Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00562 ATGAATATGGCTCATCTCGACACCGACCTCCCTTCCCTCGACCATCTTCATTCCACCAAGTCCCTCATCTCTGCTCTCAATTTACTTTCCCGGAATCTTCCTCTTCCTCCCGACCTCTTTGAAGCTGTTTCTTCCATTTATTCCGCTCCTCACCACCAGGATCCCACTCCTCTCATTGATACGGAGGAGGAGGAGTTTAGAAATTCTGTTCAAGAAAATCTATTGACTGACCTTGGTGATGCTTTGGCAAAGCAACGTTCGAATTATGTATCTGGTTCTGGATTGGAACAGTCGAGAGAAGAGCGGTATCGAGGTCGTGTACGACAGCGGTTGAATGATTTAGAAGAATTACCTTCAAGTAGAGGGGAAGACTTACAGACAAAGTGCTTGCTTGAACTGTGTGGATTAAAGTTACTAGATTTGCAAAAAAAGGTACGATCTGATGTGAGTTCAGAGTACTGGCTTCAAGCAACTTGTGCATATCCAGACAAACAATTATTTGATTGGGGCATGATGCGATTGCACCGTCCACCATATGGTGTAGGCGATGCTTTTGCCATGGAAGCTGATGATCAATTGCGGAAGAAGCGAGATGCTGAGAGGACATCAAGGTTAGAAGAAGAGGAGAAGAACCAAATTGAGACTAGGAAAAGAAAATTTTTTGCTGAGATACTGAATGCTGTACGTGAATTCCATTTACAAATTCAAGCTTCTATAAAACGTCGGAAACAGAGAAATGACGGAATACAGGCATGGCATGGAAGACAAAGACAACGTGCTACAAGAGCAGAAAAACTGAGGTTCCAAGCACTAAAGGCAGATGATCAAGAAGCTTACATGAGATTGGTTAAGGAGAGCAAGAATGAACGATTAACAACACTTCTTGAAGAAACAAACAAACTACTTGTTAACTTGGGTGCTGCCGTTCAAAGACAGAAAGATTCTAAACTCTCTGATGGCATTGAGACCTTGGATGAATCTGATGTTGATTTAACTGAGTTGGATTCTTCAAAGAATGCAACCCCTCAAGATCTACTTATAGATGAAGATCTAGATGCCATTGATTCTGACCGAAATGATGAAAGTGGTGATTTGCTTGAAGGACAGCGACAATATAACTCTGCCATTCATTCAATTCAAGAAAAGGTCACTGAACAGCCTACCATGCTACAAGGAGGAGAATTGAGGCCCTACCAAATAGAAGGACTTCAGTGGATGCTTTCATTATTCAATAACAATTTAAATGGAATATTGGCCGATGAAATGGGGCTGGGAAAAACAATACAAACAATCTCATTGATTGCTTACCTCATGGAATACAAGGATGTGACTGGACCTCATTTAATAGTTGCTCCCAAGGCAGTACTGCCAAACTGGATTCATGAATTCACAACATGGGCCCCAAGTATCGCTGCTGTTCTTTATGACGGACGTCAAGAGGAGAGAAAAGCTATAAAGGAGGAGCTACTGAGTGAAGGAAAATTTTGTGTCTTGATTACACATTATGATCTCATTATGAGAGATAAATCATTTTTGAAGAAAATACACTGGTATTATATGATTGTTGATGAAGGCCATCGGCTAAAAAATCGTGAATGTGCTCTTGCACAGACACTTGCAGGCTACCAGATCAAACGTAGACTTCTCTTAACTGGTACACCTATCCAGAACAGTTTGCAGGAACTATGGTCCCTGCTTAATTTTCTCCTGCCGCATATATTTAATTCTGTCCAGAACTTCCAGGAGTGGTTTAATGCACCATTTGCAGATCGGAGTGATGTTACTCTGACAGATGAAGAGGAGCTATTGATCATTCGCCGTCTGCATCATGTTATTAGGCCATTCATATTGAGGAGGAAAAAGGATGAGGTGGAAAAGTATCTACCTGAAAAGTCACAAGTCATACTAAAATGTGATATGTCAGCATGGCAGAAAGTATACTATCAACAAGTCACTTCTATTGGCAGAGTGGACACTGGTTCTGGCAAATCAAAGTCCCTACAAAATTTAACGATGCAACTGAGGAAGTGTTGTAATCATCCATATCTTTTTATTTTGGGAGATTATAATATTTGGCGTAAGGAGGAGATTGTCAGAGCTTCTGGGAAATTTGAACTACTGGATCGTTTACTCCCAAAGCTACATAGAGCTGGGCATAGAGTCTTGCTTTTCTCACAAATGACTCGTCTTATGGACATTCTTGAAATTTATCTTCAGCTCCACGAGTTTAGATATCTTCGACTTGATGGTTCAACGAAAACTGAAGAAAGAGGGGCTTTAGTGAAGCAATTTAATGCTCCAGACTCCCCATTCTTCATGTTTCTCTTGAGTACCCGGGCTGGTGGTTTAGGTTTGAACTTACAAACTGCGGACACTGTTATTATCTTTGACAGTGATTGGAATCCTCAAATGGACCAGCAGGCAGAGGATCGAGCTCACCGTATTGGACAAAAGAAGGAAGTAAGGGTGTTTGTCCTGGTTAGTGTTGGATCAGTTGAAGAGGTTATCCTGGAGCGTGCAAAACAGAAGATGGGGATCGATGCCAAGGTTATCCAGGCTGGACTTTTTAACACAACTTCAACAGCTCAAGACCGAAGAGAGATGTTAGAGGAGATTATGCGCAGAGGAACTAGCGCACTTGGCACTGATGTGCCAAGTGAGAGAGAAATCAATCGCCTTGCAGCTCGATCAGATGAAGAATTTTGGTTGTTTGAGAAAATGGACGAAGAAAGAAGACAGAAGGAGAAATATAGATCTCGTTTGATGGAAGAACATGAGGTACCTGAGTGGGTATATTCAGTACCTGACGGTAATGAAGAGAAGAACAAGGGTTCAGAAATTTTCGGCGTCGCTGGAAAACGAAAAAGAAAGGAGGTGATTTATGCCGATACACTGAGTGATTTGCAGTGGATGAAGGCTGTAGAAAATGGAGAAATTCCAAGCCTTTCAATGAAAGGAAATAGAAGAGAGACTCCCTCACGTGAAGGCAGTGCATCAACCAGCAACATTACCAACACAAGGGCAGAGGATAAGCTAATAGAATTTGATGATAATGTACCTGTAATGAGTGAGGGAACAAGTGAAGACAATTCTGGTTTAGAAGCAACCCCAAAGAGACAAAAGTCTGAAGCTGTAAGTATTAGGAAACACGAATTCCTTTCCGAGTCAGGAACTGAATGGAGTCGTTGTGTAATAACATGGAAAACACACAAGAAGAAGCGGTCGAGCTATGTCCAAGGTTCTTCGGATTCTAGACATAACTCCAATGGAAGAGGGAACGGATGGGCTTGA 3291 41.75 MNMAHLDTDLPSLDHLHSTKSLISALNLLSRNLPLPPDLFEAVSSIYSAPHHQDPTPLIDTEEEEFRNSVQENLLTDLGDALAKQRSNYVSGSGLEQSREERYRGRVRQRLNDLEELPSSRGEDLQTKCLLELCGLKLLDLQKKVRSDVSSEYWLQATCAYPDKQLFDWGMMRLHRPPYGVGDAFAMEADDQLRKKRDAERTSRLEEEEKNQIETRKRKFFAEILNAVREFHLQIQASIKRRKQRNDGIQAWHGRQRQRATRAEKLRFQALKADDQEAYMRLVKESKNERLTTLLEETNKLLVNLGAAVQRQKDSKLSDGIETLDESDVDLTELDSSKNATPQDLLIDEDLDAIDSDRNDESGDLLEGQRQYNSAIHSIQEKVTEQPTMLQGGELRPYQIEGLQWMLSLFNNNLNGILADEMGLGKTIQTISLIAYLMEYKDVTGPHLIVAPKAVLPNWIHEFTTWAPSIAAVLYDGRQEERKAIKEELLSEGKFCVLITHYDLIMRDKSFLKKIHWYYMIVDEGHRLKNRECALAQTLAGYQIKRRLLLTGTPIQNSLQELWSLLNFLLPHIFNSVQNFQEWFNAPFADRSDVTLTDEEELLIIRRLHHVIRPFILRRKKDEVEKYLPEKSQVILKCDMSAWQKVYYQQVTSIGRVDTGSGKSKSLQNLTMQLRKCCNHPYLFILGDYNIWRKEEIVRASGKFELLDRLLPKLHRAGHRVLLFSQMTRLMDILEIYLQLHEFRYLRLDGSTKTEERGALVKQFNAPDSPFFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSVEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMRRGTSALGTDVPSEREINRLAARSDEEFWLFEKMDEERRQKEKYRSRLMEEHEVPEWVYSVPDGNEEKNKGSEIFGVAGKRKRKEVIYADTLSDLQWMKAVENGEIPSLSMKGNRRETPSREGSASTSNITNTRAEDKLIEFDDNVPVMSEGTSEDNSGLEATPKRQKSEAVSIRKHEFLSESGTEWSRCVITWKTHKKKRSSYVQGSSDSRHNSNGRGNGWA 1096
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6814928 6822328 + ClCG06G005980.1 Cla06g00562 274754

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00562 1096 PANTHER ATP-DEPENDENT HELICASE BRM 15 1045 - -
Cla06g00562 1096 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 621 870 IPR027417 -
Cla06g00562 1096 SMART helicmild6 732 816 IPR001650 -
