Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00548 ATGCCCCTGCCCCACCCGCCACGCCCTCGTTGTCAACCCTACTACTTAAATTTCCATGGCTGTTCCCCATTCTCCCCTTCTTCTTCTTCTTCTTCTTCTCTTCTGTTTCTCAACCCTCTTCCATGGCGTACCTTCTCTCTGGTAATTCCACTAACCAAGGATTCCGTTACCAATCAGTATTTGGCCACTGTTTACCATGGCTCTCCGATTAAGCCTGTCCATCTCGCCGTCGATCTCGGCGGTCAGTTTCTCTGGATGGCTTGTAGTGGATCCTCTTCCATCCGCCCGATTCCCAGCCGCTCCATTCAGTGTATTGCGGCCACTGGTGGGGGTAGATCTGGGCCTGTTAGCGGCGCGTGCGATGTAATCGCTGGGAATCCGTTTGGGTATTTGGAAGGTAAGGCGATTCTGGTTGAGGATACGGTGGCGGTGAGGTCTTTGGACCGGTCAACGGCGGCGGTGATTGTTGCTCTTCATTCTTGTGTTCCGAGGTTTCTTTTACAAGGTTTGGCGAAATCTGCTAAAGGGATTTTAGGGCTTGGCCGGAATCAAATCTCGCTTCCGGCTCAGATCGCAACGGAGCTCGGTTCTCACCGGCGGTTTTCTATCTGTCTTTCATCGACGAACGGCGTCGTTTTTCCGGATAGTGGGAGTCAAGACTCTGTTTATGGATCTGAGATTTCGAGTTCTTTAACTTACACGCCGATATTGACTAAGAAAATCGACGCCTCCCAGTCGCCGGAGTATTTCATCAACGTGAAAGCCATTAAAGTCGACGGTAACCGACTCGATTTGAACAAGTCGCTGCTCGATTTAGACGGCGGAGGAACGAGATTAAGCACGGTTGTTCCGTACACTGTCTTAGAGAGTTCAATCTTTAACTCTCTGACGGCGGCTTTCAGGGCGGCAGCAGCAGCGATGAACATGAAAGAAGTAGCGCCGGTAGCGCCGTTTGAGGCGTGTTTTGAATCGGAAAACATGGAGATGACGGCTACAGGGCCAAAAGTACCGGAGATTGAACTGATTTTGCAGAGTGAGATGGTGGGATGGAAAATCAATGGAAGAAATTCAATGGTGAAGGTTAACGATGAAGCTTTCTGTTTAGGGTTTGTTGATGGTGGATTGAAGCCGAGAAACGCCGTCGTTTTCGGAGGGTATCAAATGGAGGATATCGTTCTGGATTTCGACATGGGAACTTCCATGCTCGGATTTAGCTCCTCTTTGTTGCAGAGGAAGAGATCTTGCTCGGAATTTTCGCCGGAAGATTTACTGAAAAGAACCGGATGA 1287 49.73 MPLPHPPRPRCQPYYLNFHGCSPFSPSSSSSSSLLFLNPLPWRTFSLVIPLTKDSVTNQYLATVYHGSPIKPVHLAVDLGGQFLWMACSGSSSIRPIPSRSIQCIAATGGGRSGPVSGACDVIAGNPFGYLEGKAILVEDTVAVRSLDRSTAAVIVALHSCVPRFLLQGLAKSAKGILGLGRNQISLPAQIATELGSHRRFSICLSSTNGVVFPDSGSQDSVYGSEISSSLTYTPILTKKIDASQSPEYFINVKAIKVDGNRLDLNKSLLDLDGGGTRLSTVVPYTVLESSIFNSLTAAFRAAAAAMNMKEVAPVAPFEACFESENMEMTATGPKVPEIELILQSEMVGWKINGRNSMVKVNDEAFCLGFVDGGLKPRNAVVFGGYQMEDIVLDFDMGTSMLGFSSSLLQRKRSCSEFSPEDLLKRTG 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6660753 6662606 + ClCG06G005840.1 Cla06g00548 274740

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00548 428 SUPERFAMILY Acid proteases 52 409 IPR021109 -
Cla06g00548 428 Pfam Xylanase inhibitor C-terminal 248 405 IPR032799 -
Cla06g00548 428 Gene3D Acid Proteases 44 214 IPR021109 -
Cla06g00548 428 Pfam Xylanase inhibitor N-terminal 60 209 IPR032861 -
Cla06g00548 428 ProSiteProfiles Peptidase family A1 domain profile. 60 405 IPR033121 -
Cla06g00548 428 PANTHER BASIC 7S GLOBULIN 2 SMALL SUBUNIT 45 418 - -
Cla06g00548 428 PANTHER ASPARTYL PROTEASE-RELATED 45 418 IPR001461 GO:0004190|GO:0006508
Cla06g00548 428 Gene3D Acid Proteases 222 420 IPR021109 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00548 - - - csv:101211706 681.789
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla05g00576 Cla06g00548 CCT
Cla05g00576 Cla06g00548 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g00548 Cla-Chr6:6660753 Cla11g00648 Cla-Chr11:7437830 7.42E-11 dispersed
Cla05g00576 Cla-Chr5:5259201 Cla06g00548 Cla-Chr6:6660753 2.28E-83 wgd
Cla06g00548 Cla-Chr6:6660753 Cla09g00638 Cla-Chr9:6038383 1.22E-64 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g435 . . . Bda08g00393 . . . Bma05g00947 Cmo08g01139 Cmo17g00254 Cma06g01431 Cma14g01678 Car06g01233 Car14g01512 Sed02g1268 . Cpe03g01416 Bhi01g00856 Tan10g0884 Cmetu06g0140 Lac12g2324 Hepe05g1524 . Lcy11g1509 Cla06g00548 Cam06g0591 Cec06g0588 Cco06g0596 . Cmu06g0572 Cre06g1338 Cone14ag0824 . . . Lsi05g01453 . Chy11g01428 Cme06g00642 . . . . Bpe05g00750 . . . . Cmo06g01434 Cmo14g01723 Cma08g01166 Cma17g00268 Car08g01044 Car17g00242 Cpe12g00223 Cpe17g00127 Bhi12g01808 . . . . . . Cla05g00576 Cam05g0632 Cec05g0642 Cco05g0637 Clacu05g0628 Cmu05g0596 Cre05g0664 Lsi09g01354 Csa03g01368 Chy06g00611 Cme11g01932
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009272 1 1 1 2 0 1 2 1 1 1 1 0 2 1 1 2 1 1 3 1 1 1 1 1 1 1 1 2 1 0 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g00548 Cla_Chr06 FPKM 25.524179 30.448221 38.69276 42.082737 21.067503 21.981009 19.783989 19.447029 18.166914 17.982416