Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00547 ATGGACAATCGCCACCATTCCATTCACTCGGATTCTGAATCGATCAAATTCCACAAGAAACTCGTAAATTTTCCTGGGGTAGGAAAAGAACGAACTCATAGAACTTGGATTCTTCGGTTTTCTACTATGGAAATGGATCGTGATGATTTGAGCGTTCGATTATCTGCTCTATGGAACATCATTGGTCTAAAGAGAAGCCTTAAAGAGGACAGAATTCCTTGCCAAATTGAAGAGGGTCTGTTCTTAGGCTCTGTTGGAGCTGCCCATAACAAAGATCAATTGAAGAAATTGAATATCACTCACATCTTAACCATTGCTTGTTCTTTGCCACCTGCTGATCCAAATGATTTTGTATGTAAAGTAGTTGGTGTCTTGGACACTAGAGATGCAGATATTAAACAACACTTTGATGATTGTTTCAATTTTATCGATGAGGGAAGACAATCTGGTGGAGGGGTCTTGATTCATTGCTTTGCTGGAATATCCAGAAGTGTAACCATTACAGTTGCCTATCTGATGAAAAAGCGTGACGACCGCAGGCAGCTCCAAATGTTGGTTTCATGGTTCAACTCAAGGACTTTGAAACAGCCCTTCAAGCTAGCAGATGATCAGATGAAACTGTCAAATGTTTTGAGTTCTAAGCAGCTGCTGGTAACCTCCTTTAACAACAGAATCAGGGGGAGAAAGAGTGGACAATCAGACAACAATGGATAA 714 40.62 MDNRHHSIHSDSESIKFHKKLVNFPGVGKERTHRTWILRFSTMEMDRDDLSVRLSALWNIIGLKRSLKEDRIPCQIEEGLFLGSVGAAHNKDQLKKLNITHILTIACSLPPADPNDFVCKVVGVLDTRDADIKQHFDDCFNFIDEGRQSGGGVLIHCFAGISRSVTITVAYLMKKRDDRRQLQMLVSWFNSRTLKQPFKLADDQMKLSNVLSSKQLLVTSFNNRIRGRKSGQSDNNG 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6643638 6648147 - ClCG06G005830.2 Cla06g00547 274739

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00547 237 Gene3D Protein tyrosine phosphatase superfamily 52 205 IPR029021 -
Cla06g00547 237 ProSiteProfiles Dual specificity protein phosphatase domain profile. 72 217 IPR020422 GO:0006470|GO:0008138
Cla06g00547 237 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE 1B 61 177 - -
Cla06g00547 237 Pfam Dual specificity phosphatase, catalytic domain 80 176 IPR000340 GO:0008138|GO:0016311
Cla06g00547 237 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 134 206 IPR000387 GO:0016311|GO:0016791
Cla06g00547 237 SMART dsp_5 72 191 IPR020422 GO:0006470|GO:0008138
Cla06g00547 237 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 73 177 IPR029021 -
Cla06g00547 237 CDD DSP 73 176 - -
Cla06g00547 237 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE 61 177 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00547 - - - bhj:120092603 265.388
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g00547 Cla-Chr6:6643638 Cla06g01782 Cla-Chr6:31232675 1.14E-16 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g434 . . . . . . . . Cmo08g01140 . . . . . . . . . . . . . . . Cla06g00547 Cam06g0590 Cec06g0587 Cco06g0595 Clacu06g0577 Cmu06g0571 Cre06g1337 Cone14ag0823 . . . . . Chy11g01429 . . . . . . . . . . . . Cma08g01167 . Car08g01045 . . Cpe17g00126 Bhi12g01806 . . . . . . . . . . . . . Lsi09g01355 . . Cme11g01934
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004089 1 2 0 2 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 1 7 3 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g00547 Cla_Chr06 FPKM 10.418699 14.619847 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0