Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00561 ATGTGGGAGTTGCGACCATTTCAAAGCGACCTTCTCGCGAAAACCCCAGGGCCAGGCAAATCTGTTTCCTCACAGGGGAGAGAGAGCGATGACGATGGCGATACCAGGGAGCATTGTCGTTGTTCTTCTCCTTATGTTGCTTCTCATCATCCTCCTCCTCCTCATTGCCTGCAAACCATGGCGTTTCTTTTCCTATTCCCGTTCTCGCACAATCAAGAATTTGAATTGGAATTATATGAATTCTTGTTTCGTTTGGTTTGGCCAATGTTGTTTGTGGATTGCACTTTGGTTCCTGACCTTGAGAGACCCCTTGTCTCTGATGCTGCAGATGTCACTCAAAACCAATTCAGTGAGGTTCCCAGAGATTATGATCTGGAGGGTGCACTTCAAACTGATGGACATTTTCGGTCCCCGAGATTACATGGACTGATTCATAAACAAAGACTGCCACCTTTGTCTCCCCATTCAAGTCAGGGTGATAGATTGGTTCCAGATGTAGTTCCCGATCCTTTGGAAGTTATTTCAGTTGGTCAAACCCTTAAACGTACTTACTTTGCTAACCAGATTCCAGAAGTTCAAAAGCATGCAAAACTGAGCCTAGGAAGTGATCAACTCCACGAAATTGCAAGTCAAGATATCTCACATGGAAGAAGTTACCTCACTTTGGAGGTCACCTCCGGTCCTTCTCGTGGAGTGCGTTATTCAATTCATTCTGCAAACACGTCTAGGCTTCCTTTGACTCTTGGAAGAGTACCTCCTAGTGATTTACAGTTGAAGGATTCCGAAGTCTCAGGGAAGCATGCCTTGATAAAATGGAATCTAAATAATATGAAATGGGAGCTTGTGGACCTGGGTAGCTTAAATGGGACCTTATTAAATTCTCAACCAATCAACAATCCTGATTCTGGAAGTAGACATTGGGGTGACCCAGTTGAGCTTACGAGTGGAGATGTTATAACTCTTGGTACAACCTCCAAAGTGTATGTTCATATTACATCTCAGATTGAGAACCATATTCCCTTTGGAGTTGGTTTGGCTTCAGATCCAATGGCTTTACGTCGTGGTGGAAAGAAGCTTGCCATGGAAGATGTTTGCTATTATCATTGGCCTCTTCCTGGGGTTGCTCAGTTTGGACTCTTTGGTATCTGCGATGGGCATAGTGGAGTAGGGGCTGCCAAATCTGCTAGCGAGATTCTTCCGGAGAAGGTTGCCAAAATTCTATCTGATCCACTGAAAAGGGAGACGGTAGTATCTCTTCGTGATGCTTCAGATGTTCTTAGAGAAGCATTTTCTCAGACTGAGGCTTGCATGAATCACTATTATGAGGGTTGTACTGCCACGGTGCTTTTAGTATGGGCTGATAGTGAGGAAAATTACTTTGTGCAATGTGCGAACGTTGGGGACTCTGCTTGTGTTCTCAATGTTCATGGGAAGCAGATGAAGATGACAGAAGATCACAGAATAACTAGCTATTCAGAGAGACTCCGAATAGAACAAGCAGGAGAACCATTGAAAGATGGGGAGACACGTTTGTGTGGCTTGAACCTTGCAAGGATGCTTGGTGACAAGTTTCTTAAACAACAAGACCATCGTTTCAGTTCAGAACCTTATATAAGTGAAGTTGTCCATGTAGATCAAGGAAGCAAAGCTTTTGCAGTGATGGCAAGTGATGGCTTTTGGGATGTGATTGGTGTGAAGAAGGCAATTCAGCTGGTTCTTCAGGCTAGGGAGAAATACTCCACAAGTGCAGAAAATTCAGCCGAAAAGGTTGCGAATTTTTTGTTGGGGGAGGCTAGAACACTGCGTACAAAAGATAATACATCCATAATTTTCTTAGATTTTGAGGTTTCTCATAGAATCACTTGTAAAGTTGAACCATAA 1881 43.59 MWELRPFQSDLLAKTPGPGKSVSSQGRESDDDGDTREHCRCSSPYVASHHPPPPHCLQTMAFLFLFPFSHNQEFELELYEFLFRLVWPMLFVDCTLVPDLERPLVSDAADVTQNQFSEVPRDYDLEGALQTDGHFRSPRLHGLIHKQRLPPLSPHSSQGDRLVPDVVPDPLEVISVGQTLKRTYFANQIPEVQKHAKLSLGSDQLHEIASQDISHGRSYLTLEVTSGPSRGVRYSIHSANTSRLPLTLGRVPPSDLQLKDSEVSGKHALIKWNLNNMKWELVDLGSLNGTLLNSQPINNPDSGSRHWGDPVELTSGDVITLGTTSKVYVHITSQIENHIPFGVGLASDPMALRRGGKKLAMEDVCYYHWPLPGVAQFGLFGICDGHSGVGAAKSASEILPEKVAKILSDPLKRETVVSLRDASDVLREAFSQTEACMNHYYEGCTATVLLVWADSEENYFVQCANVGDSACVLNVHGKQMKMTEDHRITSYSERLRIEQAGEPLKDGETRLCGLNLARMLGDKFLKQQDHRFSSEPYISEVVHVDQGSKAFAVMASDGFWDVIGVKKAIQLVLQAREKYSTSAENSAEKVANFLLGEARTLRTKDNTSIIFLDFEVSHRITCKVEP 626
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6804192 6810938 + ClCG06G005970.2 Cla06g00561 274753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00561 626 Gene3D - 349 617 IPR036457 -
Cla06g00561 626 ProSiteProfiles Forkhead-associated (FHA) domain profile. 246 297 IPR000253 GO:0005515
Cla06g00561 626 CDD FHA 220 328 IPR000253 GO:0005515
Cla06g00561 626 Pfam Protein phosphatase 2C 355 607 IPR001932 -
Cla06g00561 626 PANTHER PROTEIN PHOSPHATASE 2C 92 625 IPR015655 GO:0004722|GO:0006470
Cla06g00561 626 ProSiteProfiles PPM-type phosphatase domain profile. 342 614 IPR001932 -
Cla06g00561 626 SUPERFAMILY PP2C-like 355 614 IPR036457 -
Cla06g00561 626 MobiDBLite consensus disorder prediction 1 38 - -
Cla06g00561 626 CDD PP2Cc 354 614 IPR001932 -
Cla06g00561 626 PANTHER PROTEIN PHOSPHATASE 2C 70 92 625 - -
Cla06g00561 626 SMART PP2C_4 336 612 IPR001932 -
Cla06g00561 626 SMART FHA_2 245 297 IPR000253 GO:0005515
Cla06g00561 626 Gene3D - 214 348 - -
Cla06g00561 626 Pfam FHA domain 247 322 IPR000253 GO:0005515
Cla06g00561 626 SUPERFAMILY SMAD/FHA domain 219 330 IPR008984 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g00561 Cla-Chr6:6804192 Cla05g01655 Cla-Chr5:28135087 6.18E-19 dispersed
Cla06g00561 Cla-Chr6:6804192 Cla06g00403 Cla-Chr6:4945314 4.90E-15 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00561 K01090 - csv:101217195 980.704