Cla06g00562 1096 SMART SnAC_2 909 971 IPR029295 GO:0042393
Cla06g00562 1096 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 706 873 IPR001650 -
Cla06g00562 1096 Coils Coil 189 216 - -
Cla06g00562 1096 Pfam Helicase conserved C-terminal domain 703 816 IPR001650 -
Cla06g00562 1096 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 371 619 IPR027417 -
Cla06g00562 1096 Pfam SNF2-related domain 398 683 IPR000330 GO:0005524|GO:0140658
Cla06g00562 1096 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 407 572 IPR014001 -
Cla06g00562 1096 Coils Coil 907 927 - -
Cla06g00562 1096 Pfam Snf2-ATP coupling, chromatin remodelling complex 910 971 IPR029295 GO:0042393
Cla06g00562 1096 SMART ultradead3 391 583 IPR014001 -
Cla06g00562 1096 CDD SF2_C_SNF 694 827 - -
Cla06g00562 1096 MobiDBLite consensus disorder prediction 993 1008 - -
Cla06g00562 1096 MobiDBLite consensus disorder prediction 1041 1056 - -
Cla06g00562 1096 PANTHER SNF2/RAD54 HELICASE FAMILY 15 1045 - -
Cla06g00562 1096 MobiDBLite consensus disorder prediction 1080 1096 - -
Cla06g00562 1096 Gene3D - 625 923 IPR027417 -
Cla06g00562 1096 Gene3D - 366 618 IPR038718 -
Cla06g00562 1096 MobiDBLite consensus disorder prediction 981 1096 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00562 - - - csv:101222943 2054.26
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00609 Cla-Chr5:5610172 Cla06g00562 Cla-Chr6:6814928 0 dispersed
Cla05g01208 Cla-Chr5:13432866 Cla06g00562 Cla-Chr6:6814928 1.40E-68 dispersed
Cla06g00499 Cla-Chr6:6047283 Cla06g00562 Cla-Chr6:6814928 8.64E-160 dispersed
Cla06g00562 Cla-Chr6:6814928 Cla07g00866 Cla-Chr7:24057474 1.06E-130 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g460 . . . . . Bpe14g01173 . . Cmo08g01132 Cmo17g00241 . . . . . . . . . . . . . . Cla06g00562 Cam06g0602 Cec06g0602 Cco06g0607 Clacu06g0588 Cmu06g0583 Cre06g1349 . . . . . . . . Blo02g00553 . . Bda13g00140 . . Bma02g00859 . Sed09g0640 . . Cma08g01160 Cma17g00255 Car08g01037 Car17g00229 Cpe12g00211 Cpe17g00136 Bhi12g01822 Tan06g2636 Cmetu11g0294 Lac12g2383 Hepe03g0122 . Lcy13g0197 . . . . . . . Lsi09g01338 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007862 1 1 1 1 1 1 2 1 1 2 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61254 PF00176 SNF2_N 7.00E-69 CL0023 Cla TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g00562 Cla_Chr06 FPKM 4.408581 4.005649 6.510251 6.635038 3.430772 3.675632 4.611576 11.988951 10.319666 12.149684