Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00558 ATGCAAGATTTCTTCGGATCTGTTCGTCGATCCTTAGTATTTCTAGCTCCCGACGGTGACGACGGTGGGAGGTTCGGTGGCCTTGTCGAGAAGATCGGCTCTAGCATCCGTAAATCTCGAAATGGACTGTTTTCTAAACAGTCACTGCGGGCTCTGCCTCCGGTTGCGAAGGAAGATGCACCTCCGATTTGGTGGCGGAAGGGAGAGTTGATCGGATGTGGTGCTTTTGGTCGAGTTTATATGGGGATGAATCTCGATTCTGGAGAGCTTCTTGCAGTCAAACAAGTCTCAATTGCGGCTAATAGTGCTTCAAGGGAGAAAGCCCAAGCTCACATACGGGAGCTGGAGGAGGAAGTGAGGCTTTTGAAGAATCTTTCTCACCCCAATATTGTGAGATATCTGGGAACTGCAAGAGAAGAAGATTCATTAAATATTCTATTGGAGTTTGTTCCTGGAGGATCAATATCTTCTTTGTTAGGGAAATTTGGGTCTTTCCCCGAGTCTGTTATAAAGACCTACACTAAGCAGCTATTATTGGGGCTTGAGTACCTTCATAAGAACGGCATCATGCATAGGGATATAAAGGGTGCAAATATTCTTGTAGACAATAAGGGGTGTATTAAACTTGCAGATTTTGGTGCATCCAAGAAAGTGGTTGAGCTGGCAACTATAAATGGAGCCAAATCAATGAAGGGTACTCCATATTGGATGGCTCCTGAAGTTATTCTCCAGACTGGACATAGCTTCTCTGCTGATATATGGAGTGTGGGGTGTACTGTTATTGAAATGGCAACAGGGAAACCTCCATGGAGCCAACAGTATCAAGAGGTCGCTGCTCTTTTCCATATAGGAAATACTAAGTCCCATCCGCCCATTCCTGAGAATCTATCTGCTGAGGCTAAAGATTTTCTGTTAAAATGTCTACAAGAGGAACCAAACTCAAGGCCTACTGCATCAGATTTGCTGCAGCATCCATTTGTCTCATGTGAGTATCAAGAACCTGTTGCAGTAGTCCTTGCCTCTTCTGTGGAATCTGGGAAACAGATGGCTGATTCTAGGCTGAACTCCAATGATCTTAAAAAGTCTACAATCCAACGTTCAACCTGTGAGGGCTTGAAAGATATTTGTGAAATGGGTAGCTTGAGGTGCTCTTCTGTATTTTCTGGGAACTATGGGTCACAGTCCAACTGGGGCTCGAGCAATTTTGAGGATGACATGTGCCAGATAGATGATAAAGATCTGTTTGTTAGTTCATCAATTAAGTACAAATCTATTTTATCATCAACTGATTTGAATAAGAGTTTCAATCCTATGTGTGAACCCACTGATGACTTGGATGAGAGCTCAGAGTTGGGAGGCAATTTAATGGAATTGTCTGGCGTTCAAACTGGCAAGGGGAGTGACTTCACTTTTCCTTGTGGTCAATCAGCAGCTGAGGATGATGAAGAGGTTACGGAATCAAAGATTAAAGCCTTCCTGGATGAGAAGGCTCTAGAACTAAAGAAGCTGCAAACACCTTTATACGAAGAGTTCCGTAGCACAGTTAATGCAGCTAATGCATTAGGAACAGTTGGAATTGAGAATATCAAGAGCGTGTCTAAGTTTTTGAAATTGCCTCCCAAATGTGGGTCACCAAGTAAGCTGCGTGGTAAAAGACTCTCATCAATTGATGCTGGTAACTGTTCCAGCCGTCAGAGCCGTATAAAACAAGCTGGCATATTGCAAGATCGAGCTTTGCAGGAAATTCAGTCGCCACAACTTGGGGAATGGAACAACTTACTTCAAACCCAGCCAGACTCTTCTACACCAAGTTTCTCTGAAAGACAAAGGAAATGGAAAGAAGAGCTTGAGGAAGAACTTAAAAGGAAACGAGGTGGTGAAATTCCCTCCCTCCCTTGTCAACCAAGTATTAACCTCTTTGGGAGGGTTGCCCTTAGGTCAAAGCCACTTTATTCTCAGGGTGGAAGTAGGGAAACTGAGTCTACGTTGTCTCAAATGATTCCCCCTAAACAAGGAGTTCCTATTATGATAAATATGGATTCTTGCAAAGACCCAATACCTTCTCTGGCTCAACTATCCACTTGA 2085 43.6 