Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00552 ATGGCCGATTTCACTTCTTCTTCCTCTCAGAATCCCAATGCTGTTTCAGCTTCCGCTGCTTCCGATGATGCTTTTGATGACGCTTGCTGTATTTGCCTCGACCCATTTACCTCCGATGATCCCGCCACTATTACCAGTTGCAAGCATGAATATCATCTCCAATGTATTCTTGATTGGTCTCAAAGAAGCAATGAATGCCCAATCTGTTGCCAGTTGCTAGTGTTGAAGGACCCTGTTGGCCAGGAGCTTCTAGCAGCCATGGCTAGTGAAAGGCTTTTAAAGTCGAGAAGCTTGTCTTCTGCTGCATCCACTTCTTTGCGTTTCCACGAAAACTTTGATATTGATCACGACTCCGCTCACTCGGATGACTCTGACTTTGATGACCTGATTATGCAGCATCTTGCTGCTGCAGCTAGCAGAGCACGGTATGTTCAAAGAAGGGAGAGGCAAAGACATTTTGGACTTGGGCCTTCAGAAGTTACCTCTGGATGTCCAGAAGAGATTCCTATGTCACCACGATTTCAAGATGCAACTCCAACTTCACCTAATAGTGATTCACCATCTCCTGGTTCCCCGTTGTCATCTGTTGGCCGCACCGGAATTAGTAAAGTCTCGCCTAGGGTTATACTGTTGCCACTGTCTGGTTGTCAACAAAAAACAAACCAATCTGAGGGGTTCTCTTTCCCAGATTCCATCAAATCCAAATGGTCTGCTACTTCTGCGAAGTACAGGGAGTCAATCTTGCGAAGCACTCAAGGTATTAAGGAGAAACTACTTGCTCGTAACAGCTCAGTGAAGGAGCTAAGCAGAGGAGTAAAGCGTGAAGTGAGTGCTGGGATTGCTGGCGTTGCTCGAATGATTGATCGCCTAGATATGACTTCAAAAAGGAATGCTACTTCTATTTCCTTCTTCAGCTGCAGTGGGGGTACATCAAACTCCTTGAAAGGAAAGAACGTTGTGCAAGAGAGTGCTGTCACTGATGGTTCAGTTAAAATTGATAGAATATCTACTGGTTCACCTTCACAGGTTTCCCCTACTGTTCCACGCTCCGTCGAAGCTTCTTTAGCTCAGGTACTTCACTTTATGTCATTGGACATATTCAACACAAACCAGCATCAAGCTAATACCTGTTTTGCTTAA 1140 45.35 MADFTSSSSQNPNAVSASAASDDAFDDACCICLDPFTSDDPATITSCKHEYHLQCILDWSQRSNECPICCQLLVLKDPVGQELLAAMASERLLKSRSLSSAASTSLRFHENFDIDHDSAHSDDSDFDDLIMQHLAAAASRARYVQRRERQRHFGLGPSEVTSGCPEEIPMSPRFQDATPTSPNSDSPSPGSPLSSVGRTGISKVSPRVILLPLSGCQQKTNQSEGFSFPDSIKSKWSATSAKYRESILRSTQGIKEKLLARNSSVKELSRGVKREVSAGIAGVARMIDRLDMTSKRNATSISFFSCSGGTSNSLKGKNVVQESAVTDGSVKIDRISTGSPSQVSPTVPRSVEASLAQVLHFMSLDIFNTNQHQANTCFA 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6735276 6738831 - ClCG06G005890.1 Cla06g00552 274744

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00552 379 MobiDBLite consensus disorder prediction 150 199 - -
Cla06g00552 379 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHF1A 1 334 - -
Cla06g00552 379 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 73 IPR013083 -
Cla06g00552 379 SMART ring_2 29 69 IPR001841 -
Cla06g00552 379 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 334 - -
Cla06g00552 379 SUPERFAMILY RING/U-box 26 76 - -
Cla06g00552 379 MobiDBLite consensus disorder prediction 174 199 - -
Cla06g00552 379 ProSiteProfiles Zinc finger RING-type profile. 29 69 IPR001841 -
Cla06g00552 379 Pfam Ring finger domain 28 69 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00552 K19043 RHF; E3 ubiquitin-protein ligase RHF [EC:2.3.2.27] - csv:101219674 538.495
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g00552 Cla-Chr6:6735276 Cla10g01720 Cla-Chr10:32988877 1.35E-51 dispersed
Cla06g00552 Cla-Chr6:6735276 Cla01g00249 Cla-Chr1:2527795 1.32E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g449 . . . . . Bpe14g01314 . . . Cmo17g00251 . . . . . . . . . . . . . . Cla06g00552 Cam06g0595 Cec06g0593 Cco06g0600 Clacu06g0581 Cmu06g0576 Cre06g1342 Cone14ag0830 . Cone7ag0224 Cone4ag0215 . . . . . . . . . . Bma02g00689 . . . . . Cma17g00263 . Car17g00237 Cpe12g00219 . Bhi12g01814 . . . . . . . . . . . . . Lsi09g01347 . . Cme11g01927
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005314 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 2 3 1 1 1 3 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g00552 Cla_Chr06 FPKM 0.0 0.0 0.0 0.0 0.176372 0.0 0.196121 0.0 0.093338 0.0