Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla06g00563 ATGGCGATTTCTGCTTTCCTCTTCCTCTTCCTCTTCCTCTTCCTCTCCTTCTCCTTCTTCCCCTCTTCTCATTCCCTCAAAGGCTATTTCATCGATTGCGGCTCCACTTCTCCCACCACACTCGACGGCCGCACCTGGCAACCCGACTCCGCCTTCGTCTTCGCTGGAACCAACAAGAACATCACCGACCCCGTTCTTGACCCTACGCTTTCCACTGTCCGCTCCTTTCCTAGGGCTCTTAATCGGAAATTTTGCTATGTTGTTGGACCTGTCTTTCGTACTCGGAGATATATGGTTAGAACCACGTATTACTACGGTGGAGCTAACGGCCTTGATTCGCCGCCGGTTTTCGATCAGATTGTTGATGGGACTGTTTGGAGCGTGGTGAATACTACCGAGGATTATGATAGGGGATTGACCTCGTATTACGAGGGGGTTTTTGAAGCCAAGGGGAAGTCCATTAGTGTGTGCATTGGTTCTAATACGTATACGGATTCTGACCCTTTTATTTCTGCCTTGGAGGTTGTCTTGTTGGGGGAATCTCTTTATAATACTACGGATTTCGTTAACCACGGCCTGCGTCTGGTTGCTAGGCACAGTTTTGGATACACTGGATCCAACTTACGGTATCCTGATGACGAATTTGATCGGTTTTGGCAACCTTTTGGGAATAACATTTGGAATGTAACCAATAGAACTGTATCTGCCTCTGGTATATGGAATCTCCCTCCATCTAAGATATTTGAAACAGAGCTGAGGACTGATAACCTGGAACCATTGGAGTTGAACTGGCCTCTTATTTCTCTTCCAGAAACAAATTTAACATATTACATTGCTCTATACTTTGCCAATGATCATCCTTCATCATCAGATAACTCGAGGGTGTTTAGCATAAGTCTGAATGGTATAACATATTACCATGATCTAAATGCAACTTCGGCAGGCCATGTTGTTTTTGCAAGTCGGTGGCCTCTTCATGGTCCAACAAAGATAACCTTGACTCCCTCTCCTCAGTCAAAACTTGGCCCATTGATCAATGGTGGAGAACTTTTTCACGTTGTGCCCCTTGAAGCAAGAACTCTTCTTTTCCATGATGCTCCTAAAAGGGGAGATCAGCTTAAACTTAATCATATATGCTGTTTTTGGTCATTTAGATGCCTTGTGAGCATTGTCTGTTGGTGGTCCATTTCATTCATGATTTATCACATGATTTTAAGTGTATTCAGCAAGATTTTTCGGATCACAGTTATTAATCTGGAGAGAATAAAAAGGAGTCTGAAAAATCCCCCAACTGATTGGATTGGTGATCCGTGCTTCCCCCAACAATATCGCTGGACAGGAATTACATGTTCTGAAGGTTCTCGAATTCGTGTGATTACCTTAAACCTTACGAGTATGGACCTTTCAGGATCCTTATCACCTAGCATTGCCAATCTTACTGCATTGTCTGGAATCTGGCTTGGAAACAACAGTTTGTCTGGACCAATTCCCGATCTCAGTGCTCTGAAGTTGTTGGAAATAGTGCATTTGGAAGATAATAATTTCAGTGGAGAGATCCCATCATCACTTGGGAATCTGCCTCGCTTGCAGGAACTGTTCTTATACAATAATAATCTGACTGGTGAAGTTCCTCAAAGTCTTACGAATAATGAACGACTGGATCTTAGGTACTTGTTAACTGCCCAGAAACTTTTACATCAAATCTTACCAGTCAAACCGGGCTTAGCTGTATCAATGTGCAGATACAGCTTCTGCACCACTGCTTCGCAATTCATAAATGGTGGGGGTATCATTGAGCCATCAAAGTTATGGAGTCTCCATGATCAACACATGGAGCTTCTAGGACCATTTAATTTCGCACAGAAAGCTATTCAGCTTCAGGTTGGATCTGTATAA 1896 43.41 MAISAFLFLFLFLFLSFSFFPSSHSLKGYFIDCGSTSPTTLDGRTWQPDSAFVFAGTNKNITDPVLDPTLSTVRSFPRALNRKFCYVVGPVFRTRRYMVRTTYYYGGANGLDSPPVFDQIVDGTVWSVVNTTEDYDRGLTSYYEGVFEAKGKSISVCIGSNTYTDSDPFISALEVVLLGESLYNTTDFVNHGLRLVARHSFGYTGSNLRYPDDEFDRFWQPFGNNIWNVTNRTVSASGIWNLPPSKIFETELRTDNLEPLELNWPLISLPETNLTYYIALYFANDHPSSSDNSRVFSISLNGITYYHDLNATSAGHVVFASRWPLHGPTKITLTPSPQSKLGPLINGGELFHVVPLEARTLLFHDAPKRGDQLKLNHICCFWSFRCLVSIVCWWSISFMIYHMILSVFSKIFRITVINLERIKRSLKNPPTDWIGDPCFPQQYRWTGITCSEGSRIRVITLNLTSMDLSGSLSPSIANLTALSGIWLGNNSLSGPIPDLSALKLLEIVHLEDNNFSGEIPSSLGNLPRLQELFLYNNNLTGEVPQSLTNNERLDLRYLLTAQKLLHQILPVKPGLAVSMCRYSFCTTASQFINGGGIIEPSKLWSLHDQHMELLGPFNFAQKAIQLQVGSV 631
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6824405 6830172 + ClCG06G005990.2 Cla06g00563 274755

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla06g00563 631 Pfam Malectin-like domain 31 353 IPR024788 -
Cla06g00563 631 Gene3D Ribonuclease Inhibitor 417 575 IPR032675 -
Cla06g00563 631 PANTHER BNAANNG03040D PROTEIN 18 362 - -
Cla06g00563 631 PANTHER BNAANNG03040D PROTEIN 418 555 - -
Cla06g00563 631 SUPERFAMILY L domain-like 440 553 - -
Cla06g00563 631 PANTHER OS07G0107800 PROTEIN-RELATED 418 555 - -
Cla06g00563 631 PANTHER OS07G0107800 PROTEIN-RELATED 18 362 - -
Cla06g00563 631 Gene3D - 201 350 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla06g00563 - - - csv:101222708 902.894
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00596 Cla-Chr2:6462337 Cla06g00563 Cla-Chr6:6824405 1.44E-110 dispersed
Cla06g00563 Cla-Chr6:6824405 Cla09g00030 Cla-Chr9:339249 4.15E-46 dispersed
Cla06g00563 Cla-Chr6:6824405 Cla05g02627 Cla-Chr5:37465029 1.87E-46 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g465 . . . . . Bpe14g01176 . . Cmo08g01131 . . . . . . . . . . . . . . . Cla06g00563 Cam06g0603 Cec06g0603 Cco06g0608 Clacu06g0589 Cmu06g0584 Cre06g1350 . . Cone7ag0236 Cone4ag0226 . . . . Blo02g00551 . . Bda13g00134 . . . . . . . Cma08g01159 . Car08g01036 . . Cpe17g00137 Bhi12g01823 . . . Hepe03g0115 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008562 2 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 0 1 1 6 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla06g00563 Cla_Chr06 FPKM 2.28169 0.0 2.405847 3.538568 0.0 0.0 0.0 3.516226 3.511792 4.08979