNLSAAIIDMYAKCGSINTALDVFHQIRDKASTVSPWNAIICGLAMHGHANLSLEIFSNLERRSIKLNSITFLGVLGACCHAGLVELGERYFWSMKTVYGVEPNVKHYGCLVDLLGRAGRLREAEETIRTMPMKADVVIWGTLLAACRTHREVEIGERAAESLARLEPSHGPGRVLLSNLYADVGLWEDASLVRRAMQSQRMIRSPGCSGVL 697
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6501393 6503486 - ClCG06G005750.1 Cla06g00540 274732

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00540 697 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 415 449 IPR002885 -
Cla06g00540 697 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 252 286 IPR002885 -
Cla06g00540 697 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 207 460 - -
Cla06g00540 697 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 386 694 - -
Cla06g00540 697 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 131 201 - -
Cla06g00540 697 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 53 133 - -
Cla06g00540 697 Pfam E motif 635 696 IPR046848 -
Cla06g00540 697 Pfam PPR repeat 93 114 IPR002885 -
Cla06g00540 697 Pfam PPR repeat 122 152 IPR002885 -
Cla06g00540 697 Pfam PPR repeat 254 283 IPR002885 -
Cla06g00540 697 Pfam PPR repeat 226 251 IPR002885 -
Cla06g00540 697 Pfam PPR repeat 491 514 IPR002885 -
Cla06g00540 697 Pfam PPR repeat 285 314 IPR002885 -
Cla06g00540 697 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 155 185 IPR002885 -
Cla06g00540 697 Pfam Pentatricopeptide repeat domain 541 601 IPR002885 -
Cla06g00540 697 Pfam PPR repeat family 153 198 IPR002885 -
Cla06g00540 697 Pfam PPR repeat family 414 460 IPR002885 -
Cla06g00540 697 Gene3D Tetratricopeptide repeat domain 485 693 IPR011990 GO:0005515
Cla06g00540 697 Gene3D Tetratricopeptide repeat domain 207 337 IPR011990 GO:0005515
Cla06g00540 697 Gene3D Tetratricopeptide repeat domain 38 206 IPR011990 GO:0005515
Cla06g00540 697 Gene3D Tetratricopeptide repeat domain 352 470 IPR011990 GO:0005515
Cla06g00540 697 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 120 154 IPR002885 -
Cla06g00540 697 TIGRFAM PPR: pentatricopeptide repeat domain 285 319 IPR002885 -
Cla06g00540 697 TIGRFAM PPR: pentatricopeptide repeat domain 417 451 IPR002885 -
Cla06g00540 697 TIGRFAM PPR: pentatricopeptide repeat domain 254 284 IPR002885 -
Cla06g00540 697 TIGRFAM PPR: pentatricopeptide repeat domain 122 153 IPR002885 -
Cla06g00540 697 TIGRFAM PPR: pentatricopeptide repeat domain 389 416 IPR002885 -
Cla06g00540 697 TIGRFAM PPR: pentatricopeptide repeat domain 153 187 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00540 - - - csv:105435822 1244.18
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g00540 Cla-Chr6:6501393 Cla05g01149 Cla-Chr5:12242594 2.47E-41 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g422 . . . . Bpe04g01189 . . . . Cmo17g00263 . . . . . . . . . . . . . . Cla06g00540 . . . . . . . Cone15ag0813 . . . . Chy11g01436 . . . . . . . . . . . . . Cma17g00276 . Car17g00251 Cpe12g00229 . Bhi12g01792 . . . . . . . . . . . . . Lsi09g01362 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012333 1 1 0 0 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 0 1 1 1 2 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g00540 Cla_Chr06 FPKM 16.435839 18.682571 25.656994 25.395403 17.587219 18.114573 19.073753 27.709442 26.330269 25.270906