Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00556 ATGAATATCTTTGTGGGACCTCCGAAAGGCTCACCAAACGCAGTCGTGTTGGCGGTAGCCATTGATCTCCCATTTCGACCCCTTTTCTTCTTCTCCAACAATGGCGAAAACCCAACTCTGTTTTCTTCTCCCTTTGCTTCTTGCTTCCATCTTCGTCTCCAATCACCCTGTCAAATGCGACGATCTCGATTTACCATGCATTGTCATTTGAGATCTGGGTTCGTCAATGATCGTTTAGATGCTGGGGTTTTGTGTTCTTGGGAGATTCTAGACCTTACAAGCATTGTTCATTATTTGGTTGCTTTCTTAGATAGATTTCTGGGAGCTGACTCTCTCTGGGAGTGTTCAGAAAATAGAAGAGAGGGCAGCTCCTTTAAATCCATTATGTTTGATTTCCAATCTCCCTTTATAGACACAGATGATGATCTTCATAGAGGCATCAACAGTTATCGTGCGTCCTTGAACTTGACAGCGCTGGTCGAGAACGACAATGCAGACTGCCTTGCTGAAGAAATTGCTGACAAATTCAAGAATGAACCTTGTACAAACACCACAGGTTCCAACACAATATCTGGAACAGAACCTCAGTTTTCTGATTTTCCAAACCTATTAGCCAAATGCAAATTGAATATCTCCAACACAAGAGATGGAACCATAATGCCTGCTTGTGTTCCAAACCGTGTTGCTGATCTTGTTCTCACTAACTTCACAAAATCTCAGTACTCAGGTAAACTTAACGATACCAAGTACACTGGAATCGGCATCGGTACTGAAGACGACTGGGTCGTCGTTGTTCTTACCACCAGCACAGCAGAAGGAAGTTTTGCGCCAGCAGTAGGATCATCAGCCACTCTCGTTTCTAAGATTGGTTTGTTCTCTCAGTTGCTGTTCTTGATTCTTTCCTTTGTCTTACTGTTGTGA 921 43.21 MNIFVGPPKGSPNAVVLAVAIDLPFRPLFFFSNNGENPTLFSSPFASCFHLRLQSPCQMRRSRFTMHCHLRSGFVNDRLDAGVLCSWEILDLTSIVHYLVAFLDRFLGADSLWECSENRREGSSFKSIMFDFQSPFIDTDDDLHRGINSYRASLNLTALVENDNADCLAEEIADKFKNEPCTNTTGSNTISGTEPQFSDFPNLLAKCKLNISNTRDGTIMPACVPNRVADLVLTNFTKSQYSGKLNDTKYTGIGIGTEDDWVVVVLTTSTAEGSFAPAVGSSATLVSKIGLFSQLLFLILSFVLLL 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6758042 6760271 + ClCG06G005930.2 Cla06g00556 274748

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00556 306 PANTHER OS07G0645000 PROTEIN 136 306 - -
Cla06g00556 306 PANTHER OS07G0645000 PROTEIN 136 306 IPR045285 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00556 - - - csv:101217896 276.174
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g01627 Cla-Chr3:32148890 Cla06g00556 Cla-Chr6:6758042 6.12E-36 dispersed
Cla06g00556 Cla-Chr6:6758042 Cla02g01561 Cla-Chr2:30287690 1.10E-44 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g452 . . . . . Bpe14g01311 . . . Cmo17g00247 . . . . . . . . . . . . . . Cla06g00556 Cam06g0597 Cec06g0595 Cco06g0602 Clacu06g0583 Cmu06g0578 Cre06g1344 . . Cone7ag0227 Cone4ag0217 . . . . . . . . . . . . . . . . Cma17g00260 Car08g01040 Car17g00234 Cpe12g00216 Cpe17g00133 Bhi12g01817 . . . . . . . . . . . . . Lsi09g01343 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008559 1 1 2 0 1 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g00556 Cla_Chr06 FPKM 15.451992 18.06102 14.298913 14.566052 20.515659 21.195827 20.564253 17.179758 15.829404 15.371897