MQDFFGSVRRSLVFLAPDGDDGGRFGGLVEKIGSSIRKSRNGLFSKQSLRALPPVAKEDAPPIWWRKGELIGCGAFGRVYMGMNLDSGELLAVKQVSIAANSASREKAQAHIRELEEEVRLLKNLSHPNIVRYLGTAREEDSLNILLEFVPGGSISSLLGKFGSFPESVIKTYTKQLLLGLEYLHKNGIMHRDIKGANILVDNKGCIKLADFGASKKVVELATINGAKSMKGTPYWMAPEVILQTGHSFSADIWSVGCTVIEMATGKPPWSQQYQEVAALFHIGNTKSHPPIPENLSAEAKDFLLKCLQEEPNSRPTASDLLQHPFVSCEYQEPVAVVLASSVESGKQMADSRLNSNDLKKSTIQRSTCEGLKDICEMGSLRCSSVFSGNYGSQSNWGSSNFEDDMCQIDDKDLFVSSSIKYKSILSSTDLNKSFNPMCEPTDDLDESSELGGNLMELSGVQTGKGSDFTFPCGQSAAEDDEEVTESKIKAFLDEKALELKKLQTPLYEEFRSTVNAANALGTVGIENIKSVSKFLKLPPKCGSPSKLRGKRLSSIDAGNCSSRQSRIKQAGILQDRALQEIQSPQLGEWNNLLQTQPDSSTPSFSERQRKWKEELEEELKRKRGGEIPSLPCQPSINLFGRVALRSKPLYSQGGSRETESTLSQMIPPKQGVPIMINMDSCKDPIPSLAQLST 694
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6766067 6770174 + ClCG06G005950.2 Cla06g00558 274750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00558 694 CDD STKc_MAPKKK 65 327 - -
Cla06g00558 694 ProSiteProfiles Protein kinase domain profile. 65 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla06g00558 694 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 47 549 - -
Cla06g00558 694 ProSitePatterns Serine/Threonine protein kinases active-site signature. 189 201 IPR008271 GO:0004672|GO:0006468
Cla06g00558 694 PANTHER MAP KINASE KINASE KINASE 47 549 - -
Cla06g00558 694 Gene3D Transferase(Phosphotransferase) domain 1 65 368 - -
Cla06g00558 694 ProSitePatterns Protein kinases ATP-binding region signature. 71 94 IPR017441 GO:0005524
Cla06g00558 694 Pfam Protein kinase domain 66 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla06g00558 694 Coils Coil 98 125 - -
Cla06g00558 694 SUPERFAMILY Protein kinase-like (PK-like) 65 328 IPR011009 -
Cla06g00558 694 SMART serkin_6 65 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01554 Cla-Chr2:30214044 Cla06g00558 Cla-Chr6:6766067 0 dispersed
Cla06g00558 Cla-Chr6:6766067 Cla08g01536 Cla-Chr8:28087275 3.58E-54 dispersed
Cla09g01020 Cla-Chr9:10720401 Cla06g00558 Cla-Chr6:6766067 3.94E-49 dispersed
Cla10g01130 Cla-Chr10:25779495 Cla06g00558 Cla-Chr6:6766067 1.23E-50 dispersed
Cla06g00558 Cla-Chr6:6766067 Cla01g00446 Cla-Chr1:4840377 1.69E-80 transposed
Cla06g00558 Cla-Chr6:6766067 Cla05g00892 Cla-Chr5:8826684 1.78E-80 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80624 PF00069 Pkinase 4.00E-73 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00558 - K20606 csv:101217427 1164.83